EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011214 (Gene tree)
Gene ID: 83503
Gene Symbol: Polr2f
Alias: LOC83503|RPB6
Full Name: RNA polymerase II subunit F
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 10411 bases
Position: chr7:120380544-120390954
Accession: 708567
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015009	RNA_pol_Rpb6	PF01192.22	1.3e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015009	-	627	-	ENSRNOP00000015009	127 (aa)	-	O88828

Gene Model

Click here to download ENSRNOG00000011214's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03020	RNA polymerase	KEGG
rno04623	Cytosolic DNA-sensing pathway	KEGG
rno05016	Huntington disease	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011214's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011214	Polr2f	100	99.213	ENSG00000100142	POLR2F	100	100.000	Homo_sapiens
ENSRNOG00000011214	Polr2f	100	88.189	ENSAPOG00000002902	polr2f	100	88.189	Acanthochromis_polyacanthus
ENSRNOG00000011214	Polr2f	100	98.425	ENSAMEG00000010331	POLR2F	100	98.425	Ailuropoda_melanoleuca
ENSRNOG00000011214	Polr2f	100	88.189	ENSACIG00000000923	polr2f	100	88.189	Amphilophus_citrinellus
ENSRNOG00000011214	Polr2f	100	88.976	ENSAOCG00000003182	polr2f	100	88.976	Amphiprion_ocellaris
ENSRNOG00000011214	Polr2f	100	88.976	ENSAPEG00000012999	polr2f	100	88.976	Amphiprion_percula
ENSRNOG00000011214	Polr2f	100	88.189	ENSATEG00000008929	polr2f	100	88.189	Anabas_testudineus
ENSRNOG00000011214	Polr2f	80	97.030	ENSAPLG00000015235	POLR2F	85	96.226	Anas_platyrhynchos
ENSRNOG00000011214	Polr2f	100	98.425	ENSACAG00000015288	POLR2F	100	98.425	Anolis_carolinensis
ENSRNOG00000011214	Polr2f	100	99.213	ENSANAG00000020840	POLR2F	100	99.213	Aotus_nancymaae
ENSRNOG00000011214	Polr2f	100	88.976	ENSACLG00000016129	polr2f	100	88.976	Astatotilapia_calliptera
ENSRNOG00000011214	Polr2f	100	90.551	ENSAMXG00000012812	polr2f	100	90.551	Astyanax_mexicanus
ENSRNOG00000011214	Polr2f	100	99.213	ENSBTAG00000004820	POLR2F	100	99.213	Bos_taurus
ENSRNOG00000011214	Polr2f	63	77.500	WBGene00007355	rpb-6	68	70.213	Caenorhabditis_elegans
ENSRNOG00000011214	Polr2f	100	99.213	ENSCJAG00000048241	POLR2F	100	99.213	Callithrix_jacchus
ENSRNOG00000011214	Polr2f	100	98.425	ENSCAFG00000001437	POLR2F	100	98.425	Canis_familiaris
ENSRNOG00000011214	Polr2f	95	98.347	ENSCHIG00000012907	POLR2F	95	98.347	Capra_hircus
ENSRNOG00000011214	Polr2f	100	98.425	ENSTSYG00000008187	POLR2F	100	98.425	Carlito_syrichta
ENSRNOG00000011214	Polr2f	94	99.167	ENSCAPG00000013419	POLR2F	94	99.167	Cavia_aperea
ENSRNOG00000011214	Polr2f	100	99.213	ENSCPOG00000034094	POLR2F	100	99.213	Cavia_porcellus
ENSRNOG00000011214	Polr2f	100	99.213	ENSCCAG00000036489	POLR2F	100	99.213	Cebus_capucinus
ENSRNOG00000011214	Polr2f	100	99.213	ENSCATG00000041014	POLR2F	100	99.213	Cercocebus_atys
ENSRNOG00000011214	Polr2f	100	99.213	ENSCLAG00000017167	POLR2F	100	99.213	Chinchilla_lanigera
ENSRNOG00000011214	Polr2f	100	99.213	ENSCSAG00000006862	POLR2F	100	99.213	Chlorocebus_sabaeus
ENSRNOG00000011214	Polr2f	95	97.521	ENSCPBG00000023030	POLR2F	62	97.521	Chrysemys_picta_bellii
ENSRNOG00000011214	Polr2f	83	73.585	ENSCING00000019359	-	73	75.000	Ciona_intestinalis
ENSRNOG00000011214	Polr2f	100	99.213	ENSCANG00000041884	POLR2F	100	99.213	Colobus_angolensis_palliatus
ENSRNOG00000011214	Polr2f	100	99.213	ENSCGRG00001023541	POLR2F	100	99.213	Cricetulus_griseus_chok1gshd
ENSRNOG00000011214	Polr2f	100	99.213	ENSCGRG00000011921	POLR2F	100	99.213	Cricetulus_griseus_crigri
ENSRNOG00000011214	Polr2f	83	89.623	ENSCSEG00000006848	polr2f	83	89.623	Cynoglossus_semilaevis
ENSRNOG00000011214	Polr2f	100	87.402	ENSCVAG00000010437	polr2f	100	87.402	Cyprinodon_variegatus
ENSRNOG00000011214	Polr2f	100	86.614	ENSDARG00000036625	polr2f	100	86.614	Danio_rerio
ENSRNOG00000011214	Polr2f	100	99.213	ENSDNOG00000005884	POLR2F	100	99.213	Dasypus_novemcinctus
ENSRNOG00000011214	Polr2f	100	99.213	ENSDORG00000024789	Polr2f	100	99.213	Dipodomys_ordii
ENSRNOG00000011214	Polr2f	80	72.115	FBgn0003275	RpII18	78	71.569	Drosophila_melanogaster
ENSRNOG00000011214	Polr2f	72	70.330	ENSEBUG00000002842	-	90	62.500	Eptatretus_burgeri
ENSRNOG00000011214	Polr2f	56	77.465	ENSEBUG00000008509	polr2f	73	77.465	Eptatretus_burgeri
ENSRNOG00000011214	Polr2f	72	97.802	ENSEASG00005018802	-	82	97.802	Equus_asinus_asinus
ENSRNOG00000011214	Polr2f	100	96.850	ENSEEUG00000011014	POLR2F	100	96.850	Erinaceus_europaeus
ENSRNOG00000011214	Polr2f	100	86.614	ENSELUG00000000319	polr2f	100	86.614	Esox_lucius
ENSRNOG00000011214	Polr2f	100	98.425	ENSFCAG00000002806	POLR2F	100	98.425	Felis_catus
ENSRNOG00000011214	Polr2f	100	99.213	ENSFDAG00000009926	POLR2F	100	99.213	Fukomys_damarensis
ENSRNOG00000011214	Polr2f	88	87.500	ENSFHEG00000005448	polr2f	84	87.736	Fundulus_heteroclitus
ENSRNOG00000011214	Polr2f	100	82.677	ENSGMOG00000009967	polr2f	100	82.677	Gadus_morhua
ENSRNOG00000011214	Polr2f	100	96.850	ENSGALG00000012291	POLR2F	100	96.850	Gallus_gallus
ENSRNOG00000011214	Polr2f	100	88.189	ENSGAFG00000017573	polr2f	100	88.189	Gambusia_affinis
ENSRNOG00000011214	Polr2f	100	84.252	ENSGACG00000007322	polr2f	100	84.252	Gasterosteus_aculeatus
ENSRNOG00000011214	Polr2f	100	98.425	ENSGAGG00000021757	POLR2F	100	98.425	Gopherus_agassizii
ENSRNOG00000011214	Polr2f	100	99.213	ENSGGOG00000005213	POLR2F	100	99.213	Gorilla_gorilla
ENSRNOG00000011214	Polr2f	100	88.976	ENSHBUG00000022089	polr2f	100	88.976	Haplochromis_burtoni
ENSRNOG00000011214	Polr2f	100	99.213	ENSHGLG00000018942	POLR2F	100	99.213	Heterocephalus_glaber_female
ENSRNOG00000011214	Polr2f	100	99.213	ENSHGLG00100012851	POLR2F	100	99.213	Heterocephalus_glaber_male
ENSRNOG00000011214	Polr2f	100	86.614	ENSHCOG00000006149	polr2f	100	86.614	Hippocampus_comes
ENSRNOG00000011214	Polr2f	76	90.722	ENSIPUG00000000814	polr2f	100	90.722	Ictalurus_punctatus
ENSRNOG00000011214	Polr2f	100	99.213	ENSSTOG00000025722	POLR2F	100	99.213	Ictidomys_tridecemlineatus
ENSRNOG00000011214	Polr2f	100	99.213	ENSJJAG00000008097	Polr2f	100	99.213	Jaculus_jaculus
ENSRNOG00000011214	Polr2f	100	89.764	ENSKMAG00000014230	polr2f	100	89.764	Kryptolebias_marmoratus
ENSRNOG00000011214	Polr2f	83	88.679	ENSLBEG00000008383	polr2f	88	88.679	Labrus_bergylta
ENSRNOG00000011214	Polr2f	100	93.701	ENSLACG00000003931	POLR2F	100	93.701	Latimeria_chalumnae
ENSRNOG00000011214	Polr2f	100	87.692	ENSLOCG00000011827	polr2f	100	87.692	Lepisosteus_oculatus
ENSRNOG00000011214	Polr2f	100	99.213	ENSLAFG00000012632	POLR2F	100	99.213	Loxodonta_africana
ENSRNOG00000011214	Polr2f	100	99.213	ENSMFAG00000033687	POLR2F	100	99.213	Macaca_fascicularis
ENSRNOG00000011214	Polr2f	95	98.347	ENSMMUG00000038231	POLR2F	99	98.347	Macaca_mulatta
ENSRNOG00000011214	Polr2f	100	99.213	ENSMNEG00000044365	POLR2F	100	99.213	Macaca_nemestrina
ENSRNOG00000011214	Polr2f	100	99.213	ENSMLEG00000033077	POLR2F	100	99.213	Mandrillus_leucophaeus
ENSRNOG00000011214	Polr2f	100	88.976	ENSMAMG00000008056	polr2f	100	88.976	Mastacembelus_armatus
ENSRNOG00000011214	Polr2f	100	88.976	ENSMZEG00005005705	polr2f	100	88.976	Maylandia_zebra
ENSRNOG00000011214	Polr2f	100	96.850	ENSMGAG00000012504	POLR2F	100	96.850	Meleagris_gallopavo
ENSRNOG00000011214	Polr2f	100	99.213	ENSMAUG00000018586	Polr2f	100	99.213	Mesocricetus_auratus
ENSRNOG00000011214	Polr2f	100	99.213	ENSMICG00000013128	POLR2F	100	99.213	Microcebus_murinus
ENSRNOG00000011214	Polr2f	100	99.213	ENSMOCG00000000237	Polr2f	100	99.213	Microtus_ochrogaster
ENSRNOG00000011214	Polr2f	100	88.976	ENSMMOG00000005106	polr2f	100	88.976	Mola_mola
ENSRNOG00000011214	Polr2f	100	96.850	ENSMODG00000019063	POLR2F	100	96.850	Monodelphis_domestica
ENSRNOG00000011214	Polr2f	100	88.976	ENSMALG00000001444	polr2f	100	88.976	Monopterus_albus
ENSRNOG00000011214	Polr2f	100	100.000	MGP_CAROLIEiJ_G0020006	Polr2f	100	100.000	Mus_caroli
ENSRNOG00000011214	Polr2f	100	100.000	ENSMUSG00000033020	Polr2f	100	100.000	Mus_musculus
ENSRNOG00000011214	Polr2f	100	100.000	MGP_PahariEiJ_G0020008	Polr2f	100	100.000	Mus_pahari
ENSRNOG00000011214	Polr2f	100	100.000	MGP_SPRETEiJ_G0020904	Polr2f	100	100.000	Mus_spretus
ENSRNOG00000011214	Polr2f	100	98.425	ENSMPUG00000012997	POLR2F	100	98.425	Mustela_putorius_furo
ENSRNOG00000011214	Polr2f	98	92.742	ENSMLUG00000029612	-	98	92.742	Myotis_lucifugus
ENSRNOG00000011214	Polr2f	100	96.899	ENSMLUG00000014315	-	100	96.899	Myotis_lucifugus
ENSRNOG00000011214	Polr2f	100	99.213	ENSNGAG00000020682	Polr2f	100	99.213	Nannospalax_galili
ENSRNOG00000011214	Polr2f	100	88.189	ENSNBRG00000002492	polr2f	100	88.189	Neolamprologus_brichardi
ENSRNOG00000011214	Polr2f	100	99.213	ENSNLEG00000014987	-	100	99.213	Nomascus_leucogenys
ENSRNOG00000011214	Polr2f	100	99.213	ENSODEG00000014123	POLR2F	100	99.213	Octodon_degus
ENSRNOG00000011214	Polr2f	100	88.189	ENSONIG00000008394	polr2f	100	88.189	Oreochromis_niloticus
ENSRNOG00000011214	Polr2f	100	98.425	ENSOANG00000014684	POLR2F	100	98.425	Ornithorhynchus_anatinus
ENSRNOG00000011214	Polr2f	100	99.213	ENSOCUG00000012064	POLR2F	100	99.213	Oryctolagus_cuniculus
ENSRNOG00000011214	Polr2f	100	86.614	ENSORLG00000014580	polr2f	100	86.614	Oryzias_latipes
ENSRNOG00000011214	Polr2f	100	87.402	ENSORLG00020006910	polr2f	100	87.402	Oryzias_latipes_hni
ENSRNOG00000011214	Polr2f	94	82.500	ENSORLG00015015332	polr2f	77	85.965	Oryzias_latipes_hsok
ENSRNOG00000011214	Polr2f	80	85.294	ENSOMEG00000006530	polr2f	65	80.000	Oryzias_melastigma
ENSRNOG00000011214	Polr2f	100	99.213	ENSOGAG00000025463	POLR2F	100	99.213	Otolemur_garnettii
ENSRNOG00000011214	Polr2f	100	99.213	ENSOARG00000014692	POLR2F	100	99.213	Ovis_aries
ENSRNOG00000011214	Polr2f	100	99.213	ENSPPAG00000024276	POLR2F	100	99.213	Pan_paniscus
ENSRNOG00000011214	Polr2f	100	98.425	ENSPPRG00000013030	POLR2F	100	98.425	Panthera_pardus
ENSRNOG00000011214	Polr2f	95	95.868	ENSPTIG00000000632	POLR2F	99	95.868	Panthera_tigris_altaica
ENSRNOG00000011214	Polr2f	100	99.213	ENSPTRG00000014356	POLR2F	100	99.213	Pan_troglodytes
ENSRNOG00000011214	Polr2f	100	99.213	ENSPANG00000023979	POLR2F	100	99.213	Papio_anubis
ENSRNOG00000011214	Polr2f	100	90.551	ENSPKIG00000002464	polr2f	100	90.551	Paramormyrops_kingsleyae
ENSRNOG00000011214	Polr2f	56	98.592	ENSPSIG00000013913	POLR2F	100	98.592	Pelodiscus_sinensis
ENSRNOG00000011214	Polr2f	100	88.976	ENSPMGG00000009619	polr2f	100	88.976	Periophthalmus_magnuspinnatus
ENSRNOG00000011214	Polr2f	100	99.213	ENSPEMG00000008322	Polr2f	100	99.213	Peromyscus_maniculatus_bairdii
ENSRNOG00000011214	Polr2f	100	96.850	ENSPCIG00000012000	-	100	96.850	Phascolarctos_cinereus
ENSRNOG00000011214	Polr2f	100	87.402	ENSPFOG00000000139	polr2f	100	87.402	Poecilia_formosa
ENSRNOG00000011214	Polr2f	100	87.402	ENSPLAG00000000988	polr2f	100	87.402	Poecilia_latipinna
ENSRNOG00000011214	Polr2f	100	87.402	ENSPMEG00000019063	polr2f	100	87.402	Poecilia_mexicana
ENSRNOG00000011214	Polr2f	77	87.755	ENSPREG00000016749	polr2f	100	87.755	Poecilia_reticulata
ENSRNOG00000011214	Polr2f	100	99.213	ENSPPYG00000011809	POLR2F	100	99.213	Pongo_abelii
ENSRNOG00000011214	Polr2f	100	99.213	ENSPCOG00000025716	POLR2F	100	99.213	Propithecus_coquereli
ENSRNOG00000011214	Polr2f	79	99.000	ENSPVAG00000010107	POLR2F	64	99.000	Pteropus_vampyrus
ENSRNOG00000011214	Polr2f	100	88.976	ENSPNYG00000019790	polr2f	100	88.976	Pundamilia_nyererei
ENSRNOG00000011214	Polr2f	100	89.764	ENSPNAG00000009017	polr2f	100	89.764	Pygocentrus_nattereri
ENSRNOG00000011214	Polr2f	100	99.213	ENSRBIG00000044878	POLR2F	100	99.213	Rhinopithecus_bieti
ENSRNOG00000011214	Polr2f	100	99.213	ENSRROG00000019586	POLR2F	100	99.213	Rhinopithecus_roxellana
ENSRNOG00000011214	Polr2f	100	99.213	ENSSBOG00000023340	POLR2F	100	99.213	Saimiri_boliviensis_boliviensis
ENSRNOG00000011214	Polr2f	100	96.850	ENSSHAG00000008502	POLR2F	100	96.850	Sarcophilus_harrisii
ENSRNOG00000011214	Polr2f	100	89.764	ENSSFOG00015012810	polr2f	100	89.764	Scleropages_formosus
ENSRNOG00000011214	Polr2f	100	88.189	ENSSMAG00000005354	polr2f	100	88.189	Scophthalmus_maximus
ENSRNOG00000011214	Polr2f	100	88.976	ENSSDUG00000016273	polr2f	100	88.976	Seriola_dumerili
ENSRNOG00000011214	Polr2f	100	88.976	ENSSLDG00000024895	polr2f	100	88.976	Seriola_lalandi_dorsalis
ENSRNOG00000011214	Polr2f	100	98.425	ENSSPUG00000011343	POLR2F	100	98.425	Sphenodon_punctatus
ENSRNOG00000011214	Polr2f	100	88.976	ENSSPAG00000019646	polr2f	100	88.976	Stegastes_partitus
ENSRNOG00000011214	Polr2f	100	100.000	ENSSSCG00000000116	POLR2F	100	100.000	Sus_scrofa
ENSRNOG00000011214	Polr2f	69	97.727	ENSTGUG00000016504	-	100	97.727	Taeniopygia_guttata
ENSRNOG00000011214	Polr2f	100	97.638	ENSTGUG00000010476	POLR2F	93	97.638	Taeniopygia_guttata
ENSRNOG00000011214	Polr2f	100	89.764	ENSTRUG00000021130	polr2f	71	89.764	Takifugu_rubripes
ENSRNOG00000011214	Polr2f	100	88.976	ENSTNIG00000010827	polr2f	100	88.976	Tetraodon_nigroviridis
ENSRNOG00000011214	Polr2f	79	99.000	ENSTTRG00000004817	POLR2F	64	99.000	Tursiops_truncatus
ENSRNOG00000011214	Polr2f	100	98.425	ENSUAMG00000020504	POLR2F	100	98.425	Ursus_americanus
ENSRNOG00000011214	Polr2f	100	98.425	ENSUMAG00000015052	POLR2F	100	98.425	Ursus_maritimus
ENSRNOG00000011214	Polr2f	95	97.521	ENSVVUG00000024021	POLR2F	92	97.521	Vulpes_vulpes
ENSRNOG00000011214	Polr2f	100	93.701	ENSXETG00000006346	polr2f	100	93.701	Xenopus_tropicalis
ENSRNOG00000011214	Polr2f	100	87.402	ENSXCOG00000015983	polr2f	100	87.402	Xiphophorus_couchianus
ENSRNOG00000011214	Polr2f	100	87.402	ENSXMAG00000001559	polr2f	100	87.402	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001055	RNA polymerase II activity	21873635.	IBA	Function
GO:0001056	RNA polymerase III activity	21873635.	IBA	Function
GO:0001650	fibrillar center	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	21873635.	IBA	Function
GO:0003899	DNA-directed 5'-3' RNA polymerase activity	10393248.	TAS	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0005665	RNA polymerase II, core complex	21873635.	IBA	Component
GO:0005665	RNA polymerase II, core complex	-	ISO	Component
GO:0005665	RNA polymerase II, core complex	-	ISS	Component
GO:0005665	RNA polymerase II, core complex	10393248.	TAS	Component
GO:0005666	RNA polymerase III complex	21873635.	IBA	Component
GO:0005666	RNA polymerase III complex	10393248.	TAS	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	10393248.	TAS	Component
GO:0006360	transcription by RNA polymerase I	10393248.	TAS	Process
GO:0006366	transcription by RNA polymerase II	-	ISO	Process
GO:0006366	transcription by RNA polymerase II	-	ISS	Process
GO:0006366	transcription by RNA polymerase II	10393248.	TAS	Process
GO:0006383	transcription by RNA polymerase III	10393248.	TAS	Process
GO:0008150	biological_process	-	ND	Process