EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011237 (Gene tree)
Gene ID: 305955
Gene Symbol: Zc3h13
Alias: LOC305955|RGD1307729
Full Name: zinc finger CCCH type containing 13
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 64709 bases
Position: chr15:57340579-57405287
Accession: 1307729
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015467	zf-CCCH	PF00642.24	1.6e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015467	-	6199	XM_006252316	ENSRNOP00000015467	1728 (aa)	XP_006252378	E9PSN4

Gene Model

Click here to download ENSRNOG00000011237's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011237's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011237	Zc3h13	50	77.716	ENSG00000123200	ZC3H13	98	94.690	Homo_sapiens
ENSRNOG00000011237	Zc3h13	50	82.139	ENSAMEG00000013117	ZC3H13	52	82.534	Ailuropoda_melanoleuca
ENSRNOG00000011237	Zc3h13	60	76.136	ENSAPLG00000002707	ZC3H13	57	76.983	Anas_platyrhynchos
ENSRNOG00000011237	Zc3h13	50	80.068	ENSCJAG00000016756	ZC3H13	53	80.113	Callithrix_jacchus
ENSRNOG00000011237	Zc3h13	50	82.346	ENSCAFG00000004511	ZC3H13	52	82.514	Canis_familiaris
ENSRNOG00000011237	Zc3h13	50	82.460	ENSCAFG00020019269	ZC3H13	96	89.563	Canis_lupus_dingo
ENSRNOG00000011237	Zc3h13	50	82.543	ENSTSYG00000000992	ZC3H13	52	81.528	Carlito_syrichta
ENSRNOG00000011237	Zc3h13	50	82.057	ENSCLAG00000000610	ZC3H13	53	82.225	Chinchilla_lanigera
ENSRNOG00000011237	Zc3h13	51	95.041	ENSCHOG00000009724	ZC3H13	56	91.150	Choloepus_hoffmanni
ENSRNOG00000011237	Zc3h13	50	86.902	ENSCGRG00001014490	Zc3h13	50	85.812	Cricetulus_griseus_chok1gshd
ENSRNOG00000011237	Zc3h13	50	81.642	ENSEASG00005017100	ZC3H13	52	81.579	Equus_asinus_asinus
ENSRNOG00000011237	Zc3h13	50	82.098	ENSECAG00000022843	ZC3H13	53	82.151	Equus_caballus
ENSRNOG00000011237	Zc3h13	50	81.207	ENSFCAG00000004877	ZC3H13	52	81.486	Felis_catus
ENSRNOG00000011237	Zc3h13	50	82.574	ENSHGLG00000006309	ZC3H13	53	81.901	Heterocephalus_glaber_female
ENSRNOG00000011237	Zc3h13	53	77.923	ENSHGLG00100007460	ZC3H13	50	81.667	Heterocephalus_glaber_male
ENSRNOG00000011237	Zc3h13	50	82.664	ENSJJAG00000019971	Zc3h13	52	82.778	Jaculus_jaculus
ENSRNOG00000011237	Zc3h13	59	86.590	ENSMLEG00000039387	ZC3H13	70	92.430	Mandrillus_leucophaeus
ENSRNOG00000011237	Zc3h13	50	94.476	MGP_CAROLIEiJ_G0019512	Zc3h13	50	94.476	Mus_caroli
ENSRNOG00000011237	Zc3h13	50	94.361	ENSMUSG00000022000	Zc3h13	50	94.361	Mus_musculus
ENSRNOG00000011237	Zc3h13	50	94.361	MGP_PahariEiJ_G0030530	Zc3h13	50	94.361	Mus_pahari
ENSRNOG00000011237	Zc3h13	50	94.246	MGP_SPRETEiJ_G0020407	Zc3h13	50	94.246	Mus_spretus
ENSRNOG00000011237	Zc3h13	50	80.182	ENSMPUG00000001602	ZC3H13	51	81.143	Mustela_putorius_furo
ENSRNOG00000011237	Zc3h13	50	79.067	ENSMLUG00000006920	ZC3H13	52	79.176	Myotis_lucifugus
ENSRNOG00000011237	Zc3h13	50	83.429	ENSOCUG00000015173	ZC3H13	52	83.601	Oryctolagus_cuniculus
ENSRNOG00000011237	Zc3h13	50	81.350	ENSOGAG00000012032	ZC3H13	52	81.515	Otolemur_garnettii
ENSRNOG00000011237	Zc3h13	76	88.664	ENSPCAG00000001146	ZC3H13	65	90.299	Procavia_capensis
ENSRNOG00000011237	Zc3h13	78	95.135	ENSPVAG00000012353	ZC3H13	69	85.926	Pteropus_vampyrus
ENSRNOG00000011237	Zc3h13	50	80.778	ENSSSCG00000009414	ZC3H13	52	80.138	Sus_scrofa
ENSRNOG00000011237	Zc3h13	79	81.452	ENSTTRG00000003611	ZC3H13	84	81.401	Tursiops_truncatus
ENSRNOG00000011237	Zc3h13	50	80.046	ENSUMAG00000016220	ZC3H13	52	79.863	Ursus_maritimus
ENSRNOG00000011237	Zc3h13	84	88.182	ENSVPAG00000005179	ZC3H13	53	89.381	Vicugna_pacos
ENSRNOG00000011237	Zc3h13	80	88.953	ENSVVUG00000028395	ZC3H13	52	82.400	Vulpes_vulpes
ENSRNOG00000011237	Zc3h13	93	58.590	ENSXETG00000014637	zc3h13	79	58.131	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005654	nucleoplasm	-	ISO	Component
GO:0016607	nuclear speck	21873635.	IBA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0036396	RNA N6-methyladenosine methyltransferase complex	-	IEA	Component
GO:0036396	RNA N6-methyladenosine methyltransferase complex	-	ISO	Component
GO:0046872	metal ion binding	-	IEA	Function
GO:0080009	mRNA methylation	-	IEA	Process
GO:0080009	mRNA methylation	-	ISO	Process
GO:2000036	regulation of stem cell population maintenance	-	IEA	Process
GO:2000036	regulation of stem cell population maintenance	-	ISO	Process