EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011268 (Gene tree)
Gene ID: 691589
Gene Symbol: Chd5
Alias: CHD-5|LOC691589
Full Name: chromodomain helicase DNA binding protein 5
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 47896 bases
Position: chr5:169519212-169567107
Accession: 1582725
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000060241	ResIII	PF04851.15	5.6e-08	1	1
ENSRNOP00000024732	ResIII	PF04851.15	1.2e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000067892	-	6677	-	ENSRNOP00000060241	1932 (aa)	-	D3ZR50
ENSRNOT00000024732	-	6528	-	ENSRNOP00000024732	1948 (aa)	-	A0A0H2UHP5

Gene Model

Click here to download ENSRNOG00000011268's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011268's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000011268	Chd5	92	68.997	ENSRNOG00000009722	Chd3	98	69.579
ENSRNOG00000011268	Chd5	95	70.498	ENSRNOG00000018309	Chd4	96	70.774

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011268	Chd5	100	94.780	ENSG00000116254	CHD5	100	94.933	Homo_sapiens
ENSRNOG00000011268	Chd5	99	93.825	ENSAMEG00000009880	CHD5	99	93.919	Ailuropoda_melanoleuca
ENSRNOG00000011268	Chd5	96	77.671	ENSACIG00000012582	chd5	99	76.939	Amphilophus_citrinellus
ENSRNOG00000011268	Chd5	96	78.414	ENSAOCG00000020356	chd5	93	77.691	Amphiprion_ocellaris
ENSRNOG00000011268	Chd5	95	79.915	ENSAPLG00000015475	CHD5	98	80.000	Anas_platyrhynchos
ENSRNOG00000011268	Chd5	99	82.863	ENSACAG00000002441	CHD5	99	82.350	Anolis_carolinensis
ENSRNOG00000011268	Chd5	87	94.973	ENSANAG00000001078	CHD5	91	94.973	Aotus_nancymaae
ENSRNOG00000011268	Chd5	96	74.296	ENSACLG00000003012	chd5	99	73.474	Astatotilapia_calliptera
ENSRNOG00000011268	Chd5	87	81.507	ENSAMXG00000008921	chd5	97	82.192	Astyanax_mexicanus
ENSRNOG00000011268	Chd5	94	95.877	ENSBTAG00000040477	CHD5	100	95.930	Bos_taurus
ENSRNOG00000011268	Chd5	100	94.473	ENSCJAG00000000101	CHD5	100	94.626	Callithrix_jacchus
ENSRNOG00000011268	Chd5	94	95.710	ENSCAFG00000019545	CHD5	100	95.762	Canis_familiaris
ENSRNOG00000011268	Chd5	99	94.877	ENSCAFG00020008689	CHD5	97	94.980	Canis_lupus_dingo
ENSRNOG00000011268	Chd5	99	94.160	ENSCHIG00000015027	CHD5	97	94.259	Capra_hircus
ENSRNOG00000011268	Chd5	99	89.485	ENSTSYG00000033991	CHD5	99	90.614	Carlito_syrichta
ENSRNOG00000011268	Chd5	99	94.032	ENSCAPG00000009294	CHD5	100	94.710	Cavia_aperea
ENSRNOG00000011268	Chd5	99	94.032	ENSCPOG00000025080	CHD5	100	94.710	Cavia_porcellus
ENSRNOG00000011268	Chd5	100	94.575	ENSCCAG00000024756	CHD5	100	94.729	Cebus_capucinus
ENSRNOG00000011268	Chd5	100	94.012	ENSCATG00000043011	CHD5	100	94.166	Cercocebus_atys
ENSRNOG00000011268	Chd5	100	94.169	ENSCLAG00000010589	CHD5	100	94.840	Chinchilla_lanigera
ENSRNOG00000011268	Chd5	100	94.831	ENSCSAG00000000733	CHD5	100	94.985	Chlorocebus_sabaeus
ENSRNOG00000011268	Chd5	94	89.254	ENSCPBG00000019363	CHD5	100	89.194	Chrysemys_picta_bellii
ENSRNOG00000011268	Chd5	99	94.920	ENSCANG00000032302	CHD5	99	95.065	Colobus_angolensis_palliatus
ENSRNOG00000011268	Chd5	55	98.302	ENSCGRG00001011042	Chd5	100	98.302	Cricetulus_griseus_chok1gshd
ENSRNOG00000011268	Chd5	99	97.247	ENSCGRG00000011341	Chd5	99	97.247	Cricetulus_griseus_crigri
ENSRNOG00000011268	Chd5	95	66.719	ENSDARG00000025789	chd4b	96	66.943	Danio_rerio
ENSRNOG00000011268	Chd5	97	77.112	ENSDARG00000105083	chd5	97	78.662	Danio_rerio
ENSRNOG00000011268	Chd5	100	90.481	ENSDNOG00000046342	CHD5	100	90.328	Dasypus_novemcinctus
ENSRNOG00000011268	Chd5	99	94.609	ENSDORG00000005923	Chd5	100	95.337	Dipodomys_ordii
ENSRNOG00000011268	Chd5	99	93.439	ENSEASG00005021464	CHD5	98	93.535	Equus_asinus_asinus
ENSRNOG00000011268	Chd5	99	92.748	ENSECAG00000025043	CHD5	98	97.211	Equus_caballus
ENSRNOG00000011268	Chd5	76	99.070	ENSEEUG00000002772	CHD5	77	99.070	Erinaceus_europaeus
ENSRNOG00000011268	Chd5	94	76.009	ENSELUG00000010742	chd5	90	91.163	Esox_lucius
ENSRNOG00000011268	Chd5	100	94.422	ENSFCAG00000006319	CHD5	100	94.524	Felis_catus
ENSRNOG00000011268	Chd5	99	87.448	ENSFALG00000009740	CHD5	99	87.429	Ficedula_albicollis
ENSRNOG00000011268	Chd5	99	93.844	ENSFDAG00000012881	CHD5	97	92.817	Fukomys_damarensis
ENSRNOG00000011268	Chd5	100	86.173	ENSGALG00000000747	CHD5	100	86.480	Gallus_gallus
ENSRNOG00000011268	Chd5	56	82.601	ENSGACG00000004389	chd5	93	82.784	Gasterosteus_aculeatus
ENSRNOG00000011268	Chd5	97	87.400	ENSGAGG00000001590	CHD5	99	94.634	Gopherus_agassizii
ENSRNOG00000011268	Chd5	99	94.811	ENSGGOG00000000708	CHD5	100	94.917	Gorilla_gorilla
ENSRNOG00000011268	Chd5	96	75.932	ENSHBUG00000013453	chd5	99	75.066	Haplochromis_burtoni
ENSRNOG00000011268	Chd5	100	94.268	ENSHGLG00000018184	CHD5	100	94.933	Heterocephalus_glaber_female
ENSRNOG00000011268	Chd5	99	88.025	ENSHGLG00100013261	CHD5	97	88.600	Heterocephalus_glaber_male
ENSRNOG00000011268	Chd5	95	77.730	ENSIPUG00000005446	chd5	98	78.256	Ictalurus_punctatus
ENSRNOG00000011268	Chd5	99	94.298	ENSSTOG00000002778	CHD5	100	94.084	Ictidomys_tridecemlineatus
ENSRNOG00000011268	Chd5	100	96.004	ENSJJAG00000019072	Chd5	100	96.004	Jaculus_jaculus
ENSRNOG00000011268	Chd5	97	81.211	ENSLOCG00000004944	chd5	95	80.292	Lepisosteus_oculatus
ENSRNOG00000011268	Chd5	99	94.496	ENSLAFG00000006348	CHD5	99	95.164	Loxodonta_africana
ENSRNOG00000011268	Chd5	100	94.634	ENSMFAG00000033993	CHD5	100	95.377	Macaca_fascicularis
ENSRNOG00000011268	Chd5	99	94.813	ENSMMUG00000016838	CHD5	99	94.961	Macaca_mulatta
ENSRNOG00000011268	Chd5	100	94.882	ENSMNEG00000040044	CHD5	100	95.036	Macaca_nemestrina
ENSRNOG00000011268	Chd5	99	91.551	ENSMLEG00000039166	CHD5	100	91.658	Mandrillus_leucophaeus
ENSRNOG00000011268	Chd5	96	74.615	ENSMZEG00005000841	chd5	94	78.389	Maylandia_zebra
ENSRNOG00000011268	Chd5	99	86.577	ENSMGAG00000001055	CHD5	99	86.939	Meleagris_gallopavo
ENSRNOG00000011268	Chd5	100	91.551	ENSMICG00000017862	CHD5	100	92.268	Microcebus_murinus
ENSRNOG00000011268	Chd5	100	97.587	ENSMOCG00000011049	Chd5	100	97.587	Microtus_ochrogaster
ENSRNOG00000011268	Chd5	91	79.969	ENSMODG00000006294	CHD5	78	93.649	Monodelphis_domestica
ENSRNOG00000011268	Chd5	96	77.401	ENSMALG00000002831	chd5	99	76.582	Monopterus_albus
ENSRNOG00000011268	Chd5	100	98.769	MGP_CAROLIEiJ_G0026857	Chd5	100	98.769	Mus_caroli
ENSRNOG00000011268	Chd5	100	98.207	ENSMUSG00000005045	Chd5	100	98.207	Mus_musculus
ENSRNOG00000011268	Chd5	100	98.512	MGP_PahariEiJ_G0029205	Chd5	100	98.512	Mus_pahari
ENSRNOG00000011268	Chd5	100	98.461	MGP_SPRETEiJ_G0027850	Chd5	100	98.461	Mus_spretus
ENSRNOG00000011268	Chd5	100	89.840	ENSMPUG00000007122	CHD5	100	89.634	Mustela_putorius_furo
ENSRNOG00000011268	Chd5	99	95.008	ENSNGAG00000019812	Chd5	96	95.673	Nannospalax_galili
ENSRNOG00000011268	Chd5	99	92.435	ENSNLEG00000010320	CHD5	100	92.376	Nomascus_leucogenys
ENSRNOG00000011268	Chd5	87	87.377	ENSOPRG00000004304	CHD5	87	87.452	Ochotona_princeps
ENSRNOG00000011268	Chd5	99	93.925	ENSODEG00000010262	CHD5	100	94.447	Octodon_degus
ENSRNOG00000011268	Chd5	94	77.092	ENSONIG00000000619	chd5	96	76.272	Oreochromis_niloticus
ENSRNOG00000011268	Chd5	97	71.303	ENSOANG00000001819	CHD5	98	71.443	Ornithorhynchus_anatinus
ENSRNOG00000011268	Chd5	99	92.111	ENSOGAG00000005703	CHD5	99	92.674	Otolemur_garnettii
ENSRNOG00000011268	Chd5	98	93.789	ENSOARG00000013425	CHD5	98	93.895	Ovis_aries
ENSRNOG00000011268	Chd5	99	94.761	ENSPPAG00000034048	CHD5	100	94.868	Pan_paniscus
ENSRNOG00000011268	Chd5	100	93.910	ENSPPRG00000009453	CHD5	100	94.012	Panthera_pardus
ENSRNOG00000011268	Chd5	99	86.748	ENSPTIG00000013926	CHD5	100	86.908	Panthera_tigris_altaica
ENSRNOG00000011268	Chd5	100	94.731	ENSPTRG00000000075	CHD5	100	94.885	Pan_troglodytes
ENSRNOG00000011268	Chd5	100	95.036	ENSPANG00000006765	CHD5	100	95.189	Papio_anubis
ENSRNOG00000011268	Chd5	95	78.355	ENSPKIG00000004282	chd5	98	77.748	Paramormyrops_kingsleyae
ENSRNOG00000011268	Chd5	94	82.356	ENSPSIG00000006414	CHD5	99	82.503	Pelodiscus_sinensis
ENSRNOG00000011268	Chd5	69	98.195	ENSPEMG00000014799	Chd5	100	98.195	Peromyscus_maniculatus_bairdii
ENSRNOG00000011268	Chd5	99	90.491	ENSPCIG00000028310	CHD5	100	88.861	Phascolarctos_cinereus
ENSRNOG00000011268	Chd5	96	75.696	ENSPLAG00000005343	chd5	99	74.466	Poecilia_latipinna
ENSRNOG00000011268	Chd5	99	91.164	ENSPPYG00000001952	CHD5	100	91.844	Pongo_abelii
ENSRNOG00000011268	Chd5	100	94.524	ENSPCOG00000022930	CHD5	100	95.241	Propithecus_coquereli
ENSRNOG00000011268	Chd5	96	77.937	ENSPNYG00000003183	chd5	99	76.984	Pundamilia_nyererei
ENSRNOG00000011268	Chd5	95	96.336	ENSRBIG00000032140	CHD5	95	96.402	Rhinopithecus_bieti
ENSRNOG00000011268	Chd5	99	94.914	ENSRROG00000041146	CHD5	99	95.065	Rhinopithecus_roxellana
ENSRNOG00000011268	Chd5	99	90.228	ENSSBOG00000001955	CHD5	100	95.193	Saimiri_boliviensis_boliviensis
ENSRNOG00000011268	Chd5	97	85.066	ENSSHAG00000018641	CHD5	99	85.140	Sarcophilus_harrisii
ENSRNOG00000011268	Chd5	98	77.303	ENSSFOG00015006296	chd5	92	86.381	Scleropages_formosus
ENSRNOG00000011268	Chd5	96	78.085	ENSSDUG00000017526	chd5	99	77.314	Seriola_dumerili
ENSRNOG00000011268	Chd5	97	80.854	ENSSPUG00000010622	CHD5	98	80.645	Sphenodon_punctatus
ENSRNOG00000011268	Chd5	98	95.089	ENSSSCG00000003366	CHD5	100	95.652	Sus_scrofa
ENSRNOG00000011268	Chd5	94	82.512	ENSTGUG00000002634	-	100	82.488	Taeniopygia_guttata
ENSRNOG00000011268	Chd5	53	80.509	ENSTNIG00000004346	chd5	99	80.648	Tetraodon_nigroviridis
ENSRNOG00000011268	Chd5	100	92.524	ENSTTRG00000010468	CHD5	100	92.883	Tursiops_truncatus
ENSRNOG00000011268	Chd5	99	94.715	ENSUAMG00000024509	CHD5	97	95.162	Ursus_americanus
ENSRNOG00000011268	Chd5	99	89.634	ENSUMAG00000024173	CHD5	98	90.005	Ursus_maritimus
ENSRNOG00000011268	Chd5	99	93.769	ENSVVUG00000026480	CHD5	96	96.748	Vulpes_vulpes
ENSRNOG00000011268	Chd5	97	78.613	ENSXETG00000002904	chd5	99	78.079	Xenopus_tropicalis
ENSRNOG00000011268	Chd5	59	83.871	ENSXCOG00000014202	chd5	99	83.871	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000785	chromatin	21931736.	IDA	Component
GO:0000792	heterochromatin	-	ISO	Component
GO:0000792	heterochromatin	-	ISS	Component
GO:0003677	DNA binding	-	IEA	Function
GO:0003682	chromatin binding	21931736.	IDA	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	12189208.21931736.	IDA	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006366	transcription by RNA polymerase II	21931736.	IMP	Process
GO:0008150	biological_process	-	ND	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0016581	NuRD complex	-	ISO	Component
GO:0016581	NuRD complex	-	ISS	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0021895	cerebral cortex neuron differentiation	-	ISO	Process
GO:0021895	cerebral cortex neuron differentiation	-	ISS	Process
GO:0035093	spermatogenesis, exchange of chromosomal proteins	-	ISO	Process
GO:0035093	spermatogenesis, exchange of chromosomal proteins	-	ISS	Process
GO:0042826	histone deacetylase binding	-	ISO	Function
GO:0043967	histone H4 acetylation	-	ISO	Process
GO:0043967	histone H4 acetylation	-	ISS	Process
GO:0045595	regulation of cell differentiation	-	ISO	Process
GO:0046872	metal ion binding	-	IEA	Function
GO:0060850	regulation of transcription involved in cell fate commitment	-	IEA	Process
GO:0060850	regulation of transcription involved in cell fate commitment	-	ISO	Process
GO:0060850	regulation of transcription involved in cell fate commitment	-	ISS	Process
GO:0061628	H3K27me3 modified histone binding	-	IEA	Function
GO:0061628	H3K27me3 modified histone binding	-	ISO	Function
GO:0061628	H3K27me3 modified histone binding	-	ISS	Function
GO:0098532	histone H3-K27 trimethylation	-	IEA	Process
GO:0098532	histone H3-K27 trimethylation	-	ISO	Process
GO:0098532	histone H3-K27 trimethylation	-	ISS	Process
GO:1901798	positive regulation of signal transduction by p53 class mediator	-	ISO	Process
GO:1901798	positive regulation of signal transduction by p53 class mediator	-	ISS	Process