EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011567 (Gene tree)
Gene ID: 315550
Gene Symbol: Rpusd4
Alias: LOC315550|MGC116175|RGD1311268
Full Name: RNA pseudouridine synthase D4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9484 bases
Position: chr8:36467706-36477189
Accession: 1311268
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015670	PseudoU_synth_2	PF00849.22	9.1e-34	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015670	-	1800	-	ENSRNOP00000015670	377 (aa)	-	Q4QQT0

Gene Model

Click here to download ENSRNOG00000011567's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011567's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000011567	Rpusd4	64	32.308	ENSRNOG00000009084	Rpusd3	77	32.308

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011567	Rpusd4	100	79.576	ENSG00000165526	RPUSD4	100	79.576	Homo_sapiens
ENSRNOG00000011567	Rpusd4	87	50.904	ENSAPOG00000011024	rpusd4	83	50.904	Acanthochromis_polyacanthus
ENSRNOG00000011567	Rpusd4	83	80.420	ENSAMEG00000005953	-	100	80.420	Ailuropoda_melanoleuca
ENSRNOG00000011567	Rpusd4	100	79.045	ENSAMEG00000000127	-	100	79.045	Ailuropoda_melanoleuca
ENSRNOG00000011567	Rpusd4	90	48.986	ENSACIG00000003533	rpusd4	99	48.986	Amphilophus_citrinellus
ENSRNOG00000011567	Rpusd4	87	51.198	ENSAOCG00000015409	rpusd4	82	51.198	Amphiprion_ocellaris
ENSRNOG00000011567	Rpusd4	88	51.039	ENSAPEG00000018935	rpusd4	83	51.039	Amphiprion_percula
ENSRNOG00000011567	Rpusd4	88	50.888	ENSATEG00000008059	rpusd4	83	50.888	Anabas_testudineus
ENSRNOG00000011567	Rpusd4	73	60.215	ENSAPLG00000013250	RPUSD4	99	58.983	Anas_platyrhynchos
ENSRNOG00000011567	Rpusd4	97	60.598	ENSACAG00000000189	RPUSD4	100	60.598	Anolis_carolinensis
ENSRNOG00000011567	Rpusd4	99	81.183	ENSANAG00000024050	RPUSD4	100	81.183	Aotus_nancymaae
ENSRNOG00000011567	Rpusd4	86	52.568	ENSACLG00000020996	rpusd4	84	52.568	Astatotilapia_calliptera
ENSRNOG00000011567	Rpusd4	90	48.442	ENSAMXG00000031479	rpusd4	95	49.555	Astyanax_mexicanus
ENSRNOG00000011567	Rpusd4	98	76.075	ENSBTAG00000020900	RPUSD4	98	76.075	Bos_taurus
ENSRNOG00000011567	Rpusd4	98	81.081	ENSCJAG00000042850	RPUSD4	93	81.081	Callithrix_jacchus
ENSRNOG00000011567	Rpusd4	100	79.365	ENSCAFG00000010488	RPUSD4	100	79.365	Canis_familiaris
ENSRNOG00000011567	Rpusd4	100	79.365	ENSCAFG00020010621	RPUSD4	100	79.365	Canis_lupus_dingo
ENSRNOG00000011567	Rpusd4	98	76.408	ENSCHIG00000009975	RPUSD4	98	76.408	Capra_hircus
ENSRNOG00000011567	Rpusd4	98	82.432	ENSTSYG00000008456	RPUSD4	98	82.432	Carlito_syrichta
ENSRNOG00000011567	Rpusd4	68	79.070	ENSCAPG00000006040	RPUSD4	100	79.070	Cavia_aperea
ENSRNOG00000011567	Rpusd4	100	78.249	ENSCPOG00000014971	RPUSD4	100	78.249	Cavia_porcellus
ENSRNOG00000011567	Rpusd4	99	81.720	ENSCCAG00000027838	RPUSD4	100	81.720	Cebus_capucinus
ENSRNOG00000011567	Rpusd4	100	79.841	ENSCATG00000041570	RPUSD4	100	79.841	Cercocebus_atys
ENSRNOG00000011567	Rpusd4	100	80.371	ENSCLAG00000016553	RPUSD4	100	80.371	Chinchilla_lanigera
ENSRNOG00000011567	Rpusd4	100	79.841	ENSCSAG00000002274	RPUSD4	100	79.841	Chlorocebus_sabaeus
ENSRNOG00000011567	Rpusd4	74	83.571	ENSCHOG00000010249	RPUSD4	99	83.571	Choloepus_hoffmanni
ENSRNOG00000011567	Rpusd4	75	68.421	ENSCPBG00000011175	RPUSD4	98	68.421	Chrysemys_picta_bellii
ENSRNOG00000011567	Rpusd4	71	42.960	ENSCSAVG00000000872	-	54	42.960	Ciona_savignyi
ENSRNOG00000011567	Rpusd4	100	79.310	ENSCANG00000039684	RPUSD4	100	79.310	Colobus_angolensis_palliatus
ENSRNOG00000011567	Rpusd4	100	90.186	ENSCGRG00001024141	Rpusd4	100	90.186	Cricetulus_griseus_chok1gshd
ENSRNOG00000011567	Rpusd4	100	90.186	ENSCGRG00000014415	Rpusd4	100	90.186	Cricetulus_griseus_crigri
ENSRNOG00000011567	Rpusd4	93	48.128	ENSCVAG00000000392	rpusd4	95	51.183	Cyprinodon_variegatus
ENSRNOG00000011567	Rpusd4	93	47.861	ENSCVAG00000008761	rpusd4	95	47.861	Cyprinodon_variegatus
ENSRNOG00000011567	Rpusd4	85	50.307	ENSDARG00000012674	rpusd4	91	50.307	Danio_rerio
ENSRNOG00000011567	Rpusd4	100	76.393	ENSDNOG00000020026	RPUSD4	100	76.393	Dasypus_novemcinctus
ENSRNOG00000011567	Rpusd4	98	81.132	ENSDORG00000016717	Rpusd4	98	81.132	Dipodomys_ordii
ENSRNOG00000011567	Rpusd4	99	77.600	ENSETEG00000013953	RPUSD4	99	77.600	Echinops_telfairi
ENSRNOG00000011567	Rpusd4	100	80.637	ENSEASG00005022982	RPUSD4	100	80.637	Equus_asinus_asinus
ENSRNOG00000011567	Rpusd4	100	80.371	ENSECAG00000000557	RPUSD4	100	80.371	Equus_caballus
ENSRNOG00000011567	Rpusd4	80	79.348	ENSEEUG00000014036	RPUSD4	80	79.348	Erinaceus_europaeus
ENSRNOG00000011567	Rpusd4	92	52.055	ENSELUG00000008075	rpusd4	94	52.198	Esox_lucius
ENSRNOG00000011567	Rpusd4	100	79.045	ENSFCAG00000029789	RPUSD4	100	79.045	Felis_catus
ENSRNOG00000011567	Rpusd4	90	57.353	ENSFALG00000005171	RPUSD4	100	57.353	Ficedula_albicollis
ENSRNOG00000011567	Rpusd4	99	81.720	ENSFDAG00000014307	RPUSD4	99	81.720	Fukomys_damarensis
ENSRNOG00000011567	Rpusd4	94	48.889	ENSFHEG00000004329	rpusd4	91	48.889	Fundulus_heteroclitus
ENSRNOG00000011567	Rpusd4	85	51.376	ENSGMOG00000017726	rpusd4	96	51.376	Gadus_morhua
ENSRNOG00000011567	Rpusd4	92	54.775	ENSGALG00000024326	RPUSD4	100	55.556	Gallus_gallus
ENSRNOG00000011567	Rpusd4	87	49.112	ENSGAFG00000021559	rpusd4	86	49.112	Gambusia_affinis
ENSRNOG00000011567	Rpusd4	85	50.307	ENSGACG00000001657	rpusd4	97	51.071	Gasterosteus_aculeatus
ENSRNOG00000011567	Rpusd4	95	61.667	ENSGAGG00000000132	RPUSD4	98	61.667	Gopherus_agassizii
ENSRNOG00000011567	Rpusd4	100	79.310	ENSGGOG00000016494	RPUSD4	100	79.310	Gorilla_gorilla
ENSRNOG00000011567	Rpusd4	86	52.568	ENSHBUG00000022838	rpusd4	84	52.568	Haplochromis_burtoni
ENSRNOG00000011567	Rpusd4	100	81.167	ENSHGLG00000002285	RPUSD4	100	81.167	Heterocephalus_glaber_female
ENSRNOG00000011567	Rpusd4	100	81.167	ENSHGLG00100006385	RPUSD4	100	81.167	Heterocephalus_glaber_male
ENSRNOG00000011567	Rpusd4	86	51.829	ENSHCOG00000006612	rpusd4	83	51.829	Hippocampus_comes
ENSRNOG00000011567	Rpusd4	86	52.744	ENSIPUG00000023879	rusd4	85	52.744	Ictalurus_punctatus
ENSRNOG00000011567	Rpusd4	97	81.319	ENSSTOG00000025280	RPUSD4	100	81.319	Ictidomys_tridecemlineatus
ENSRNOG00000011567	Rpusd4	99	83.871	ENSJJAG00000018673	Rpusd4	100	83.871	Jaculus_jaculus
ENSRNOG00000011567	Rpusd4	94	51.366	ENSKMAG00000021805	rpusd4	95	51.366	Kryptolebias_marmoratus
ENSRNOG00000011567	Rpusd4	86	52.134	ENSLBEG00000020394	rpusd4	91	52.134	Labrus_bergylta
ENSRNOG00000011567	Rpusd4	87	59.819	ENSLACG00000011028	RPUSD4	94	56.417	Latimeria_chalumnae
ENSRNOG00000011567	Rpusd4	86	47.720	ENSLOCG00000003124	rpusd4	88	47.720	Lepisosteus_oculatus
ENSRNOG00000011567	Rpusd4	99	79.679	ENSLAFG00000005211	RPUSD4	99	79.679	Loxodonta_africana
ENSRNOG00000011567	Rpusd4	100	79.841	ENSMFAG00000039513	RPUSD4	100	79.841	Macaca_fascicularis
ENSRNOG00000011567	Rpusd4	100	79.576	ENSMMUG00000007933	RPUSD4	100	79.576	Macaca_mulatta
ENSRNOG00000011567	Rpusd4	100	79.576	ENSMNEG00000027414	RPUSD4	100	79.576	Macaca_nemestrina
ENSRNOG00000011567	Rpusd4	100	79.576	ENSMLEG00000042461	RPUSD4	100	79.576	Mandrillus_leucophaeus
ENSRNOG00000011567	Rpusd4	87	49.851	ENSMAMG00000023839	rpusd4	86	49.851	Mastacembelus_armatus
ENSRNOG00000011567	Rpusd4	86	52.568	ENSMZEG00005011999	rpusd4	84	52.568	Maylandia_zebra
ENSRNOG00000011567	Rpusd4	74	61.429	ENSMGAG00000000840	RPUSD4	99	58.333	Meleagris_gallopavo
ENSRNOG00000011567	Rpusd4	100	87.533	ENSMAUG00000010280	Rpusd4	100	87.533	Mesocricetus_auratus
ENSRNOG00000011567	Rpusd4	99	80.749	ENSMICG00000015979	RPUSD4	94	86.174	Microcebus_murinus
ENSRNOG00000011567	Rpusd4	99	87.500	ENSMOCG00000000661	Rpusd4	99	87.500	Microtus_ochrogaster
ENSRNOG00000011567	Rpusd4	78	54.849	ENSMMOG00000021731	rpusd4	88	54.849	Mola_mola
ENSRNOG00000011567	Rpusd4	86	74.847	ENSMODG00000004521	RPUSD4	84	74.847	Monodelphis_domestica
ENSRNOG00000011567	Rpusd4	80	52.273	ENSMALG00000005839	rpusd4	98	50.769	Monopterus_albus
ENSRNOG00000011567	Rpusd4	100	92.573	MGP_CAROLIEiJ_G0031954	Rpusd4	100	92.573	Mus_caroli
ENSRNOG00000011567	Rpusd4	100	92.573	ENSMUSG00000032044	Rpusd4	100	92.573	Mus_musculus
ENSRNOG00000011567	Rpusd4	100	92.838	MGP_PahariEiJ_G0014819	Rpusd4	100	92.838	Mus_pahari
ENSRNOG00000011567	Rpusd4	100	92.573	MGP_SPRETEiJ_G0033078	Rpusd4	100	92.573	Mus_spretus
ENSRNOG00000011567	Rpusd4	98	77.898	ENSMPUG00000006608	RPUSD4	99	77.898	Mustela_putorius_furo
ENSRNOG00000011567	Rpusd4	89	82.789	ENSMLUG00000017328	-	96	78.904	Myotis_lucifugus
ENSRNOG00000011567	Rpusd4	67	83.465	ENSMLUG00000029348	-	100	83.465	Myotis_lucifugus
ENSRNOG00000011567	Rpusd4	99	83.245	ENSNGAG00000020847	Rpusd4	99	83.245	Nannospalax_galili
ENSRNOG00000011567	Rpusd4	86	53.191	ENSNBRG00000005207	rpusd4	95	53.191	Neolamprologus_brichardi
ENSRNOG00000011567	Rpusd4	99	80.645	ENSNLEG00000007465	RPUSD4	99	80.645	Nomascus_leucogenys
ENSRNOG00000011567	Rpusd4	97	69.780	ENSMEUG00000004370	RPUSD4	98	69.780	Notamacropus_eugenii
ENSRNOG00000011567	Rpusd4	70	58.491	ENSOPRG00000013141	-	100	58.491	Ochotona_princeps
ENSRNOG00000011567	Rpusd4	100	79.310	ENSODEG00000004577	RPUSD4	100	79.310	Octodon_degus
ENSRNOG00000011567	Rpusd4	94	51.389	ENSONIG00000018879	rpusd4	96	51.389	Oreochromis_niloticus
ENSRNOG00000011567	Rpusd4	82	67.093	ENSOANG00000007247	RPUSD4	100	67.093	Ornithorhynchus_anatinus
ENSRNOG00000011567	Rpusd4	100	80.159	ENSOCUG00000017039	RPUSD4	100	80.159	Oryctolagus_cuniculus
ENSRNOG00000011567	Rpusd4	92	48.870	ENSORLG00000002750	rpusd4	97	48.870	Oryzias_latipes
ENSRNOG00000011567	Rpusd4	91	47.922	ENSORLG00020002044	rpusd4	90	47.922	Oryzias_latipes_hni
ENSRNOG00000011567	Rpusd4	92	48.501	ENSORLG00015020034	rpusd4	92	47.861	Oryzias_latipes_hsok
ENSRNOG00000011567	Rpusd4	88	51.032	ENSOMEG00000004861	rpusd4	83	51.032	Oryzias_melastigma
ENSRNOG00000011567	Rpusd4	99	80.214	ENSOGAG00000008922	RPUSD4	99	80.214	Otolemur_garnettii
ENSRNOG00000011567	Rpusd4	96	77.198	ENSOARG00000012238	RPUSD4	97	76.839	Ovis_aries
ENSRNOG00000011567	Rpusd4	100	79.841	ENSPPAG00000042883	RPUSD4	93	79.841	Pan_paniscus
ENSRNOG00000011567	Rpusd4	100	79.045	ENSPPRG00000003081	RPUSD4	100	79.045	Panthera_pardus
ENSRNOG00000011567	Rpusd4	100	79.045	ENSPTIG00000012059	RPUSD4	100	79.045	Panthera_tigris_altaica
ENSRNOG00000011567	Rpusd4	100	79.576	ENSPTRG00000004454	RPUSD4	100	79.576	Pan_troglodytes
ENSRNOG00000011567	Rpusd4	100	80.106	ENSPANG00000015040	RPUSD4	100	80.106	Papio_anubis
ENSRNOG00000011567	Rpusd4	93	55.932	ENSPKIG00000023986	rpusd4	89	55.932	Paramormyrops_kingsleyae
ENSRNOG00000011567	Rpusd4	83	64.331	ENSPSIG00000014268	RPUSD4	99	64.331	Pelodiscus_sinensis
ENSRNOG00000011567	Rpusd4	86	51.064	ENSPMGG00000002806	rpusd4	91	50.915	Periophthalmus_magnuspinnatus
ENSRNOG00000011567	Rpusd4	100	81.698	ENSPEMG00000000278	Rpusd4	100	81.698	Peromyscus_maniculatus_bairdii
ENSRNOG00000011567	Rpusd4	80	45.672	ENSPMAG00000008183	rpusd4	97	45.672	Petromyzon_marinus
ENSRNOG00000011567	Rpusd4	93	71.709	ENSPCIG00000010212	RPUSD4	98	71.709	Phascolarctos_cinereus
ENSRNOG00000011567	Rpusd4	87	50.588	ENSPFOG00000019030	rpusd4	89	50.588	Poecilia_formosa
ENSRNOG00000011567	Rpusd4	87	51.183	ENSPLAG00000016848	rpusd4	86	51.183	Poecilia_latipinna
ENSRNOG00000011567	Rpusd4	87	50.000	ENSPMEG00000017534	rpusd4	86	50.000	Poecilia_mexicana
ENSRNOG00000011567	Rpusd4	91	49.153	ENSPREG00000005689	rpusd4	90	49.153	Poecilia_reticulata
ENSRNOG00000011567	Rpusd4	100	79.310	ENSPPYG00000004043	RPUSD4	100	79.310	Pongo_abelii
ENSRNOG00000011567	Rpusd4	80	79.459	ENSPCAG00000000753	RPUSD4	82	79.459	Procavia_capensis
ENSRNOG00000011567	Rpusd4	98	74.663	ENSPCOG00000020694	RPUSD4	100	74.663	Propithecus_coquereli
ENSRNOG00000011567	Rpusd4	99	81.551	ENSPVAG00000000988	RPUSD4	99	81.551	Pteropus_vampyrus
ENSRNOG00000011567	Rpusd4	86	51.360	ENSPNYG00000009652	rpusd4	84	51.360	Pundamilia_nyererei
ENSRNOG00000011567	Rpusd4	91	50.143	ENSPNAG00000012264	rpusd4	92	50.143	Pygocentrus_nattereri
ENSRNOG00000011567	Rpusd4	96	82.548	ENSRBIG00000034842	RPUSD4	100	80.371	Rhinopithecus_bieti
ENSRNOG00000011567	Rpusd4	96	82.548	ENSRROG00000039753	RPUSD4	100	80.371	Rhinopithecus_roxellana
ENSRNOG00000011567	Rpusd4	99	81.720	ENSSBOG00000030413	RPUSD4	100	81.720	Saimiri_boliviensis_boliviensis
ENSRNOG00000011567	Rpusd4	80	75.166	ENSSHAG00000008304	RPUSD4	100	75.166	Sarcophilus_harrisii
ENSRNOG00000011567	Rpusd4	90	55.202	ENSSFOG00015006203	rpusd4	93	55.202	Scleropages_formosus
ENSRNOG00000011567	Rpusd4	91	50.720	ENSSMAG00000020978	rpusd4	90	50.720	Scophthalmus_maximus
ENSRNOG00000011567	Rpusd4	89	49.560	ENSSDUG00000013399	rpusd4	89	49.560	Seriola_dumerili
ENSRNOG00000011567	Rpusd4	89	50.000	ENSSLDG00000023507	rpusd4	89	50.000	Seriola_lalandi_dorsalis
ENSRNOG00000011567	Rpusd4	89	61.765	ENSSPUG00000001401	RPUSD4	94	62.353	Sphenodon_punctatus
ENSRNOG00000011567	Rpusd4	88	52.071	ENSSPAG00000012163	rpusd4	86	52.071	Stegastes_partitus
ENSRNOG00000011567	Rpusd4	99	80.161	ENSSSCG00000015233	RPUSD4	99	80.161	Sus_scrofa
ENSRNOG00000011567	Rpusd4	79	60.667	ENSTGUG00000000773	RPUSD4	100	60.667	Taeniopygia_guttata
ENSRNOG00000011567	Rpusd4	86	50.909	ENSTRUG00000012283	rpusd4	84	50.909	Takifugu_rubripes
ENSRNOG00000011567	Rpusd4	88	48.711	ENSTNIG00000014676	rpusd4	88	48.711	Tetraodon_nigroviridis
ENSRNOG00000011567	Rpusd4	100	78.249	ENSTTRG00000001555	RPUSD4	100	78.249	Tursiops_truncatus
ENSRNOG00000011567	Rpusd4	100	78.780	ENSUMAG00000002219	RPUSD4	100	78.780	Ursus_maritimus
ENSRNOG00000011567	Rpusd4	70	81.887	ENSVPAG00000001066	RPUSD4	100	81.887	Vicugna_pacos
ENSRNOG00000011567	Rpusd4	100	79.101	ENSVVUG00000020101	RPUSD4	100	79.101	Vulpes_vulpes
ENSRNOG00000011567	Rpusd4	87	50.888	ENSXCOG00000004676	rpusd4	88	50.592	Xiphophorus_couchianus
ENSRNOG00000011567	Rpusd4	88	51.026	ENSXMAG00000023351	rpusd4	86	51.026	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001522	pseudouridine synthesis	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005759	mitochondrial matrix	-	IEA	Component
GO:0008033	tRNA processing	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0009982	pseudouridine synthase activity	-	IEA	Function
GO:0070131	positive regulation of mitochondrial translation	-	ISO	Process
GO:0070131	positive regulation of mitochondrial translation	-	ISS	Process