EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011688 (Gene tree)
Gene ID: 290729
Gene Symbol: Neil3
Alias: LOC290729|RGD1310562
Full Name: nei-like DNA glycosylase 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 59062 bases
Position: chr16:41079444-41138505
Accession: 1310562
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015623	zf-RanBP	PF00641.18	4.8e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015623	-	1975	-	ENSRNOP00000015623	606 (aa)	-	D3ZKJ8

Gene Model

Click here to download ENSRNOG00000011688's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03410	Base excision repair	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011688's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011688	Neil3	100	72.607	ENSG00000109674	NEIL3	100	72.607	Homo_sapiens
ENSRNOG00000011688	Neil3	100	50.000	ENSACIG00000002265	neil3	100	50.000	Amphilophus_citrinellus
ENSRNOG00000011688	Neil3	100	50.732	ENSATEG00000004193	neil3	100	50.732	Anabas_testudineus
ENSRNOG00000011688	Neil3	100	68.317	ENSANAG00000026464	NEIL3	100	68.317	Aotus_nancymaae
ENSRNOG00000011688	Neil3	100	50.977	ENSACLG00000011270	neil3	100	50.977	Astatotilapia_calliptera
ENSRNOG00000011688	Neil3	100	70.346	ENSBTAG00000005825	NEIL3	100	70.346	Bos_taurus
ENSRNOG00000011688	Neil3	100	71.947	ENSCJAG00000005464	NEIL3	100	71.947	Callithrix_jacchus
ENSRNOG00000011688	Neil3	100	70.511	ENSCHIG00000009157	NEIL3	100	70.511	Capra_hircus
ENSRNOG00000011688	Neil3	100	71.782	ENSTSYG00000014680	NEIL3	100	71.782	Carlito_syrichta
ENSRNOG00000011688	Neil3	85	74.464	ENSCAPG00000006333	NEIL3	98	74.464	Cavia_aperea
ENSRNOG00000011688	Neil3	100	73.806	ENSCPOG00000003297	NEIL3	100	73.806	Cavia_porcellus
ENSRNOG00000011688	Neil3	100	73.267	ENSCCAG00000018838	NEIL3	100	73.267	Cebus_capucinus
ENSRNOG00000011688	Neil3	100	72.982	ENSCLAG00000015661	NEIL3	100	72.982	Chinchilla_lanigera
ENSRNOG00000011688	Neil3	100	71.452	ENSCSAG00000003064	NEIL3	100	71.452	Chlorocebus_sabaeus
ENSRNOG00000011688	Neil3	77	77.119	ENSCHOG00000008101	NEIL3	77	77.119	Choloepus_hoffmanni
ENSRNOG00000011688	Neil3	100	71.122	ENSCANG00000043622	NEIL3	100	71.122	Colobus_angolensis_palliatus
ENSRNOG00000011688	Neil3	100	52.033	ENSCSEG00000003828	neil3	99	52.033	Cynoglossus_semilaevis
ENSRNOG00000011688	Neil3	100	51.555	ENSDARG00000020079	neil3	100	51.555	Danio_rerio
ENSRNOG00000011688	Neil3	86	71.785	ENSDNOG00000012236	NEIL3	100	71.785	Dasypus_novemcinctus
ENSRNOG00000011688	Neil3	100	71.782	ENSEASG00005022272	NEIL3	100	71.782	Equus_asinus_asinus
ENSRNOG00000011688	Neil3	100	71.947	ENSECAG00000009121	NEIL3	100	71.947	Equus_caballus
ENSRNOG00000011688	Neil3	75	63.436	ENSEEUG00000010848	NEIL3	100	63.436	Erinaceus_europaeus
ENSRNOG00000011688	Neil3	100	70.792	ENSFCAG00000004956	NEIL3	100	70.792	Felis_catus
ENSRNOG00000011688	Neil3	100	50.651	ENSHBUG00000023848	neil3	100	50.651	Haplochromis_burtoni
ENSRNOG00000011688	Neil3	86	74.472	ENSHGLG00000006643	NEIL3	100	74.472	Heterocephalus_glaber_female
ENSRNOG00000011688	Neil3	86	74.472	ENSHGLG00100006959	NEIL3	100	74.472	Heterocephalus_glaber_male
ENSRNOG00000011688	Neil3	100	73.311	ENSSTOG00000016245	NEIL3	100	73.311	Ictidomys_tridecemlineatus
ENSRNOG00000011688	Neil3	63	54.639	ENSLACG00000000308	NEIL3	99	54.639	Latimeria_chalumnae
ENSRNOG00000011688	Neil3	100	72.607	ENSMFAG00000002547	NEIL3	100	72.607	Macaca_fascicularis
ENSRNOG00000011688	Neil3	100	72.772	ENSMMUG00000007394	NEIL3	100	72.772	Macaca_mulatta
ENSRNOG00000011688	Neil3	100	72.442	ENSMNEG00000036177	NEIL3	100	72.442	Macaca_nemestrina
ENSRNOG00000011688	Neil3	100	50.404	ENSMAMG00000017052	neil3	100	50.404	Mastacembelus_armatus
ENSRNOG00000011688	Neil3	100	50.977	ENSMZEG00005001680	neil3	100	50.977	Maylandia_zebra
ENSRNOG00000011688	Neil3	90	60.036	ENSMODG00000003813	NEIL3	99	60.036	Monodelphis_domestica
ENSRNOG00000011688	Neil3	100	86.469	MGP_CAROLIEiJ_G0031052	Neil3	100	86.469	Mus_caroli
ENSRNOG00000011688	Neil3	100	85.809	ENSMUSG00000039396	Neil3	100	85.809	Mus_musculus
ENSRNOG00000011688	Neil3	100	84.653	MGP_PahariEiJ_G0021518	Neil3	100	84.653	Mus_pahari
ENSRNOG00000011688	Neil3	100	86.139	MGP_SPRETEiJ_G0032167	Neil3	100	86.139	Mus_spretus
ENSRNOG00000011688	Neil3	100	49.425	ENSNBRG00000013229	neil3	100	49.425	Neolamprologus_brichardi
ENSRNOG00000011688	Neil3	100	72.937	ENSNLEG00000016818	NEIL3	100	72.937	Nomascus_leucogenys
ENSRNOG00000011688	Neil3	100	72.982	ENSODEG00000004102	NEIL3	100	72.982	Octodon_degus
ENSRNOG00000011688	Neil3	100	50.883	ENSONIG00000001176	neil3	100	50.883	Oreochromis_niloticus
ENSRNOG00000011688	Neil3	99	71.285	ENSOCUG00000001040	NEIL3	99	71.285	Oryctolagus_cuniculus
ENSRNOG00000011688	Neil3	100	47.249	ENSOMEG00000014798	neil3	100	47.249	Oryzias_melastigma
ENSRNOG00000011688	Neil3	100	70.511	ENSOGAG00000012624	NEIL3	100	70.511	Otolemur_garnettii
ENSRNOG00000011688	Neil3	96	68.847	ENSOARG00000006852	NEIL3	100	70.811	Ovis_aries
ENSRNOG00000011688	Neil3	100	72.772	ENSPPAG00000035318	NEIL3	100	72.772	Pan_paniscus
ENSRNOG00000011688	Neil3	100	71.287	ENSPPRG00000003958	NEIL3	100	71.287	Panthera_pardus
ENSRNOG00000011688	Neil3	100	71.334	ENSPTIG00000012966	NEIL3	100	71.334	Panthera_tigris_altaica
ENSRNOG00000011688	Neil3	100	73.267	ENSPTRG00000016617	NEIL3	100	73.267	Pan_troglodytes
ENSRNOG00000011688	Neil3	100	72.772	ENSPANG00000014727	NEIL3	100	72.772	Papio_anubis
ENSRNOG00000011688	Neil3	100	49.592	ENSPFOG00000018858	neil3	100	49.592	Poecilia_formosa
ENSRNOG00000011688	Neil3	100	49.592	ENSPLAG00000010685	neil3	100	49.592	Poecilia_latipinna
ENSRNOG00000011688	Neil3	100	49.918	ENSPMEG00000013971	neil3	100	49.918	Poecilia_mexicana
ENSRNOG00000011688	Neil3	100	49.344	ENSPREG00000009841	neil3	100	49.344	Poecilia_reticulata
ENSRNOG00000011688	Neil3	68	72.635	ENSPCAG00000006386	NEIL3	81	72.635	Procavia_capensis
ENSRNOG00000011688	Neil3	80	71.533	ENSPCOG00000010888	NEIL3	100	71.533	Propithecus_coquereli
ENSRNOG00000011688	Neil3	99	70.364	ENSPVAG00000002255	NEIL3	99	70.364	Pteropus_vampyrus
ENSRNOG00000011688	Neil3	100	50.984	ENSPNYG00000021276	neil3	100	50.984	Pundamilia_nyererei
ENSRNOG00000011688	Neil3	98	48.148	ENSPNAG00000019983	neil3	100	48.485	Pygocentrus_nattereri
ENSRNOG00000011688	Neil3	100	71.782	ENSRBIG00000023002	NEIL3	100	71.782	Rhinopithecus_bieti
ENSRNOG00000011688	Neil3	100	71.617	ENSRROG00000000069	NEIL3	100	71.617	Rhinopithecus_roxellana
ENSRNOG00000011688	Neil3	100	72.772	ENSSBOG00000032601	NEIL3	100	72.772	Saimiri_boliviensis_boliviensis
ENSRNOG00000011688	Neil3	100	64.869	ENSSHAG00000007680	NEIL3	100	64.869	Sarcophilus_harrisii
ENSRNOG00000011688	Neil3	100	50.732	ENSSMAG00000009621	neil3	100	50.732	Scophthalmus_maximus
ENSRNOG00000011688	Neil3	100	70.840	ENSSSCG00000015771	NEIL3	100	70.840	Sus_scrofa
ENSRNOG00000011688	Neil3	100	72.323	ENSTTRG00000013224	NEIL3	100	72.323	Tursiops_truncatus
ENSRNOG00000011688	Neil3	100	63.487	ENSVPAG00000005020	NEIL3	100	63.487	Vicugna_pacos
ENSRNOG00000011688	Neil3	85	48.343	ENSXCOG00000014831	neil3	94	48.343	Xiphophorus_couchianus
ENSRNOG00000011688	Neil3	100	49.266	ENSXMAG00000028638	neil3	100	49.266	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000405	bubble DNA binding	-	IEA	Function
GO:0000405	bubble DNA binding	-	ISO	Function
GO:0003684	damaged DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	-	IEA	Function
GO:0003690	double-stranded DNA binding	-	ISO	Function
GO:0003697	single-stranded DNA binding	-	IEA	Function
GO:0003697	single-stranded DNA binding	-	ISO	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	21873635.	IBA	Function
GO:0003906	DNA-(apurinic or apyrimidinic site) endonuclease activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006284	base-excision repair	21873635.	IBA	Process
GO:0006284	base-excision repair	-	ISO	Process
GO:0006289	nucleotide-excision repair	-	IEA	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0019104	DNA N-glycosylase activity	21873635.	IBA	Function
GO:0019104	DNA N-glycosylase activity	-	ISO	Function