EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011709 (Gene tree)
Gene ID: 362609
Gene Symbol: Pum1
Alias: LOC362609
Full Name: pumilio RNA-binding family member 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 130582 bases
Position: chr5:148781222-148911803
Accession: 1307190
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	1	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	2	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	3	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	4	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	5	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	6	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	7	8
ENSRNOP00000015831	PUF	PF00806.19	1.4e-69	8	8

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000015831	-	5364	XM_006239029	ENSRNOP00000015831	1186 (aa)	XP_006239091	D3Z8L5

Gene Model

Click here to download ENSRNOG00000011709's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011709's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000011709	Pum1	86	87.059	ENSRNOG00000006180	Pum2	100	88.592

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011709	Pum1	100	98.988	ENSG00000134644	PUM1	100	100.000	Homo_sapiens
ENSRNOG00000011709	Pum1	90	91.768	ENSAPOG00000021632	pum1	100	83.087	Acanthochromis_polyacanthus
ENSRNOG00000011709	Pum1	100	98.655	ENSAMEG00000017656	PUM1	97	98.655	Ailuropoda_melanoleuca
ENSRNOG00000011709	Pum1	100	74.314	ENSACIG00000021013	pum1	100	75.579	Amphilophus_citrinellus
ENSRNOG00000011709	Pum1	90	91.768	ENSAOCG00000003944	pum1	100	77.907	Amphiprion_ocellaris
ENSRNOG00000011709	Pum1	90	91.768	ENSAPEG00000014550	pum1	100	77.907	Amphiprion_percula
ENSRNOG00000011709	Pum1	90	91.768	ENSATEG00000016004	pum1	100	83.087	Anabas_testudineus
ENSRNOG00000011709	Pum1	100	96.720	ENSAPLG00000009351	PUM1	100	96.720	Anas_platyrhynchos
ENSRNOG00000011709	Pum1	100	95.034	ENSACAG00000000682	PUM1	98	94.949	Anolis_carolinensis
ENSRNOG00000011709	Pum1	100	98.821	ENSANAG00000027865	PUM1	100	99.306	Aotus_nancymaae
ENSRNOG00000011709	Pum1	90	76.274	ENSACLG00000019354	pum1	100	77.891	Astatotilapia_calliptera
ENSRNOG00000011709	Pum1	100	78.094	ENSAMXG00000020607	pum1	96	78.512	Astyanax_mexicanus
ENSRNOG00000011709	Pum1	100	98.904	ENSBTAG00000018979	PUM1	100	99.306	Bos_taurus
ENSRNOG00000011709	Pum1	100	98.654	ENSCJAG00000006035	PUM1	100	99.515	Callithrix_jacchus
ENSRNOG00000011709	Pum1	100	96.468	ENSCAFG00000011205	PUM1	100	96.468	Canis_familiaris
ENSRNOG00000011709	Pum1	92	96.633	ENSCAFG00020024616	PUM1	98	99.272	Canis_lupus_dingo
ENSRNOG00000011709	Pum1	100	98.904	ENSCHIG00000012952	PUM1	100	99.272	Capra_hircus
ENSRNOG00000011709	Pum1	100	98.402	ENSTSYG00000008868	PUM1	100	98.611	Carlito_syrichta
ENSRNOG00000011709	Pum1	100	98.738	ENSCPOG00000031613	PUM1	100	99.001	Cavia_porcellus
ENSRNOG00000011709	Pum1	100	96.549	ENSCATG00000017991	PUM1	100	99.306	Cercocebus_atys
ENSRNOG00000011709	Pum1	100	98.823	ENSCLAG00000007662	PUM1	100	100.000	Chinchilla_lanigera
ENSRNOG00000011709	Pum1	100	97.833	ENSCSAG00000001028	PUM1	100	97.833	Chlorocebus_sabaeus
ENSRNOG00000011709	Pum1	93	95.827	ENSCHOG00000010245	PUM1	93	95.827	Choloepus_hoffmanni
ENSRNOG00000011709	Pum1	100	96.801	ENSCPBG00000009288	PUM1	100	98.058	Chrysemys_picta_bellii
ENSRNOG00000011709	Pum1	100	98.822	ENSCANG00000042606	PUM1	100	99.515	Colobus_angolensis_palliatus
ENSRNOG00000011709	Pum1	100	99.325	ENSCGRG00001024949	Pum1	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000011709	Pum1	100	99.325	ENSCGRG00000014197	Pum1	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000011709	Pum1	90	76.067	ENSCSEG00000015981	pum1	100	77.572	Cynoglossus_semilaevis
ENSRNOG00000011709	Pum1	100	73.675	ENSCVAG00000007043	pum1	100	74.959	Cyprinodon_variegatus
ENSRNOG00000011709	Pum1	100	78.846	ENSDARG00000099256	pum1	100	79.181	Danio_rerio
ENSRNOG00000011709	Pum1	100	98.150	ENSDNOG00000010939	PUM1	100	98.150	Dasypus_novemcinctus
ENSRNOG00000011709	Pum1	85	100.000	ENSDORG00000001875	Pum1	100	100.000	Dipodomys_ordii
ENSRNOG00000011709	Pum1	88	93.066	ENSETEG00000004355	PUM1	87	93.066	Echinops_telfairi
ENSRNOG00000011709	Pum1	100	98.569	ENSEASG00005010813	PUM1	100	98.569	Equus_asinus_asinus
ENSRNOG00000011709	Pum1	100	98.402	ENSECAG00000021369	PUM1	100	98.402	Equus_caballus
ENSRNOG00000011709	Pum1	76	99.322	ENSEEUG00000003871	PUM1	74	99.322	Erinaceus_europaeus
ENSRNOG00000011709	Pum1	100	76.132	ENSELUG00000002409	pum1	100	83.623	Esox_lucius
ENSRNOG00000011709	Pum1	100	98.738	ENSFCAG00000010374	PUM1	100	99.583	Felis_catus
ENSRNOG00000011709	Pum1	100	95.561	ENSFALG00000001214	PUM1	97	94.556	Ficedula_albicollis
ENSRNOG00000011709	Pum1	100	98.570	ENSFDAG00000011319	PUM1	100	98.627	Fukomys_damarensis
ENSRNOG00000011709	Pum1	100	96.888	ENSGALG00000042598	PUM1	100	96.888	Gallus_gallus
ENSRNOG00000011709	Pum1	90	87.991	ENSGAFG00000015617	pum1	100	82.030	Gambusia_affinis
ENSRNOG00000011709	Pum1	100	74.422	ENSGACG00000005717	pum1	100	75.371	Gasterosteus_aculeatus
ENSRNOG00000011709	Pum1	100	96.468	ENSGAGG00000001290	PUM1	100	96.468	Gopherus_agassizii
ENSRNOG00000011709	Pum1	100	98.822	ENSGGOG00000011983	PUM1	100	99.515	Gorilla_gorilla
ENSRNOG00000011709	Pum1	100	74.007	ENSHBUG00000018718	pum1	100	75.372	Haplochromis_burtoni
ENSRNOG00000011709	Pum1	100	98.402	ENSHGLG00000013819	Pum1	100	98.502	Heterocephalus_glaber_female
ENSRNOG00000011709	Pum1	100	98.402	ENSHGLG00100008621	Pum1	100	98.502	Heterocephalus_glaber_male
ENSRNOG00000011709	Pum1	100	76.789	ENSIPUG00000020421	pum1	100	77.639	Ictalurus_punctatus
ENSRNOG00000011709	Pum1	100	99.074	ENSSTOG00000010757	PUM1	100	99.306	Ictidomys_tridecemlineatus
ENSRNOG00000011709	Pum1	100	98.737	ENSJJAG00000000530	Pum1	100	99.306	Jaculus_jaculus
ENSRNOG00000011709	Pum1	100	73.675	ENSKMAG00000003481	pum1	100	74.959	Kryptolebias_marmoratus
ENSRNOG00000011709	Pum1	100	73.383	ENSLBEG00000002527	pum1	100	75.497	Labrus_bergylta
ENSRNOG00000011709	Pum1	100	85.928	ENSLACG00000017188	PUM1	99	86.095	Latimeria_chalumnae
ENSRNOG00000011709	Pum1	100	87.563	ENSLOCG00000005210	pum1	99	87.730	Lepisosteus_oculatus
ENSRNOG00000011709	Pum1	100	97.897	ENSLAFG00000003178	PUM1	100	97.897	Loxodonta_africana
ENSRNOG00000011709	Pum1	100	98.407	ENSMFAG00000010291	PUM1	100	99.306	Macaca_fascicularis
ENSRNOG00000011709	Pum1	100	98.407	ENSMMUG00000013520	PUM1	100	99.515	Macaca_mulatta
ENSRNOG00000011709	Pum1	100	98.822	ENSMNEG00000034639	PUM1	100	99.515	Macaca_nemestrina
ENSRNOG00000011709	Pum1	100	98.822	ENSMLEG00000038743	PUM1	100	99.515	Mandrillus_leucophaeus
ENSRNOG00000011709	Pum1	100	74.255	ENSMAMG00000011606	pum1	100	75.620	Mastacembelus_armatus
ENSRNOG00000011709	Pum1	100	74.007	ENSMZEG00005005834	pum1	100	75.372	Maylandia_zebra
ENSRNOG00000011709	Pum1	100	96.636	ENSMGAG00000000724	PUM1	100	96.636	Meleagris_gallopavo
ENSRNOG00000011709	Pum1	100	99.159	ENSMAUG00000022090	Pum1	100	100.000	Mesocricetus_auratus
ENSRNOG00000011709	Pum1	100	98.570	ENSMICG00000007713	-	100	99.272	Microcebus_murinus
ENSRNOG00000011709	Pum1	99	96.878	ENSMICG00000012213	-	99	96.878	Microcebus_murinus
ENSRNOG00000011709	Pum1	100	99.075	ENSMOCG00000015463	Pum1	100	99.306	Microtus_ochrogaster
ENSRNOG00000011709	Pum1	90	88.453	ENSMMOG00000019817	pum1	100	82.452	Mola_mola
ENSRNOG00000011709	Pum1	100	96.975	ENSMODG00000017067	PUM1	100	96.975	Monodelphis_domestica
ENSRNOG00000011709	Pum1	90	88.684	ENSMALG00000016399	pum1	100	82.664	Monopterus_albus
ENSRNOG00000011709	Pum1	100	99.578	MGP_CAROLIEiJ_G0026549	Pum1	100	99.578	Mus_caroli
ENSRNOG00000011709	Pum1	100	99.663	ENSMUSG00000028580	Pum1	100	100.000	Mus_musculus
ENSRNOG00000011709	Pum1	100	99.663	MGP_PahariEiJ_G0028881	Pum1	100	100.000	Mus_pahari
ENSRNOG00000011709	Pum1	100	99.663	MGP_SPRETEiJ_G0027529	Pum1	100	100.000	Mus_spretus
ENSRNOG00000011709	Pum1	100	98.485	ENSMPUG00000015454	PUM1	100	98.485	Mustela_putorius_furo
ENSRNOG00000011709	Pum1	100	98.484	ENSMLUG00000006490	PUM1	100	98.484	Myotis_lucifugus
ENSRNOG00000011709	Pum1	100	98.990	ENSNGAG00000002378	Pum1	100	99.251	Nannospalax_galili
ENSRNOG00000011709	Pum1	80	81.266	ENSNBRG00000010689	pum1	100	83.416	Neolamprologus_brichardi
ENSRNOG00000011709	Pum1	100	97.475	ENSNLEG00000001151	PUM1	100	98.611	Nomascus_leucogenys
ENSRNOG00000011709	Pum1	76	100.000	ENSMEUG00000000976	-	75	97.143	Notamacropus_eugenii
ENSRNOG00000011709	Pum1	84	100.000	ENSOPRG00000001776	PUM1	72	100.000	Ochotona_princeps
ENSRNOG00000011709	Pum1	100	98.737	ENSODEG00000003465	PUM1	100	98.876	Octodon_degus
ENSRNOG00000011709	Pum1	100	74.590	ENSONIG00000002290	pum1	100	75.702	Oreochromis_niloticus
ENSRNOG00000011709	Pum1	81	77.357	ENSOANG00000004902	-	100	77.357	Ornithorhynchus_anatinus
ENSRNOG00000011709	Pum1	100	98.568	ENSOCUG00000008641	PUM1	99	98.568	Oryctolagus_cuniculus
ENSRNOG00000011709	Pum1	100	74.587	ENSORLG00000011482	pum1	100	75.783	Oryzias_latipes
ENSRNOG00000011709	Pum1	100	74.670	ENSORLG00020019461	pum1	100	75.783	Oryzias_latipes_hni
ENSRNOG00000011709	Pum1	100	74.670	ENSORLG00015011375	pum1	100	75.865	Oryzias_latipes_hsok
ENSRNOG00000011709	Pum1	90	92.978	ENSOMEG00000009312	pum1	100	82.452	Oryzias_melastigma
ENSRNOG00000011709	Pum1	100	95.718	ENSOGAG00000011063	PUM1	100	95.718	Otolemur_garnettii
ENSRNOG00000011709	Pum1	100	97.729	ENSOARG00000001899	PUM1	100	99.272	Ovis_aries
ENSRNOG00000011709	Pum1	100	98.822	ENSPPAG00000044003	PUM1	100	99.515	Pan_paniscus
ENSRNOG00000011709	Pum1	100	98.822	ENSPPRG00000001370	PUM1	100	99.306	Panthera_pardus
ENSRNOG00000011709	Pum1	100	98.653	ENSPTIG00000010798	PUM1	100	99.306	Panthera_tigris_altaica
ENSRNOG00000011709	Pum1	100	98.822	ENSPTRG00000000453	PUM1	100	99.515	Pan_troglodytes
ENSRNOG00000011709	Pum1	100	98.822	ENSPANG00000016338	PUM1	100	99.306	Papio_anubis
ENSRNOG00000011709	Pum1	100	78.311	ENSPKIG00000010578	pum1	100	77.970	Paramormyrops_kingsleyae
ENSRNOG00000011709	Pum1	100	97.054	ENSPSIG00000014118	PUM1	100	97.054	Pelodiscus_sinensis
ENSRNOG00000011709	Pum1	80	79.607	ENSPMGG00000005836	pum1	100	81.863	Periophthalmus_magnuspinnatus
ENSRNOG00000011709	Pum1	100	99.243	ENSPEMG00000010009	Pum1	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000011709	Pum1	100	96.975	ENSPCIG00000014151	PUM1	100	97.101	Phascolarctos_cinereus
ENSRNOG00000011709	Pum1	95	76.970	ENSPFOG00000007289	pum1	99	81.804	Poecilia_formosa
ENSRNOG00000011709	Pum1	100	73.049	ENSPLAG00000007256	pum1	100	77.824	Poecilia_latipinna
ENSRNOG00000011709	Pum1	90	77.051	ENSPMEG00000019543	pum1	99	78.013	Poecilia_mexicana
ENSRNOG00000011709	Pum1	100	74.089	ENSPREG00000005195	pum1	100	80.923	Poecilia_reticulata
ENSRNOG00000011709	Pum1	100	96.865	ENSPPYG00000001621	PUM1	100	96.865	Pongo_abelii
ENSRNOG00000011709	Pum1	78	98.347	ENSPCAG00000001979	PUM1	74	98.347	Procavia_capensis
ENSRNOG00000011709	Pum1	100	98.570	ENSPCOG00000004398	PUM1	100	99.272	Propithecus_coquereli
ENSRNOG00000011709	Pum1	100	96.465	ENSPVAG00000005207	PUM1	97	96.465	Pteropus_vampyrus
ENSRNOG00000011709	Pum1	100	74.089	ENSPNYG00000009518	pum1	100	75.455	Pundamilia_nyererei
ENSRNOG00000011709	Pum1	100	78.512	ENSPNAG00000026728	pum1	100	79.854	Pygocentrus_nattereri
ENSRNOG00000011709	Pum1	100	98.822	ENSRBIG00000042521	PUM1	100	99.306	Rhinopithecus_bieti
ENSRNOG00000011709	Pum1	100	98.988	ENSRROG00000020156	PUM1	100	99.515	Rhinopithecus_roxellana
ENSRNOG00000011709	Pum1	100	98.738	ENSSBOG00000032037	PUM1	100	99.515	Saimiri_boliviensis_boliviensis
ENSRNOG00000011709	Pum1	100	96.807	ENSSHAG00000010918	PUM1	100	96.807	Sarcophilus_harrisii
ENSRNOG00000011709	Pum1	90	88.684	ENSSMAG00000010918	pum1	100	82.664	Scophthalmus_maximus
ENSRNOG00000011709	Pum1	100	74.089	ENSSDUG00000009021	pum1	100	76.281	Seriola_dumerili
ENSRNOG00000011709	Pum1	95	75.597	ENSSLDG00000009667	pum1	100	78.238	Seriola_lalandi_dorsalis
ENSRNOG00000011709	Pum1	94	99.558	ENSSARG00000003055	PUM1	91	99.558	Sorex_araneus
ENSRNOG00000011709	Pum1	100	96.296	ENSSPUG00000006267	PUM1	100	96.296	Sphenodon_punctatus
ENSRNOG00000011709	Pum1	90	91.768	ENSSPAG00000016636	pum1	100	77.907	Stegastes_partitus
ENSRNOG00000011709	Pum1	100	98.823	ENSSSCG00000003591	PUM1	100	99.583	Sus_scrofa
ENSRNOG00000011709	Pum1	100	73.985	ENSTRUG00000013121	pum1	100	83.045	Takifugu_rubripes
ENSRNOG00000011709	Pum1	100	74.480	ENSTNIG00000016983	pum1	99	76.432	Tetraodon_nigroviridis
ENSRNOG00000011709	Pum1	87	96.341	ENSTBEG00000013810	PUM1	88	96.341	Tupaia_belangeri
ENSRNOG00000011709	Pum1	92	98.540	ENSTTRG00000007436	PUM1	90	98.540	Tursiops_truncatus
ENSRNOG00000011709	Pum1	99	98.706	ENSUAMG00000018262	-	100	98.706	Ursus_americanus
ENSRNOG00000011709	Pum1	95	98.792	ENSUMAG00000009211	PUM1	100	98.792	Ursus_maritimus
ENSRNOG00000011709	Pum1	92	98.983	ENSVPAG00000005902	PUM1	92	98.983	Vicugna_pacos
ENSRNOG00000011709	Pum1	100	98.738	ENSVVUG00000014631	PUM1	100	98.792	Vulpes_vulpes
ENSRNOG00000011709	Pum1	100	86.902	ENSXETG00000012904	pum1	99	86.062	Xenopus_tropicalis
ENSRNOG00000011709	Pum1	100	73.344	ENSXMAG00000002945	pum1	100	76.788	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000932	P-body	-	IEA	Component
GO:0000932	P-body	-	ISO	Component
GO:0003723	RNA binding	-	ISO	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0007283	spermatogenesis	-	IEA	Process
GO:0007283	spermatogenesis	-	ISO	Process
GO:0008344	adult locomotory behavior	-	IEA	Process
GO:0008344	adult locomotory behavior	-	ISO	Process
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010608	posttranscriptional regulation of gene expression	-	ISO	Process
GO:0016441	posttranscriptional gene silencing	-	ISO	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	IEA	Process
GO:0035196	production of miRNAs involved in gene silencing by miRNA	-	ISO	Process
GO:0035198	miRNA binding	-	IEA	Function
GO:0035198	miRNA binding	-	ISO	Function
GO:0043488	regulation of mRNA stability	-	ISO	Process
GO:0048863	stem cell differentiation	-	IEA	Process
GO:0048863	stem cell differentiation	-	ISO	Process
GO:0051726	regulation of cell cycle	-	IEA	Process
GO:0051726	regulation of cell cycle	-	ISO	Process
GO:0051983	regulation of chromosome segregation	-	IEA	Process
GO:0051983	regulation of chromosome segregation	-	ISO	Process
GO:0061157	mRNA destabilization	-	IEA	Process
GO:0061157	mRNA destabilization	-	ISO	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	IEA	Process
GO:1900246	positive regulation of RIG-I signaling pathway	-	ISO	Process
GO:2000637	positive regulation of gene silencing by miRNA	-	IEA	Process
GO:2000637	positive regulation of gene silencing by miRNA	-	ISO	Process