EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011785 (Gene tree)
Gene ID: 362229
Gene Symbol: Xrn2
Alias: LOC362229
Full Name: 5'-3' exoribonuclease 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 72976 bases
Position: chr3:141225290-141298265
Accession: 1310218
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000016350	XRN_N	PF03159.18	9.2e-103	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000016351	-	3401	XM_006235156	ENSRNOP00000016350	951 (aa)	XP_006235218	D4A914

Gene Model

Click here to download ENSRNOG00000011785's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011785's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011785	Xrn2	100	96.740	ENSG00000088930	XRN2	100	96.740	Homo_sapiens
ENSRNOG00000011785	Xrn2	97	72.436	ENSAPOG00000009818	xrn2	100	71.152	Acanthochromis_polyacanthus
ENSRNOG00000011785	Xrn2	100	96.425	ENSAMEG00000012581	XRN2	100	96.425	Ailuropoda_melanoleuca
ENSRNOG00000011785	Xrn2	90	71.445	ENSACIG00000015047	xrn2	95	75.240	Amphilophus_citrinellus
ENSRNOG00000011785	Xrn2	97	72.756	ENSAOCG00000023632	xrn2	100	71.560	Amphiprion_ocellaris
ENSRNOG00000011785	Xrn2	97	72.679	ENSAPEG00000014871	xrn2	100	71.385	Amphiprion_percula
ENSRNOG00000011785	Xrn2	95	72.264	ENSATEG00000001273	xrn2	98	71.504	Anabas_testudineus
ENSRNOG00000011785	Xrn2	97	82.992	ENSAPLG00000013869	XRN2	99	83.423	Anas_platyrhynchos
ENSRNOG00000011785	Xrn2	100	80.415	ENSACAG00000005565	XRN2	100	79.896	Anolis_carolinensis
ENSRNOG00000011785	Xrn2	100	96.004	ENSANAG00000020126	XRN2	100	96.004	Aotus_nancymaae
ENSRNOG00000011785	Xrn2	90	74.596	ENSACLG00000010522	xrn2	96	76.667	Astatotilapia_calliptera
ENSRNOG00000011785	Xrn2	100	71.808	ENSAMXG00000018301	xrn2	100	71.808	Astyanax_mexicanus
ENSRNOG00000011785	Xrn2	100	94.328	ENSBTAG00000011304	XRN2	100	94.328	Bos_taurus
ENSRNOG00000011785	Xrn2	86	55.594	WBGene00006964	xrn-2	89	54.453	Caenorhabditis_elegans
ENSRNOG00000011785	Xrn2	100	96.109	ENSCJAG00000005611	XRN2	100	96.109	Callithrix_jacchus
ENSRNOG00000011785	Xrn2	100	96.425	ENSCAFG00000005185	XRN2	100	96.425	Canis_familiaris
ENSRNOG00000011785	Xrn2	100	96.425	ENSCAFG00020027479	XRN2	100	96.425	Canis_lupus_dingo
ENSRNOG00000011785	Xrn2	100	94.433	ENSCHIG00000006921	XRN2	100	94.433	Capra_hircus
ENSRNOG00000011785	Xrn2	100	95.584	ENSTSYG00000008315	XRN2	100	95.584	Carlito_syrichta
ENSRNOG00000011785	Xrn2	97	82.004	ENSCAPG00000010773	XRN2	99	82.004	Cavia_aperea
ENSRNOG00000011785	Xrn2	100	97.056	ENSCPOG00000009407	XRN2	100	97.056	Cavia_porcellus
ENSRNOG00000011785	Xrn2	100	96.845	ENSCATG00000040350	XRN2	100	96.845	Cercocebus_atys
ENSRNOG00000011785	Xrn2	100	96.951	ENSCLAG00000013419	XRN2	100	96.951	Chinchilla_lanigera
ENSRNOG00000011785	Xrn2	100	96.845	ENSCSAG00000011094	XRN2	100	96.845	Chlorocebus_sabaeus
ENSRNOG00000011785	Xrn2	68	99.462	ENSCHOG00000013404	XRN2	70	99.462	Choloepus_hoffmanni
ENSRNOG00000011785	Xrn2	100	84.167	ENSCPBG00000023533	XRN2	100	84.167	Chrysemys_picta_bellii
ENSRNOG00000011785	Xrn2	86	60.024	ENSCING00000022336	-	100	60.382	Ciona_intestinalis
ENSRNOG00000011785	Xrn2	87	58.473	ENSCSAVG00000011217	-	100	61.407	Ciona_savignyi
ENSRNOG00000011785	Xrn2	100	96.845	ENSCANG00000040240	XRN2	100	96.845	Colobus_angolensis_palliatus
ENSRNOG00000011785	Xrn2	98	97.634	ENSCGRG00001010676	Xrn2	99	97.634	Cricetulus_griseus_chok1gshd
ENSRNOG00000011785	Xrn2	97	96.875	ENSCGRG00000006378	Xrn2	99	96.875	Cricetulus_griseus_crigri
ENSRNOG00000011785	Xrn2	54	72.941	ENSCSEG00000005628	xrn2	100	72.745	Cynoglossus_semilaevis
ENSRNOG00000011785	Xrn2	89	71.954	ENSCVAG00000018999	xrn2	98	77.714	Cyprinodon_variegatus
ENSRNOG00000011785	Xrn2	100	70.359	ENSDARG00000101900	xrn2	96	78.203	Danio_rerio
ENSRNOG00000011785	Xrn2	100	96.004	ENSDNOG00000001895	XRN2	100	96.004	Dasypus_novemcinctus
ENSRNOG00000011785	Xrn2	100	94.111	ENSDORG00000005434	Xrn2	100	94.111	Dipodomys_ordii
ENSRNOG00000011785	Xrn2	86	55.904	FBgn0031868	Rat1	88	55.235	Drosophila_melanogaster
ENSRNOG00000011785	Xrn2	100	82.755	ENSETEG00000001740	XRN2	93	93.917	Echinops_telfairi
ENSRNOG00000011785	Xrn2	84	71.618	ENSEBUG00000016136	xrn2	100	71.498	Eptatretus_burgeri
ENSRNOG00000011785	Xrn2	100	96.109	ENSEASG00005002484	XRN2	100	96.109	Equus_asinus_asinus
ENSRNOG00000011785	Xrn2	99	96.203	ENSECAG00000018988	XRN2	96	100.000	Equus_caballus
ENSRNOG00000011785	Xrn2	80	100.000	ENSEEUG00000009265	XRN2	80	100.000	Erinaceus_europaeus
ENSRNOG00000011785	Xrn2	100	70.348	ENSELUG00000000552	xrn2	100	71.209	Esox_lucius
ENSRNOG00000011785	Xrn2	100	96.215	ENSFCAG00000007970	XRN2	100	96.215	Felis_catus
ENSRNOG00000011785	Xrn2	100	82.285	ENSFALG00000004508	XRN2	100	82.704	Ficedula_albicollis
ENSRNOG00000011785	Xrn2	100	96.635	ENSFDAG00000016311	XRN2	100	96.635	Fukomys_damarensis
ENSRNOG00000011785	Xrn2	54	70.420	ENSFHEG00000013039	xrn2	98	70.420	Fundulus_heteroclitus
ENSRNOG00000011785	Xrn2	86	73.755	ENSGMOG00000013436	xrn2	100	73.633	Gadus_morhua
ENSRNOG00000011785	Xrn2	100	82.513	ENSGALG00000008372	XRN2	100	82.408	Gallus_gallus
ENSRNOG00000011785	Xrn2	89	75.000	ENSGAFG00000014284	xrn2	98	75.000	Gambusia_affinis
ENSRNOG00000011785	Xrn2	87	75.361	ENSGACG00000011870	xrn2	100	75.361	Gasterosteus_aculeatus
ENSRNOG00000011785	Xrn2	100	83.958	ENSGAGG00000004884	XRN2	100	83.958	Gopherus_agassizii
ENSRNOG00000011785	Xrn2	100	96.951	ENSGGOG00000013738	XRN2	100	96.951	Gorilla_gorilla
ENSRNOG00000011785	Xrn2	54	74.664	ENSHBUG00000005077	xrn2	96	76.667	Haplochromis_burtoni
ENSRNOG00000011785	Xrn2	100	95.689	ENSHGLG00000014831	XRN2	100	95.689	Heterocephalus_glaber_female
ENSRNOG00000011785	Xrn2	100	95.689	ENSHGLG00100013130	XRN2	100	95.689	Heterocephalus_glaber_male
ENSRNOG00000011785	Xrn2	99	68.889	ENSHCOG00000011994	xrn2	99	69.706	Hippocampus_comes
ENSRNOG00000011785	Xrn2	100	70.438	ENSIPUG00000006639	xrn2	100	70.438	Ictalurus_punctatus
ENSRNOG00000011785	Xrn2	100	96.740	ENSSTOG00000000589	XRN2	100	96.740	Ictidomys_tridecemlineatus
ENSRNOG00000011785	Xrn2	100	96.215	ENSJJAG00000022128	Xrn2	100	96.215	Jaculus_jaculus
ENSRNOG00000011785	Xrn2	54	80.273	ENSLBEG00000010041	xrn2	100	79.883	Labrus_bergylta
ENSRNOG00000011785	Xrn2	94	76.974	ENSLACG00000008307	XRN2	99	78.896	Latimeria_chalumnae
ENSRNOG00000011785	Xrn2	99	72.803	ENSLOCG00000016874	xrn2	100	72.803	Lepisosteus_oculatus
ENSRNOG00000011785	Xrn2	100	95.268	ENSLAFG00000014624	XRN2	100	95.268	Loxodonta_africana
ENSRNOG00000011785	Xrn2	100	96.845	ENSMFAG00000038122	XRN2	100	96.845	Macaca_fascicularis
ENSRNOG00000011785	Xrn2	100	96.845	ENSMMUG00000011405	XRN2	100	96.845	Macaca_mulatta
ENSRNOG00000011785	Xrn2	100	96.740	ENSMNEG00000040626	XRN2	100	96.740	Macaca_nemestrina
ENSRNOG00000011785	Xrn2	100	96.740	ENSMLEG00000041897	XRN2	100	96.740	Mandrillus_leucophaeus
ENSRNOG00000011785	Xrn2	95	73.799	ENSMAMG00000008633	xrn2	97	72.999	Mastacembelus_armatus
ENSRNOG00000011785	Xrn2	90	76.559	ENSMZEG00005022362	xrn2	97	76.559	Maylandia_zebra
ENSRNOG00000011785	Xrn2	99	81.146	ENSMGAG00000003196	XRN2	99	81.042	Meleagris_gallopavo
ENSRNOG00000011785	Xrn2	100	97.581	ENSMAUG00000021842	Xrn2	100	97.581	Mesocricetus_auratus
ENSRNOG00000011785	Xrn2	100	95.899	ENSMICG00000008126	XRN2	100	95.899	Microcebus_murinus
ENSRNOG00000011785	Xrn2	100	97.161	ENSMOCG00000012588	Xrn2	100	97.161	Microtus_ochrogaster
ENSRNOG00000011785	Xrn2	89	74.570	ENSMMOG00000017576	xrn2	96	75.000	Mola_mola
ENSRNOG00000011785	Xrn2	100	89.905	ENSMODG00000006163	XRN2	100	89.905	Monodelphis_domestica
ENSRNOG00000011785	Xrn2	91	73.034	ENSMALG00000011355	xrn2	99	73.034	Monopterus_albus
ENSRNOG00000011785	Xrn2	100	97.476	MGP_CAROLIEiJ_G0024400	Xrn2	100	97.476	Mus_caroli
ENSRNOG00000011785	Xrn2	100	97.687	ENSMUSG00000027433	Xrn2	100	97.687	Mus_musculus
ENSRNOG00000011785	Xrn2	100	97.476	MGP_PahariEiJ_G0025843	Xrn2	100	97.476	Mus_pahari
ENSRNOG00000011785	Xrn2	100	97.687	MGP_SPRETEiJ_G0025318	Xrn2	100	97.687	Mus_spretus
ENSRNOG00000011785	Xrn2	100	94.628	ENSMPUG00000001198	XRN2	93	94.628	Mustela_putorius_furo
ENSRNOG00000011785	Xrn2	100	96.320	ENSMLUG00000001536	XRN2	100	96.320	Myotis_lucifugus
ENSRNOG00000011785	Xrn2	100	97.161	ENSNGAG00000018138	Xrn2	100	97.161	Nannospalax_galili
ENSRNOG00000011785	Xrn2	90	76.763	ENSNBRG00000008062	xrn2	97	76.763	Neolamprologus_brichardi
ENSRNOG00000011785	Xrn2	100	96.740	ENSNLEG00000009991	XRN2	100	96.740	Nomascus_leucogenys
ENSRNOG00000011785	Xrn2	66	97.778	ENSMEUG00000008622	-	67	97.778	Notamacropus_eugenii
ENSRNOG00000011785	Xrn2	75	79.058	ENSOPRG00000001397	-	77	79.058	Ochotona_princeps
ENSRNOG00000011785	Xrn2	98	87.392	ENSODEG00000000860	-	99	87.823	Octodon_degus
ENSRNOG00000011785	Xrn2	100	96.425	ENSODEG00000010745	-	100	96.425	Octodon_degus
ENSRNOG00000011785	Xrn2	100	71.959	ENSONIG00000018720	xrn2	100	72.239	Oreochromis_niloticus
ENSRNOG00000011785	Xrn2	100	90.346	ENSOANG00000015673	XRN2	100	90.346	Ornithorhynchus_anatinus
ENSRNOG00000011785	Xrn2	100	96.951	ENSOCUG00000013468	XRN2	100	96.951	Oryctolagus_cuniculus
ENSRNOG00000011785	Xrn2	98	70.954	ENSORLG00000017213	xrn2	97	75.635	Oryzias_latipes
ENSRNOG00000011785	Xrn2	98	70.954	ENSORLG00020001824	xrn2	100	70.600	Oryzias_latipes_hni
ENSRNOG00000011785	Xrn2	98	70.851	ENSORLG00015019747	xrn2	100	70.498	Oryzias_latipes_hsok
ENSRNOG00000011785	Xrn2	90	75.058	ENSOMEG00000019820	xrn2	100	69.340	Oryzias_melastigma
ENSRNOG00000011785	Xrn2	100	95.798	ENSOGAG00000001068	XRN2	100	95.588	Otolemur_garnettii
ENSRNOG00000011785	Xrn2	97	94.283	ENSOARG00000004443	XRN2	100	94.283	Ovis_aries
ENSRNOG00000011785	Xrn2	100	96.951	ENSPPAG00000033549	XRN2	100	96.951	Pan_paniscus
ENSRNOG00000011785	Xrn2	100	96.215	ENSPPRG00000008732	XRN2	100	96.215	Panthera_pardus
ENSRNOG00000011785	Xrn2	97	96.112	ENSPTIG00000015683	XRN2	97	96.112	Panthera_tigris_altaica
ENSRNOG00000011785	Xrn2	100	96.951	ENSPTRG00000013308	XRN2	100	96.951	Pan_troglodytes
ENSRNOG00000011785	Xrn2	100	96.845	ENSPANG00000018088	XRN2	100	96.845	Papio_anubis
ENSRNOG00000011785	Xrn2	100	71.677	ENSPKIG00000016889	xrn2	100	71.546	Paramormyrops_kingsleyae
ENSRNOG00000011785	Xrn2	80	87.109	ENSPSIG00000014666	XRN2	100	86.458	Pelodiscus_sinensis
ENSRNOG00000011785	Xrn2	100	96.845	ENSPEMG00000000111	Xrn2	100	96.845	Peromyscus_maniculatus_bairdii
ENSRNOG00000011785	Xrn2	100	70.613	ENSPFOG00000004182	xrn2	99	71.132	Poecilia_formosa
ENSRNOG00000011785	Xrn2	89	75.465	ENSPLAG00000007351	xrn2	96	75.465	Poecilia_latipinna
ENSRNOG00000011785	Xrn2	94	69.290	ENSPMEG00000011798	xrn2	99	69.750	Poecilia_mexicana
ENSRNOG00000011785	Xrn2	89	75.465	ENSPREG00000012452	xrn2	96	75.465	Poecilia_reticulata
ENSRNOG00000011785	Xrn2	100	96.425	ENSPPYG00000010755	XRN2	100	96.425	Pongo_abelii
ENSRNOG00000011785	Xrn2	100	89.822	ENSPCAG00000011191	XRN2	100	89.822	Procavia_capensis
ENSRNOG00000011785	Xrn2	100	88.854	ENSPCOG00000016468	XRN2	100	88.854	Propithecus_coquereli
ENSRNOG00000011785	Xrn2	93	93.636	ENSPVAG00000004596	XRN2	93	93.636	Pteropus_vampyrus
ENSRNOG00000011785	Xrn2	90	74.596	ENSPNYG00000001765	xrn2	97	74.596	Pundamilia_nyererei
ENSRNOG00000011785	Xrn2	100	71.865	ENSPNAG00000010956	xrn2	99	71.764	Pygocentrus_nattereri
ENSRNOG00000011785	Xrn2	86	97.311	ENSRBIG00000036193	XRN2	100	97.311	Rhinopithecus_bieti
ENSRNOG00000011785	Xrn2	100	96.845	ENSRROG00000044400	XRN2	90	96.845	Rhinopithecus_roxellana
ENSRNOG00000011785	Xrn2	64	56.111	YOR048C	RAT1	63	53.846	Saccharomyces_cerevisiae
ENSRNOG00000011785	Xrn2	100	96.320	ENSSBOG00000021014	XRN2	100	96.320	Saimiri_boliviensis_boliviensis
ENSRNOG00000011785	Xrn2	100	72.680	ENSSFOG00015001091	xrn2	100	72.680	Scleropages_formosus
ENSRNOG00000011785	Xrn2	92	73.476	ENSSMAG00000007834	xrn2	100	69.028	Scophthalmus_maximus
ENSRNOG00000011785	Xrn2	91	72.964	ENSSDUG00000012802	xrn2	99	73.303	Seriola_dumerili
ENSRNOG00000011785	Xrn2	93	74.944	ENSSLDG00000021273	xrn2	100	74.831	Seriola_lalandi_dorsalis
ENSRNOG00000011785	Xrn2	76	100.000	ENSSARG00000005859	-	76	100.000	Sorex_araneus
ENSRNOG00000011785	Xrn2	98	79.274	ENSSPUG00000005485	XRN2	96	78.739	Sphenodon_punctatus
ENSRNOG00000011785	Xrn2	100	70.948	ENSSPAG00000016027	xrn2	99	71.034	Stegastes_partitus
ENSRNOG00000011785	Xrn2	100	94.532	ENSSSCG00000007109	XRN2	100	94.532	Sus_scrofa
ENSRNOG00000011785	Xrn2	100	81.315	ENSTGUG00000007535	XRN2	100	81.211	Taeniopygia_guttata
ENSRNOG00000011785	Xrn2	100	68.384	ENSTRUG00000015489	xrn2	100	68.763	Takifugu_rubripes
ENSRNOG00000011785	Xrn2	100	71.859	ENSTNIG00000010712	xrn2	100	71.859	Tetraodon_nigroviridis
ENSRNOG00000011785	Xrn2	100	96.004	ENSTBEG00000004119	XRN2	100	96.004	Tupaia_belangeri
ENSRNOG00000011785	Xrn2	93	96.577	ENSTTRG00000009087	XRN2	93	96.577	Tursiops_truncatus
ENSRNOG00000011785	Xrn2	100	96.530	ENSUAMG00000024634	XRN2	100	96.530	Ursus_americanus
ENSRNOG00000011785	Xrn2	97	96.220	ENSUMAG00000004012	XRN2	95	96.220	Ursus_maritimus
ENSRNOG00000011785	Xrn2	89	88.416	ENSVPAG00000010694	XRN2	91	88.416	Vicugna_pacos
ENSRNOG00000011785	Xrn2	100	96.320	ENSVVUG00000012178	XRN2	100	96.320	Vulpes_vulpes
ENSRNOG00000011785	Xrn2	100	74.224	ENSXETG00000023501	xrn2	100	74.845	Xenopus_tropicalis
ENSRNOG00000011785	Xrn2	100	69.097	ENSXMAG00000000242	xrn2	92	79.319	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0000738	DNA catabolic process, exonucleolytic	-	IEA	Process
GO:0000738	DNA catabolic process, exonucleolytic	-	ISO	Process
GO:0001147	transcription termination site sequence-specific DNA binding	-	IEA	Function
GO:0001147	transcription termination site sequence-specific DNA binding	-	ISO	Function
GO:0003674	molecular_function	-	ND	Function
GO:0004534	5'-3' exoribonuclease activity	-	IEA	Function
GO:0005634	nucleus	23933240.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	IEA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0007283	spermatogenesis	-	IEA	Process
GO:0007283	spermatogenesis	-	ISO	Process
GO:0008409	5'-3' exonuclease activity	-	ISO	Function
GO:0016070	RNA metabolic process	-	ISO	Process
GO:0016235	aggresome	-	IEA	Component
GO:0016235	aggresome	-	ISO	Component
GO:0021766	hippocampus development	23933240.	IEP	Process
GO:0030182	neuron differentiation	23933240.	IEP	Process
GO:0060041	retina development in camera-type eye	23700402.	IEP	Process
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process