EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000011931 (Gene tree)
Gene ID: 361745
Gene Symbol: Smarca2
Alias: -
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a%2C member 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 166886 bases
Position: chr1:244615821-244782706
Accession: 1302988
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000069210	ResIII	PF04851.15	1.9e-08	1	1
ENSRNOP00000016740	ResIII	PF04851.15	2.2e-08	1	1
ENSRNOP00000069210	BRK	PF07533.16	2.4e-17	1	1
ENSRNOP00000016740	BRK	PF07533.16	2.6e-17	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000016740	-	4794	XM_006231227	ENSRNOP00000016740	1597 (aa)	XP_006231289	E9PTG1
ENSRNOT00000080124	-	4816	-	ENSRNOP00000069210	1488 (aa)	-	A0A0G2JUS4

Gene Model

Click here to download ENSRNOG00000011931's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04714	Thermogenesis	KEGG
rno05225	Hepatocellular carcinoma	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000011931's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000011931	Smarca2	100	96.681	ENSG00000080503	SMARCA2	99	99.441	Homo_sapiens
ENSRNOG00000011931	Smarca2	100	78.938	ENSAPOG00000002641	SMARCA2	97	79.288	Acanthochromis_polyacanthus
ENSRNOG00000011931	Smarca2	95	88.371	ENSAMEG00000012325	SMARCA2	100	98.748	Ailuropoda_melanoleuca
ENSRNOG00000011931	Smarca2	100	78.272	ENSACIG00000015607	SMARCA2	97	78.671	Amphilophus_citrinellus
ENSRNOG00000011931	Smarca2	100	78.392	ENSAOCG00000009647	-	97	79.543	Amphiprion_ocellaris
ENSRNOG00000011931	Smarca2	100	78.999	ENSAPEG00000007646	SMARCA2	97	79.352	Amphiprion_percula
ENSRNOG00000011931	Smarca2	99	79.725	ENSATEG00000006916	SMARCA2	81	84.897	Anabas_testudineus
ENSRNOG00000011931	Smarca2	98	87.114	ENSAPLG00000013873	SMARCA2	98	87.238	Anas_platyrhynchos
ENSRNOG00000011931	Smarca2	100	88.298	ENSACAG00000002423	SMARCA2	84	91.416	Anolis_carolinensis
ENSRNOG00000011931	Smarca2	100	96.306	ENSANAG00000026498	SMARCA2	100	96.306	Aotus_nancymaae
ENSRNOG00000011931	Smarca2	100	79.353	ENSACLG00000004248	SMARCA2	97	79.974	Astatotilapia_calliptera
ENSRNOG00000011931	Smarca2	100	80.308	ENSAMXG00000012404	smarca2	97	80.791	Astyanax_mexicanus
ENSRNOG00000011931	Smarca2	100	94.427	ENSBTAG00000007494	SMARCA2	100	94.427	Bos_taurus
ENSRNOG00000011931	Smarca2	100	95.178	ENSCJAG00000010710	SMARCA2	99	96.252	Callithrix_jacchus
ENSRNOG00000011931	Smarca2	100	95.742	ENSCAFG00000002013	SMARCA2	100	95.742	Canis_familiaris
ENSRNOG00000011931	Smarca2	77	93.036	ENSCAFG00020026802	SMARCA2	98	93.036	Canis_lupus_dingo
ENSRNOG00000011931	Smarca2	100	95.366	ENSCHIG00000025863	SMARCA2	100	95.366	Capra_hircus
ENSRNOG00000011931	Smarca2	100	96.389	ENSTSYG00000003858	SMARCA2	100	96.389	Carlito_syrichta
ENSRNOG00000011931	Smarca2	99	92.182	ENSCAPG00000002890	SMARCA2	100	91.992	Cavia_aperea
ENSRNOG00000011931	Smarca2	100	94.803	ENSCPOG00000005475	SMARCA2	100	94.803	Cavia_porcellus
ENSRNOG00000011931	Smarca2	100	96.306	ENSCCAG00000030636	SMARCA2	100	96.306	Cebus_capucinus
ENSRNOG00000011931	Smarca2	100	95.617	ENSCATG00000031470	SMARCA2	100	95.617	Cercocebus_atys
ENSRNOG00000011931	Smarca2	100	95.241	ENSCLAG00000014484	SMARCA2	100	95.241	Chinchilla_lanigera
ENSRNOG00000011931	Smarca2	94	96.017	ENSCSAG00000008650	SMARCA2	99	94.983	Chlorocebus_sabaeus
ENSRNOG00000011931	Smarca2	87	90.286	ENSCHOG00000004316	SMARCA2	87	90.286	Choloepus_hoffmanni
ENSRNOG00000011931	Smarca2	100	89.174	ENSCPBG00000025463	SMARCA2	100	93.675	Chrysemys_picta_bellii
ENSRNOG00000011931	Smarca2	100	96.431	ENSCANG00000039597	SMARCA2	100	96.431	Colobus_angolensis_palliatus
ENSRNOG00000011931	Smarca2	100	90.357	ENSCGRG00001002323	Smarca2	100	90.426	Cricetulus_griseus_chok1gshd
ENSRNOG00000011931	Smarca2	99	76.053	ENSCSEG00000019311	SMARCA2	97	76.647	Cynoglossus_semilaevis
ENSRNOG00000011931	Smarca2	90	79.021	ENSCVAG00000016571	SMARCA2	77	84.952	Cyprinodon_variegatus
ENSRNOG00000011931	Smarca2	100	80.409	ENSDARG00000008904	smarca2	97	80.612	Danio_rerio
ENSRNOG00000011931	Smarca2	100	93.313	ENSDNOG00000006402	SMARCA2	100	93.313	Dasypus_novemcinctus
ENSRNOG00000011931	Smarca2	100	96.619	ENSDORG00000014832	Smarca2	100	96.619	Dipodomys_ordii
ENSRNOG00000011931	Smarca2	79	58.289	FBgn0000212	brm	71	61.678	Drosophila_melanogaster
ENSRNOG00000011931	Smarca2	93	71.307	ENSEBUG00000011442	-	81	74.148	Eptatretus_burgeri
ENSRNOG00000011931	Smarca2	87	61.290	ENSEBUG00000002449	-	93	63.717	Eptatretus_burgeri
ENSRNOG00000011931	Smarca2	100	94.678	ENSEASG00005010312	SMARCA2	100	94.678	Equus_asinus_asinus
ENSRNOG00000011931	Smarca2	62	97.222	ENSEEUG00000015540	-	73	86.047	Erinaceus_europaeus
ENSRNOG00000011931	Smarca2	92	79.741	ENSELUG00000010318	smarca2	96	77.839	Esox_lucius
ENSRNOG00000011931	Smarca2	100	95.053	ENSFCAG00000001568	SMARCA2	100	95.053	Felis_catus
ENSRNOG00000011931	Smarca2	100	89.484	ENSFALG00000010416	SMARCA2	90	94.352	Ficedula_albicollis
ENSRNOG00000011931	Smarca2	99	95.229	ENSFDAG00000010502	SMARCA2	99	95.334	Fukomys_damarensis
ENSRNOG00000011931	Smarca2	100	79.287	ENSFHEG00000021250	SMARCA2	97	79.710	Fundulus_heteroclitus
ENSRNOG00000011931	Smarca2	98	76.718	ENSGMOG00000014229	SMARCA2	83	82.020	Gadus_morhua
ENSRNOG00000011931	Smarca2	100	90.238	ENSGALG00000010164	SMARCA2	100	89.925	Gallus_gallus
ENSRNOG00000011931	Smarca2	95	75.278	ENSGAFG00000001164	SMARCA2	93	75.554	Gambusia_affinis
ENSRNOG00000011931	Smarca2	99	77.646	ENSGACG00000014488	SMARCA2	97	78.041	Gasterosteus_aculeatus
ENSRNOG00000011931	Smarca2	100	89.250	ENSGAGG00000024412	SMARCA2	83	93.675	Gopherus_agassizii
ENSRNOG00000011931	Smarca2	78	98.953	ENSGGOG00000000513	SMARCA2	100	96.804	Gorilla_gorilla
ENSRNOG00000011931	Smarca2	100	78.633	ENSHBUG00000006691	SMARCA2	96	79.936	Haplochromis_burtoni
ENSRNOG00000011931	Smarca2	99	96.030	ENSHGLG00000005215	SMARCA2	99	96.030	Heterocephalus_glaber_female
ENSRNOG00000011931	Smarca2	100	95.116	ENSHGLG00100010496	SMARCA2	100	95.116	Heterocephalus_glaber_male
ENSRNOG00000011931	Smarca2	82	86.238	ENSHCOG00000015348	-	74	86.436	Hippocampus_comes
ENSRNOG00000011931	Smarca2	100	79.348	ENSIPUG00000011060	smarca2	97	79.235	Ictalurus_punctatus
ENSRNOG00000011931	Smarca2	100	96.869	ENSSTOG00000006812	SMARCA2	100	96.869	Ictidomys_tridecemlineatus
ENSRNOG00000011931	Smarca2	99	96.784	ENSJJAG00000010867	Smarca2	99	96.784	Jaculus_jaculus
ENSRNOG00000011931	Smarca2	100	78.712	ENSKMAG00000015844	-	98	79.156	Kryptolebias_marmoratus
ENSRNOG00000011931	Smarca2	52	71.805	ENSLACG00000000270	SMARCA2	83	86.164	Latimeria_chalumnae
ENSRNOG00000011931	Smarca2	98	82.919	ENSLOCG00000011499	smarca2	83	87.623	Lepisosteus_oculatus
ENSRNOG00000011931	Smarca2	100	92.523	ENSLAFG00000014061	SMARCA2	83	95.420	Loxodonta_africana
ENSRNOG00000011931	Smarca2	100	95.244	ENSMFAG00000003814	SMARCA2	100	95.244	Macaca_fascicularis
ENSRNOG00000011931	Smarca2	100	96.370	ENSMMUG00000015279	SMARCA2	100	96.370	Macaca_mulatta
ENSRNOG00000011931	Smarca2	100	95.247	ENSMNEG00000041069	SMARCA2	100	95.875	Macaca_nemestrina
ENSRNOG00000011931	Smarca2	100	94.114	ENSMLEG00000027418	SMARCA2	100	94.177	Mandrillus_leucophaeus
ENSRNOG00000011931	Smarca2	100	80.000	ENSMAMG00000003056	SMARCA2	97	81.409	Mastacembelus_armatus
ENSRNOG00000011931	Smarca2	100	79.123	ENSMZEG00005020709	SMARCA2	97	79.784	Maylandia_zebra
ENSRNOG00000011931	Smarca2	81	77.689	ENSMGAG00000005160	-	100	76.361	Meleagris_gallopavo
ENSRNOG00000011931	Smarca2	100	95.930	ENSMICG00000005162	SMARCA2	100	95.930	Microcebus_murinus
ENSRNOG00000011931	Smarca2	100	97.999	ENSMOCG00000001611	Smarca2	100	97.999	Microtus_ochrogaster
ENSRNOG00000011931	Smarca2	99	76.991	ENSMMOG00000014196	SMARCA2	97	77.956	Mola_mola
ENSRNOG00000011931	Smarca2	100	89.932	ENSMODG00000003578	SMARCA2	100	90.239	Monodelphis_domestica
ENSRNOG00000011931	Smarca2	99	79.469	ENSMALG00000009611	SMARCA2	97	79.614	Monopterus_albus
ENSRNOG00000011931	Smarca2	100	98.316	MGP_CAROLIEiJ_G0022841	Smarca2	100	98.369	Mus_caroli
ENSRNOG00000011931	Smarca2	100	98.315	ENSMUSG00000024921	Smarca2	99	99.441	Mus_musculus
ENSRNOG00000011931	Smarca2	100	98.686	MGP_PahariEiJ_G0014334	Smarca2	100	98.686	Mus_pahari
ENSRNOG00000011931	Smarca2	100	98.253	MGP_SPRETEiJ_G0023759	Smarca2	100	98.253	Mus_spretus
ENSRNOG00000011931	Smarca2	80	98.751	ENSMPUG00000005171	SMARCA2	94	98.751	Mustela_putorius_furo
ENSRNOG00000011931	Smarca2	99	89.130	ENSMLUG00000002342	SMARCA2	82	91.598	Myotis_lucifugus
ENSRNOG00000011931	Smarca2	99	95.551	ENSNGAG00000000108	Smarca2	99	95.551	Nannospalax_galili
ENSRNOG00000011931	Smarca2	95	66.905	ENSNBRG00000017998	SMARCA2	94	83.085	Neolamprologus_brichardi
ENSRNOG00000011931	Smarca2	100	94.177	ENSNLEG00000008575	SMARCA2	100	94.177	Nomascus_leucogenys
ENSRNOG00000011931	Smarca2	100	84.220	ENSMEUG00000009812	SMARCA2	100	84.596	Notamacropus_eugenii
ENSRNOG00000011931	Smarca2	100	89.925	ENSOPRG00000013474	SMARCA2	100	89.925	Ochotona_princeps
ENSRNOG00000011931	Smarca2	99	94.922	ENSODEG00000005452	SMARCA2	99	96.229	Octodon_degus
ENSRNOG00000011931	Smarca2	99	79.304	ENSONIG00000014163	SMARCA2	97	80.076	Oreochromis_niloticus
ENSRNOG00000011931	Smarca2	52	94.352	ENSOANG00000008299	-	95	98.113	Ornithorhynchus_anatinus
ENSRNOG00000011931	Smarca2	100	94.825	ENSOCUG00000006320	SMARCA2	100	94.825	Oryctolagus_cuniculus
ENSRNOG00000011931	Smarca2	100	78.726	ENSORLG00000020820	SMARCA2	97	78.997	Oryzias_latipes
ENSRNOG00000011931	Smarca2	100	78.726	ENSORLG00015006289	SMARCA2	94	91.436	Oryzias_latipes_hsok
ENSRNOG00000011931	Smarca2	99	79.571	ENSOMEG00000009736	-	97	79.132	Oryzias_melastigma
ENSRNOG00000011931	Smarca2	99	91.082	ENSOGAG00000017053	SMARCA2	99	91.574	Otolemur_garnettii
ENSRNOG00000011931	Smarca2	100	93.116	ENSOARG00000013265	SMARCA2	100	93.116	Ovis_aries
ENSRNOG00000011931	Smarca2	100	92.674	ENSPPAG00000038717	SMARCA2	100	93.637	Pan_paniscus
ENSRNOG00000011931	Smarca2	100	95.116	ENSPPRG00000001879	SMARCA2	100	95.116	Panthera_pardus
ENSRNOG00000011931	Smarca2	100	94.991	ENSPTRG00000051168	SMARCA2	100	94.803	Pan_troglodytes
ENSRNOG00000011931	Smarca2	100	89.631	ENSPANG00000025121	SMARCA2	100	89.569	Papio_anubis
ENSRNOG00000011931	Smarca2	100	81.238	ENSPKIG00000018469	-	97	80.680	Paramormyrops_kingsleyae
ENSRNOG00000011931	Smarca2	100	89.118	ENSPSIG00000006284	SMARCA2	100	89.431	Pelodiscus_sinensis
ENSRNOG00000011931	Smarca2	98	72.842	ENSPMGG00000013696	-	97	73.507	Periophthalmus_magnuspinnatus
ENSRNOG00000011931	Smarca2	100	97.685	ENSPEMG00000019821	Smarca2	100	97.685	Peromyscus_maniculatus_bairdii
ENSRNOG00000011931	Smarca2	94	71.883	ENSPMAG00000005337	-	80	75.883	Petromyzon_marinus
ENSRNOG00000011931	Smarca2	100	91.296	ENSPCIG00000015658	SMARCA2	100	91.609	Phascolarctos_cinereus
ENSRNOG00000011931	Smarca2	100	78.827	ENSPFOG00000001856	SMARCA2	97	78.861	Poecilia_formosa
ENSRNOG00000011931	Smarca2	99	78.745	ENSPLAG00000017829	SMARCA2	82	81.118	Poecilia_latipinna
ENSRNOG00000011931	Smarca2	99	78.794	ENSPMEG00000001815	-	97	76.160	Poecilia_mexicana
ENSRNOG00000011931	Smarca2	100	78.493	ENSPREG00000013800	SMARCA2	96	77.123	Poecilia_reticulata
ENSRNOG00000011931	Smarca2	100	94.928	ENSPPYG00000019258	SMARCA2	100	95.053	Pongo_abelii
ENSRNOG00000011931	Smarca2	76	83.222	ENSPCAG00000016969	SMARCA2	78	83.544	Procavia_capensis
ENSRNOG00000011931	Smarca2	100	93.742	ENSPCOG00000025709	SMARCA2	100	94.055	Propithecus_coquereli
ENSRNOG00000011931	Smarca2	91	97.368	ENSPVAG00000000901	SMARCA2	95	97.368	Pteropus_vampyrus
ENSRNOG00000011931	Smarca2	100	75.649	ENSPNYG00000004533	SMARCA2	97	75.825	Pundamilia_nyererei
ENSRNOG00000011931	Smarca2	99	81.710	ENSPNAG00000014635	smarca2	81	86.712	Pygocentrus_nattereri
ENSRNOG00000011931	Smarca2	100	94.364	ENSRBIG00000038618	SMARCA2	100	94.114	Rhinopithecus_bieti
ENSRNOG00000011931	Smarca2	100	95.429	ENSRROG00000019271	SMARCA2	100	95.429	Rhinopithecus_roxellana
ENSRNOG00000011931	Smarca2	80	98.833	ENSSBOG00000034827	SMARCA2	100	93.250	Saimiri_boliviensis_boliviensis
ENSRNOG00000011931	Smarca2	100	90.476	ENSSHAG00000007884	SMARCA2	100	89.687	Sarcophilus_harrisii
ENSRNOG00000011931	Smarca2	97	83.703	ENSSFOG00015014870	SMARCA2	97	83.738	Scleropages_formosus
ENSRNOG00000011931	Smarca2	100	78.571	ENSSMAG00000013707	SMARCA2	97	79.291	Scophthalmus_maximus
ENSRNOG00000011931	Smarca2	99	78.759	ENSSDUG00000008852	-	96	79.821	Seriola_dumerili
ENSRNOG00000011931	Smarca2	99	79.122	ENSSLDG00000025449	SMARCA2	96	79.553	Seriola_lalandi_dorsalis
ENSRNOG00000011931	Smarca2	95	96.842	ENSSARG00000007888	SMARCA2	95	96.842	Sorex_araneus
ENSRNOG00000011931	Smarca2	95	85.209	ENSSPUG00000001629	SMARCA2	86	89.130	Sphenodon_punctatus
ENSRNOG00000011931	Smarca2	100	78.928	ENSSPAG00000020091	-	97	79.264	Stegastes_partitus
ENSRNOG00000011931	Smarca2	100	95.304	ENSSSCG00000005232	SMARCA2	100	95.304	Sus_scrofa
ENSRNOG00000011931	Smarca2	98	89.286	ENSTGUG00000005460	SMARCA2	83	93.825	Taeniopygia_guttata
ENSRNOG00000011931	Smarca2	99	79.010	ENSTRUG00000015619	SMARCA2	97	78.961	Takifugu_rubripes
ENSRNOG00000011931	Smarca2	69	99.297	ENSTBEG00000008767	SMARCA2	74	99.297	Tupaia_belangeri
ENSRNOG00000011931	Smarca2	95	94.389	ENSTTRG00000002033	SMARCA2	95	94.719	Tursiops_truncatus
ENSRNOG00000011931	Smarca2	95	92.984	ENSUAMG00000024701	SMARCA2	99	93.106	Ursus_americanus
ENSRNOG00000011931	Smarca2	92	86.808	ENSVPAG00000001204	SMARCA2	100	86.808	Vicugna_pacos
ENSRNOG00000011931	Smarca2	76	94.002	ENSVVUG00000004598	SMARCA2	99	94.002	Vulpes_vulpes
ENSRNOG00000011931	Smarca2	100	82.187	ENSXETG00000015299	smarca2	82	86.055	Xenopus_tropicalis
ENSRNOG00000011931	Smarca2	94	78.877	ENSXCOG00000011073	SMARCA2	97	79.595	Xiphophorus_couchianus
ENSRNOG00000011931	Smarca2	100	77.900	ENSXMAG00000015611	SMARCA2	95	78.225	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000790	nuclear chromatin	-	ISO	Component
GO:0003682	chromatin binding	15574597.16452305.	IDA	Function
GO:0003713	transcription coactivator activity	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0007286	spermatid development	22215678.	IEP	Process
GO:0008285	negative regulation of cell proliferation	-	IEA	Process
GO:0008285	negative regulation of cell proliferation	-	ISO	Process
GO:0016514	SWI/SNF complex	-	IEA	Component
GO:0016514	SWI/SNF complex	-	ISO	Component
GO:0016887	ATPase activity	-	IEA	Function
GO:0030308	negative regulation of cell growth	-	IEA	Process
GO:0030308	negative regulation of cell growth	-	ISO	Process
GO:0035887	aortic smooth muscle cell differentiation	-	ISO	Process
GO:0042393	histone binding	-	IEA	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0044212	transcription regulatory region DNA binding	-	IEA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045111	intermediate filament cytoskeleton	-	IEA	Component
GO:0045111	intermediate filament cytoskeleton	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	-	IEA	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0071564	npBAF complex	-	ISO	Component
GO:0071565	nBAF complex	-	ISO	Component