EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012157 (Gene tree)
Gene ID: 296126
Gene Symbol: Snrnp200
Alias: Ascc3l1|LOC296126|MGC116386|U5-200KD
Full Name: small nuclear ribonucleoprotein U5 subunit 200
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 29342 bases
Position: chr3:119640298-119669639
Accession: 1561120
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000048598	ResIII	PF04851.15	1.7e-25	1	2
ENSRNOP00000048598	ResIII	PF04851.15	1.7e-25	2	2
ENSRNOP00000048598	DEAD	PF00270.29	2.3e-52	1	2
ENSRNOP00000048598	DEAD	PF00270.29	2.3e-52	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000043895	-	6803	-	ENSRNOP00000048598	2136 (aa)	-	M3ZCQ2

Gene Model

Click here to download ENSRNOG00000012157's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012157's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012157	Snrnp200	74	32.357	ENSRNOG00000023299	Hfm1	58	32.633
ENSRNOG00000012157	Snrnp200	86	42.189	ENSRNOG00000037604	Ascc3	81	44.344

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012157	Snrnp200	100	99.813	ENSG00000144028	SNRNP200	100	99.813	Homo_sapiens
ENSRNOG00000012157	Snrnp200	99	90.935	ENSAPOG00000010223	snrnp200	99	90.824	Acanthochromis_polyacanthus
ENSRNOG00000012157	Snrnp200	100	99.766	ENSAMEG00000008996	SNRNP200	100	99.766	Ailuropoda_melanoleuca
ENSRNOG00000012157	Snrnp200	97	90.310	ENSACIG00000001764	snrnp200	98	90.310	Amphilophus_citrinellus
ENSRNOG00000012157	Snrnp200	99	90.841	ENSAOCG00000024593	snrnp200	100	90.096	Amphiprion_ocellaris
ENSRNOG00000012157	Snrnp200	97	90.150	ENSAPEG00000012554	snrnp200	100	90.150	Amphiprion_percula
ENSRNOG00000012157	Snrnp200	99	90.700	ENSATEG00000022522	snrnp200	99	90.590	Anabas_testudineus
ENSRNOG00000012157	Snrnp200	99	97.643	ENSAPLG00000004313	SNRNP200	100	97.643	Anas_platyrhynchos
ENSRNOG00000012157	Snrnp200	99	97.439	ENSACAG00000000434	SNRNP200	100	97.439	Anolis_carolinensis
ENSRNOG00000012157	Snrnp200	100	95.200	ENSANAG00000036625	SNRNP200	100	95.709	Aotus_nancymaae
ENSRNOG00000012157	Snrnp200	99	90.559	ENSACLG00000011188	snrnp200	99	90.449	Astatotilapia_calliptera
ENSRNOG00000012157	Snrnp200	99	90.653	ENSAMXG00000005684	snrnp200	99	90.543	Astyanax_mexicanus
ENSRNOG00000012157	Snrnp200	100	99.204	ENSBTAG00000000848	SNRNP200	100	99.204	Bos_taurus
ENSRNOG00000012157	Snrnp200	100	99.766	ENSCJAG00000007514	SNRNP200	100	99.766	Callithrix_jacchus
ENSRNOG00000012157	Snrnp200	100	98.973	ENSCAFG00020019979	SNRNP200	100	99.825	Canis_lupus_dingo
ENSRNOG00000012157	Snrnp200	100	99.391	ENSCHIG00000020611	SNRNP200	100	99.391	Capra_hircus
ENSRNOG00000012157	Snrnp200	100	99.813	ENSTSYG00000010467	SNRNP200	100	99.813	Carlito_syrichta
ENSRNOG00000012157	Snrnp200	99	99.342	ENSCAPG00000017234	SNRNP200	99	99.342	Cavia_aperea
ENSRNOG00000012157	Snrnp200	100	99.625	ENSCPOG00000006776	SNRNP200	100	99.625	Cavia_porcellus
ENSRNOG00000012157	Snrnp200	100	99.766	ENSCCAG00000033962	SNRNP200	100	99.766	Cebus_capucinus
ENSRNOG00000012157	Snrnp200	100	99.813	ENSCATG00000015790	SNRNP200	100	99.813	Cercocebus_atys
ENSRNOG00000012157	Snrnp200	100	99.485	ENSCLAG00000004116	SNRNP200	100	99.485	Chinchilla_lanigera
ENSRNOG00000012157	Snrnp200	100	99.766	ENSCSAG00000017369	SNRNP200	100	99.766	Chlorocebus_sabaeus
ENSRNOG00000012157	Snrnp200	75	99.213	ENSCHOG00000012981	-	59	99.213	Choloepus_hoffmanni
ENSRNOG00000012157	Snrnp200	100	97.662	ENSCPBG00000022571	SNRNP200	100	97.662	Chrysemys_picta_bellii
ENSRNOG00000012157	Snrnp200	99	76.553	ENSCING00000005082	-	99	76.693	Ciona_intestinalis
ENSRNOG00000012157	Snrnp200	100	94.302	ENSCANG00000033932	SNRNP200	100	99.751	Colobus_angolensis_palliatus
ENSRNOG00000012157	Snrnp200	100	99.953	ENSCGRG00001022610	Snrnp200	100	99.953	Cricetulus_griseus_chok1gshd
ENSRNOG00000012157	Snrnp200	100	99.392	ENSCGRG00000016472	Snrnp200	100	99.392	Cricetulus_griseus_crigri
ENSRNOG00000012157	Snrnp200	100	89.934	ENSCSEG00000016399	snrnp200	100	89.934	Cynoglossus_semilaevis
ENSRNOG00000012157	Snrnp200	100	85.674	ENSCVAG00000017631	snrnp200	99	85.674	Cyprinodon_variegatus
ENSRNOG00000012157	Snrnp200	100	90.403	ENSDARG00000077536	snrnp200	99	90.403	Danio_rerio
ENSRNOG00000012157	Snrnp200	100	98.174	ENSDNOG00000011227	SNRNP200	100	98.174	Dasypus_novemcinctus
ENSRNOG00000012157	Snrnp200	100	97.195	ENSDORG00000005861	Snrnp200	100	97.195	Dipodomys_ordii
ENSRNOG00000012157	Snrnp200	100	74.209	FBgn0263599	l(3)72Ab	99	74.115	Drosophila_melanogaster
ENSRNOG00000012157	Snrnp200	95	99.569	ENSETEG00000000162	SNRNP200	74	99.569	Echinops_telfairi
ENSRNOG00000012157	Snrnp200	83	81.256	ENSEBUG00000016524	snrnp200	95	81.256	Eptatretus_burgeri
ENSRNOG00000012157	Snrnp200	100	98.648	ENSEASG00005001884	SNRNP200	100	98.648	Equus_asinus_asinus
ENSRNOG00000012157	Snrnp200	100	99.766	ENSECAG00000019675	SNRNP200	100	99.766	Equus_caballus
ENSRNOG00000012157	Snrnp200	88	100.000	ENSEEUG00000012178	SNRNP200	93	100.000	Erinaceus_europaeus
ENSRNOG00000012157	Snrnp200	99	90.888	ENSELUG00000018948	snrnp200	99	90.777	Esox_lucius
ENSRNOG00000012157	Snrnp200	100	99.813	ENSFCAG00000010699	SNRNP200	100	99.813	Felis_catus
ENSRNOG00000012157	Snrnp200	95	89.942	ENSFALG00000001368	-	95	92.857	Ficedula_albicollis
ENSRNOG00000012157	Snrnp200	100	99.532	ENSFDAG00000004683	SNRNP200	100	99.532	Fukomys_damarensis
ENSRNOG00000012157	Snrnp200	100	87.828	ENSFHEG00000003786	snrnp200	99	87.828	Fundulus_heteroclitus
ENSRNOG00000012157	Snrnp200	100	89.720	ENSGMOG00000004881	snrnp200	99	89.673	Gadus_morhua
ENSRNOG00000012157	Snrnp200	100	88.062	ENSGAFG00000010807	snrnp200	99	88.062	Gambusia_affinis
ENSRNOG00000012157	Snrnp200	100	90.051	ENSGACG00000011474	snrnp200	99	89.958	Gasterosteus_aculeatus
ENSRNOG00000012157	Snrnp200	95	97.635	ENSGAGG00000016069	SNRNP200	99	97.635	Gopherus_agassizii
ENSRNOG00000012157	Snrnp200	100	99.813	ENSGGOG00000005174	SNRNP200	100	99.813	Gorilla_gorilla
ENSRNOG00000012157	Snrnp200	97	87.834	ENSHBUG00000011322	snrnp200	99	87.880	Haplochromis_burtoni
ENSRNOG00000012157	Snrnp200	100	99.625	ENSHGLG00000006654	SNRNP200	100	99.625	Heterocephalus_glaber_female
ENSRNOG00000012157	Snrnp200	100	99.625	ENSHGLG00100018594	SNRNP200	100	99.625	Heterocephalus_glaber_male
ENSRNOG00000012157	Snrnp200	100	99.766	ENSSTOG00000016351	SNRNP200	100	99.766	Ictidomys_tridecemlineatus
ENSRNOG00000012157	Snrnp200	100	99.672	ENSJJAG00000023659	Snrnp200	100	99.672	Jaculus_jaculus
ENSRNOG00000012157	Snrnp200	100	87.587	ENSKMAG00000003665	snrnp200	99	87.587	Kryptolebias_marmoratus
ENSRNOG00000012157	Snrnp200	100	90.309	ENSLBEG00000021585	snrnp200	99	90.309	Labrus_bergylta
ENSRNOG00000012157	Snrnp200	82	94.722	ENSLACG00000000226	SNRNP200	99	94.722	Latimeria_chalumnae
ENSRNOG00000012157	Snrnp200	100	92.135	ENSLOCG00000015198	snrnp200	99	92.135	Lepisosteus_oculatus
ENSRNOG00000012157	Snrnp200	100	99.391	ENSLAFG00000015626	SNRNP200	100	99.391	Loxodonta_africana
ENSRNOG00000012157	Snrnp200	100	99.766	ENSMFAG00000040174	SNRNP200	100	99.766	Macaca_fascicularis
ENSRNOG00000012157	Snrnp200	100	99.766	ENSMMUG00000023261	SNRNP200	100	99.766	Macaca_mulatta
ENSRNOG00000012157	Snrnp200	100	99.719	ENSMNEG00000032398	SNRNP200	100	99.719	Macaca_nemestrina
ENSRNOG00000012157	Snrnp200	100	99.813	ENSMLEG00000019083	SNRNP200	100	99.813	Mandrillus_leucophaeus
ENSRNOG00000012157	Snrnp200	100	90.267	ENSMAMG00000007851	snrnp200	99	90.220	Mastacembelus_armatus
ENSRNOG00000012157	Snrnp200	97	87.834	ENSMZEG00005010787	snrnp200	99	87.880	Maylandia_zebra
ENSRNOG00000012157	Snrnp200	97	97.194	ENSMGAG00000001831	SNRNP200	100	97.194	Meleagris_gallopavo
ENSRNOG00000012157	Snrnp200	100	100.000	ENSMAUG00000011825	Snrnp200	100	100.000	Mesocricetus_auratus
ENSRNOG00000012157	Snrnp200	100	99.766	ENSMICG00000004710	SNRNP200	100	99.766	Microcebus_murinus
ENSRNOG00000012157	Snrnp200	100	97.425	ENSMOCG00000011814	Snrnp200	100	97.425	Microtus_ochrogaster
ENSRNOG00000012157	Snrnp200	99	89.056	ENSMMOG00000014167	snrnp200	99	88.951	Mola_mola
ENSRNOG00000012157	Snrnp200	100	98.876	ENSMODG00000008475	SNRNP200	100	98.876	Monodelphis_domestica
ENSRNOG00000012157	Snrnp200	99	90.841	ENSMALG00000001973	snrnp200	99	90.730	Monopterus_albus
ENSRNOG00000012157	Snrnp200	100	99.813	MGP_CAROLIEiJ_G0024250	Snrnp200	100	99.813	Mus_caroli
ENSRNOG00000012157	Snrnp200	100	99.860	ENSMUSG00000003660	Snrnp200	100	99.860	Mus_musculus
ENSRNOG00000012157	Snrnp200	100	99.906	MGP_PahariEiJ_G0025695	Snrnp200	100	99.906	Mus_pahari
ENSRNOG00000012157	Snrnp200	100	99.860	MGP_SPRETEiJ_G0025170	Snrnp200	100	100.000	Mus_spretus
ENSRNOG00000012157	Snrnp200	100	99.719	ENSMPUG00000008949	SNRNP200	100	99.719	Mustela_putorius_furo
ENSRNOG00000012157	Snrnp200	100	99.065	ENSMLUG00000010493	SNRNP200	100	99.065	Myotis_lucifugus
ENSRNOG00000012157	Snrnp200	100	95.365	ENSMLUG00000027511	-	100	95.365	Myotis_lucifugus
ENSRNOG00000012157	Snrnp200	100	99.906	ENSNGAG00000021993	Snrnp200	100	99.906	Nannospalax_galili
ENSRNOG00000012157	Snrnp200	90	90.319	ENSNBRG00000017960	snrnp200	98	90.319	Neolamprologus_brichardi
ENSRNOG00000012157	Snrnp200	100	95.165	ENSNLEG00000000025	SNRNP200	100	95.289	Nomascus_leucogenys
ENSRNOG00000012157	Snrnp200	100	100.000	ENSMEUG00000010532	SNRNP200	79	100.000	Notamacropus_eugenii
ENSRNOG00000012157	Snrnp200	100	95.880	ENSOPRG00000015464	SNRNP200	100	95.880	Ochotona_princeps
ENSRNOG00000012157	Snrnp200	100	99.485	ENSODEG00000008366	SNRNP200	100	99.485	Octodon_degus
ENSRNOG00000012157	Snrnp200	99	90.559	ENSONIG00000010714	snrnp200	99	90.449	Oreochromis_niloticus
ENSRNOG00000012157	Snrnp200	100	99.672	ENSOCUG00000009864	SNRNP200	100	99.672	Oryctolagus_cuniculus
ENSRNOG00000012157	Snrnp200	100	90.356	ENSORLG00000012286	snrnp200	100	90.356	Oryzias_latipes
ENSRNOG00000012157	Snrnp200	100	90.403	ENSORLG00020004648	snrnp200	100	90.403	Oryzias_latipes_hni
ENSRNOG00000012157	Snrnp200	100	90.356	ENSORLG00015019114	snrnp200	100	90.356	Oryzias_latipes_hsok
ENSRNOG00000012157	Snrnp200	99	90.606	ENSOMEG00000011834	snrnp200	99	90.496	Oryzias_melastigma
ENSRNOG00000012157	Snrnp200	100	99.813	ENSOGAG00000006879	SNRNP200	100	99.813	Otolemur_garnettii
ENSRNOG00000012157	Snrnp200	100	98.362	ENSOARG00000013949	SNRNP200	100	98.362	Ovis_aries
ENSRNOG00000012157	Snrnp200	100	99.813	ENSPPAG00000041559	SNRNP200	100	99.813	Pan_paniscus
ENSRNOG00000012157	Snrnp200	100	99.813	ENSPPRG00000004435	SNRNP200	100	99.813	Panthera_pardus
ENSRNOG00000012157	Snrnp200	100	99.345	ENSPTIG00000006380	SNRNP200	100	99.345	Panthera_tigris_altaica
ENSRNOG00000012157	Snrnp200	100	99.813	ENSPTRG00000012230	SNRNP200	100	99.813	Pan_troglodytes
ENSRNOG00000012157	Snrnp200	100	99.766	ENSPANG00000006017	SNRNP200	100	99.766	Papio_anubis
ENSRNOG00000012157	Snrnp200	100	91.152	ENSPKIG00000014762	snrnp200	99	91.152	Paramormyrops_kingsleyae
ENSRNOG00000012157	Snrnp200	100	96.631	ENSPSIG00000008580	SNRNP200	100	96.631	Pelodiscus_sinensis
ENSRNOG00000012157	Snrnp200	100	98.876	ENSPCIG00000023050	SNRNP200	100	98.876	Phascolarctos_cinereus
ENSRNOG00000012157	Snrnp200	100	90.407	ENSPFOG00000015110	snrnp200	99	90.407	Poecilia_formosa
ENSRNOG00000012157	Snrnp200	97	90.275	ENSPLAG00000006711	snrnp200	99	90.275	Poecilia_latipinna
ENSRNOG00000012157	Snrnp200	97	90.220	ENSPMEG00000021166	snrnp200	99	90.220	Poecilia_mexicana
ENSRNOG00000012157	Snrnp200	100	90.496	ENSPREG00000008875	snrnp200	99	90.496	Poecilia_reticulata
ENSRNOG00000012157	Snrnp200	100	99.813	ENSPPYG00000012068	SNRNP200	100	99.813	Pongo_abelii
ENSRNOG00000012157	Snrnp200	97	98.718	ENSPCAG00000008536	SNRNP200	89	98.718	Procavia_capensis
ENSRNOG00000012157	Snrnp200	100	99.813	ENSPCOG00000024608	SNRNP200	100	99.813	Propithecus_coquereli
ENSRNOG00000012157	Snrnp200	96	99.660	ENSPVAG00000005860	SNRNP200	93	99.660	Pteropus_vampyrus
ENSRNOG00000012157	Snrnp200	99	86.042	ENSPNYG00000017476	snrnp200	99	85.948	Pundamilia_nyererei
ENSRNOG00000012157	Snrnp200	100	86.142	ENSPNAG00000010998	snrnp200	99	86.142	Pygocentrus_nattereri
ENSRNOG00000012157	Snrnp200	100	99.813	ENSRBIG00000044690	-	100	99.813	Rhinopithecus_bieti
ENSRNOG00000012157	Snrnp200	100	99.813	ENSRROG00000037952	-	100	99.813	Rhinopithecus_roxellana
ENSRNOG00000012157	Snrnp200	100	99.766	ENSSBOG00000035471	SNRNP200	100	99.766	Saimiri_boliviensis_boliviensis
ENSRNOG00000012157	Snrnp200	97	98.791	ENSSHAG00000000758	SNRNP200	100	98.791	Sarcophilus_harrisii
ENSRNOG00000012157	Snrnp200	99	91.733	ENSSFOG00015018826	snrnp200	99	91.620	Scleropages_formosus
ENSRNOG00000012157	Snrnp200	99	90.512	ENSSMAG00000005463	snrnp200	99	90.403	Scophthalmus_maximus
ENSRNOG00000012157	Snrnp200	99	90.794	ENSSDUG00000021410	snrnp200	99	90.684	Seriola_dumerili
ENSRNOG00000012157	Snrnp200	99	90.747	ENSSLDG00000010884	snrnp200	99	90.637	Seriola_lalandi_dorsalis
ENSRNOG00000012157	Snrnp200	95	98.928	ENSSARG00000010728	SNRNP200	96	98.928	Sorex_araneus
ENSRNOG00000012157	Snrnp200	100	97.425	ENSSPUG00000003726	-	100	97.425	Sphenodon_punctatus
ENSRNOG00000012157	Snrnp200	99	90.841	ENSSPAG00000001842	snrnp200	99	90.730	Stegastes_partitus
ENSRNOG00000012157	Snrnp200	100	99.625	ENSSSCG00000008127	SNRNP200	100	99.625	Sus_scrofa
ENSRNOG00000012157	Snrnp200	99	87.914	ENSTGUG00000014475	-	100	87.914	Taeniopygia_guttata
ENSRNOG00000012157	Snrnp200	99	90.465	ENSTRUG00000001307	snrnp200	99	90.356	Takifugu_rubripes
ENSRNOG00000012157	Snrnp200	100	85.925	ENSTNIG00000004320	snrnp200	100	85.925	Tetraodon_nigroviridis
ENSRNOG00000012157	Snrnp200	82	100.000	ENSTBEG00000003329	-	67	100.000	Tupaia_belangeri
ENSRNOG00000012157	Snrnp200	100	99.438	ENSTTRG00000004983	SNRNP200	100	99.438	Tursiops_truncatus
ENSRNOG00000012157	Snrnp200	75	92.926	ENSUAMG00000008395	-	95	92.926	Ursus_americanus
ENSRNOG00000012157	Snrnp200	100	99.813	ENSUMAG00000012385	SNRNP200	100	99.813	Ursus_maritimus
ENSRNOG00000012157	Snrnp200	90	100.000	ENSVPAG00000006434	SNRNP200	69	100.000	Vicugna_pacos
ENSRNOG00000012157	Snrnp200	100	99.580	ENSVVUG00000026247	SNRNP200	100	99.580	Vulpes_vulpes
ENSRNOG00000012157	Snrnp200	100	94.390	ENSXETG00000001243	snrnp200	100	94.390	Xenopus_tropicalis
ENSRNOG00000012157	Snrnp200	97	90.525	ENSXMAG00000002058	snrnp200	98	90.525	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000388	spliceosome conformational change to release U4 (or U4atac) and U1 (or U11)	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	21873635.	IBA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	IEA	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISO	Function
GO:0004004	ATP-dependent RNA helicase activity	-	ISS	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005681	spliceosomal complex	21873635.	IBA	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005682	U5 snRNP	21873635.	IBA	Component
GO:0005682	U5 snRNP	-	IEA	Component
GO:0005682	U5 snRNP	-	ISO	Component
GO:0008026	ATP-dependent helicase activity	21873635.	IBA	Function
GO:0008026	ATP-dependent helicase activity	-	ISO	Function
GO:0008150	biological_process	-	ND	Process
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	IEA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component
GO:0071014	post-mRNA release spliceosomal complex	21873635.	IBA	Component