EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000012264 (Gene tree)
Gene ID
362766
Gene Symbol
Alkbh1
Alias
Alkbh|LOC362766
Full Name
alkB homolog 1%2C histone H2A dioxygenase
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
20904 bases
Position
chr6:111456187-111477090
Accession
1308327
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP000000621852OG-FeII_Oxy_2PF13532.69.2e-3611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000016389-4111XM_006240394ENSRNOP00000062185389 (aa)XP_006240456D3Z8W2
Gene Model
Click here to download ENSRNOG00000012264's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012264's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000012264Alkbh19982.902ENSG00000100601ALKBH19982.902Homo_sapiens
ENSRNOG00000012264Alkbh19953.435ENSAPOG00000001293alkbh19853.435Acanthochromis_polyacanthus
ENSRNOG00000012264Alkbh19983.505ENSAMEG00000003966ALKBH19983.505Ailuropoda_melanoleuca
ENSRNOG00000012264Alkbh18957.349ENSACIG00000000165alkbh18957.349Amphilophus_citrinellus
ENSRNOG00000012264Alkbh19854.427ENSAOCG00000006323alkbh19854.427Amphiprion_ocellaris
ENSRNOG00000012264Alkbh17558.076ENSAOCG00000009356-8658.076Amphiprion_ocellaris
ENSRNOG00000012264Alkbh17457.143ENSAOCG00000004578-9357.143Amphiprion_ocellaris
ENSRNOG00000012264Alkbh18450.459ENSAPEG00000006841-8450.459Amphiprion_percula
ENSRNOG00000012264Alkbh19953.708ENSAPEG00000015899alkbh19853.708Amphiprion_percula
ENSRNOG00000012264Alkbh17949.201ENSAPEG00000008720-8659.459Amphiprion_percula
ENSRNOG00000012264Alkbh110054.798ENSATEG00000013518alkbh19854.798Anabas_testudineus
ENSRNOG00000012264Alkbh18470.821ENSAPLG00000015685ALKBH19970.821Anas_platyrhynchos
ENSRNOG00000012264Alkbh19065.903ENSACAG00000017276ALKBH19963.281Anolis_carolinensis
ENSRNOG00000012264Alkbh19983.679ENSANAG00000023679ALKBH19983.679Aotus_nancymaae
ENSRNOG00000012264Alkbh19946.429ENSACLG00000017932alkbh19846.429Astatotilapia_calliptera
ENSRNOG00000012264Alkbh19158.757ENSAMXG00000034307alkbh18858.757Astyanax_mexicanus
ENSRNOG00000012264Alkbh19981.959ENSBTAG00000008133ALKBH19981.959Bos_taurus
ENSRNOG00000012264Alkbh17930.868WBGene00021783Y51H7C.58230.395Caenorhabditis_elegans
ENSRNOG00000012264Alkbh19983.161ENSCJAG00000016936ALKBH19983.161Callithrix_jacchus
ENSRNOG00000012264Alkbh19982.216ENSCAFG00000017229ALKBH19982.216Canis_familiaris
ENSRNOG00000012264Alkbh19981.959ENSCAFG00020000856ALKBH19981.959Canis_lupus_dingo
ENSRNOG00000012264Alkbh19981.701ENSCHIG00000017896ALKBH19981.701Capra_hircus
ENSRNOG00000012264Alkbh19976.943ENSTSYG00000010944ALKBH19976.943Carlito_syrichta
ENSRNOG00000012264Alkbh18465.138ENSCAPG00000016188ALKBH19964.832Cavia_aperea
ENSRNOG00000012264Alkbh19982.216ENSCPOG00000001498ALKBH19982.216Cavia_porcellus
ENSRNOG00000012264Alkbh19984.197ENSCCAG00000037198ALKBH19984.197Cebus_capucinus
ENSRNOG00000012264Alkbh19984.974ENSCATG00000003846ALKBH19984.974Cercocebus_atys
ENSRNOG00000012264Alkbh19981.959ENSCLAG00000014129ALKBH19981.959Chinchilla_lanigera
ENSRNOG00000012264Alkbh17582.270ENSCHOG00000001531ALKBH17582.270Choloepus_hoffmanni
ENSRNOG00000012264Alkbh19669.519ENSCPBG00000026326ALKBH110068.718Chrysemys_picta_bellii
ENSRNOG00000012264Alkbh18334.242ENSCING00000022762-9934.242Ciona_intestinalis
ENSRNOG00000012264Alkbh16937.818ENSCSAVG00000011640-9933.824Ciona_savignyi
ENSRNOG00000012264Alkbh19984.715ENSCANG00000028132ALKBH19984.715Colobus_angolensis_palliatus
ENSRNOG00000012264Alkbh19990.674ENSCGRG00001009815Alkbh19990.674Cricetulus_griseus_chok1gshd
ENSRNOG00000012264Alkbh19989.119ENSCGRG00000009963Alkbh19989.119Cricetulus_griseus_crigri
ENSRNOG00000012264Alkbh19851.832ENSCSEG00000015769alkbh19651.832Cynoglossus_semilaevis
ENSRNOG00000012264Alkbh19954.805ENSCVAG00000012507alkbh19454.805Cyprinodon_variegatus
ENSRNOG00000012264Alkbh18958.213ENSDARG00000071164alkbh110058.213Danio_rerio
ENSRNOG00000012264Alkbh19984.536ENSDNOG00000007719ALKBH19984.536Dasypus_novemcinctus
ENSRNOG00000012264Alkbh19981.443ENSDORG00000012377Alkbh19981.443Dipodomys_ordii
ENSRNOG00000012264Alkbh18433.634FBgn0065035AlkB9833.634Drosophila_melanogaster
ENSRNOG00000012264Alkbh19978.608ENSETEG00000010342ALKBH19978.608Echinops_telfairi
ENSRNOG00000012264Alkbh19047.684ENSEBUG00000006261alkbh19747.684Eptatretus_burgeri
ENSRNOG00000012264Alkbh19984.021ENSEASG00005020190ALKBH19984.021Equus_asinus_asinus
ENSRNOG00000012264Alkbh19984.536ENSECAG00000022027ALKBH19984.536Equus_caballus
ENSRNOG00000012264Alkbh16367.073ENSEEUG00000007227-10067.073Erinaceus_europaeus
ENSRNOG00000012264Alkbh19159.016ENSELUG00000016747alkbh18659.016Esox_lucius
ENSRNOG00000012264Alkbh19972.494ENSFCAG00000037897ALKBH19972.494Felis_catus
ENSRNOG00000012264Alkbh19965.974ENSFALG00000012588ALKBH19965.974Ficedula_albicollis
ENSRNOG00000012264Alkbh19984.278ENSFDAG00000019064ALKBH19984.278Fukomys_damarensis
ENSRNOG00000012264Alkbh19955.729ENSFHEG00000015690alkbh19558.006Fundulus_heteroclitus
ENSRNOG00000012264Alkbh17556.701ENSGMOG00000016932alkbh19956.701Gadus_morhua
ENSRNOG00000012264Alkbh18772.107ENSGALG00000010485ALKBH18370.141Gallus_gallus
ENSRNOG00000012264Alkbh19955.039ENSGAFG00000010990alkbh19755.039Gambusia_affinis
ENSRNOG00000012264Alkbh17553.584ENSGACG00000013378alkbh19953.584Gasterosteus_aculeatus
ENSRNOG00000012264Alkbh19668.351ENSGAGG00000009957ALKBH19967.609Gopherus_agassizii
ENSRNOG00000012264Alkbh19982.642ENSGGOG00000011055ALKBH19982.642Gorilla_gorilla
ENSRNOG00000012264Alkbh19983.247ENSHGLG00000015533ALKBH19983.247Heterocephalus_glaber_female
ENSRNOG00000012264Alkbh19983.247ENSHGLG00100013968ALKBH19983.247Heterocephalus_glaber_male
ENSRNOG00000012264Alkbh19154.930ENSHCOG00000006780alkbh19154.930Hippocampus_comes
ENSRNOG00000012264Alkbh19159.322ENSIPUG00000010201alkbh19059.322Ictalurus_punctatus
ENSRNOG00000012264Alkbh19280.056ENSSTOG00000024819-9580.056Ictidomys_tridecemlineatus
ENSRNOG00000012264Alkbh19984.021ENSSTOG00000003254-9984.021Ictidomys_tridecemlineatus
ENSRNOG00000012264Alkbh19985.052ENSJJAG00000019755Alkbh19985.052Jaculus_jaculus
ENSRNOG00000012264Alkbh19454.645ENSKMAG00000002019alkbh19154.645Kryptolebias_marmoratus
ENSRNOG00000012264Alkbh19454.891ENSLBEG00000007472alkbh19254.891Labrus_bergylta
ENSRNOG00000012264Alkbh18963.610ENSLACG00000013496ALKBH19163.610Latimeria_chalumnae
ENSRNOG00000012264Alkbh19160.563ENSLOCG00000008800alkbh19160.563Lepisosteus_oculatus
ENSRNOG00000012264Alkbh110082.776ENSLAFG00000003475ALKBH110082.776Loxodonta_africana
ENSRNOG00000012264Alkbh19984.715ENSMFAG00000001551ALKBH19984.715Macaca_fascicularis
ENSRNOG00000012264Alkbh19984.974ENSMMUG00000023626ALKBH19984.974Macaca_mulatta
ENSRNOG00000012264Alkbh19977.720ENSMNEG00000033314ALKBH19977.720Macaca_nemestrina
ENSRNOG00000012264Alkbh19984.715ENSMLEG00000033965ALKBH19984.715Mandrillus_leucophaeus
ENSRNOG00000012264Alkbh19057.265ENSMAMG00000016048alkbh19657.265Mastacembelus_armatus
ENSRNOG00000012264Alkbh19955.357ENSMZEG00005004627alkbh19855.357Maylandia_zebra
ENSRNOG00000012264Alkbh18470.213ENSMGAG00000012910ALKBH19970.213Meleagris_gallopavo
ENSRNOG00000012264Alkbh19972.798ENSMAUG00000012502Alkbh19972.798Mesocricetus_auratus
ENSRNOG00000012264Alkbh19984.021ENSMICG00000030789ALKBH19984.021Microcebus_murinus
ENSRNOG00000012264Alkbh19992.268ENSMOCG00000005374Alkbh19992.268Microtus_ochrogaster
ENSRNOG00000012264Alkbh19553.930ENSMMOG00000018265alkbh19553.930Mola_mola
ENSRNOG00000012264Alkbh19974.742ENSMODG00000005263ALKBH19975.258Monodelphis_domestica
ENSRNOG00000012264Alkbh110053.708ENSMALG00000012608alkbh19953.708Monopterus_albus
ENSRNOG00000012264Alkbh19992.010ENSMUSG00000079036Alkbh19992.010Mus_musculus
ENSRNOG00000012264Alkbh19993.041MGP_PahariEiJ_G0029753Alkbh19993.041Mus_pahari
ENSRNOG00000012264Alkbh19991.495MGP_SPRETEiJ_G0018839Alkbh19991.495Mus_spretus
ENSRNOG00000012264Alkbh19983.247ENSMPUG00000008742ALKBH19983.247Mustela_putorius_furo
ENSRNOG00000012264Alkbh19983.161ENSMLUG00000005220ALKBH19983.161Myotis_lucifugus
ENSRNOG00000012264Alkbh19984.576ENSNGAG00000006997Alkbh19984.576Nannospalax_galili
ENSRNOG00000012264Alkbh19949.235ENSNBRG00000012113alkbh19849.235Neolamprologus_brichardi
ENSRNOG00000012264Alkbh19968.135ENSNLEG00000016766ALKBH19968.135Nomascus_leucogenys
ENSRNOG00000012264Alkbh19966.494ENSMEUG00000015005ALKBH19866.494Notamacropus_eugenii
ENSRNOG00000012264Alkbh19980.208ENSOPRG00000007549ALKBH19980.208Ochotona_princeps
ENSRNOG00000012264Alkbh19457.493ENSONIG00000011694alkbh19855.357Oreochromis_niloticus
ENSRNOG00000012264Alkbh19970.312ENSOANG00000010841ALKBH19970.312Ornithorhynchus_anatinus
ENSRNOG00000012264Alkbh19981.865ENSOCUG00000001438ALKBH19981.865Oryctolagus_cuniculus
ENSRNOG00000012264Alkbh19953.985ENSORLG00000010750alkbh19953.985Oryzias_latipes
ENSRNOG00000012264Alkbh19954.615ENSORLG00020022193alkbh19954.615Oryzias_latipes_hni
ENSRNOG00000012264Alkbh19954.242ENSORLG00015020192alkbh19954.242Oryzias_latipes_hsok
ENSRNOG00000012264Alkbh19956.555ENSOMEG00000019337alkbh19156.555Oryzias_melastigma
ENSRNOG00000012264Alkbh19784.085ENSOGAG00000006929ALKBH19984.085Otolemur_garnettii
ENSRNOG00000012264Alkbh19981.088ENSOARG00000002621ALKBH19981.088Ovis_aries
ENSRNOG00000012264Alkbh19982.642ENSPPAG00000041592ALKBH19982.642Pan_paniscus
ENSRNOG00000012264Alkbh19984.197ENSPPRG00000014697ALKBH19984.197Panthera_pardus
ENSRNOG00000012264Alkbh19983.938ENSPTIG00000014206ALKBH19983.938Panthera_tigris_altaica
ENSRNOG00000012264Alkbh19982.642ENSPTRG00000006586ALKBH19982.642Pan_troglodytes
ENSRNOG00000012264Alkbh19984.974ENSPANG00000006979ALKBH19984.974Papio_anubis
ENSRNOG00000012264Alkbh110055.102ENSPKIG00000014959alkbh19955.102Paramormyrops_kingsleyae
ENSRNOG00000012264Alkbh18171.384ENSPSIG00000011527ALKBH19970.606Pelodiscus_sinensis
ENSRNOG00000012264Alkbh19054.469ENSPMGG00000010538alkbh19754.469Periophthalmus_magnuspinnatus
ENSRNOG00000012264Alkbh19986.768ENSPEMG00000022798Alkbh19986.768Peromyscus_maniculatus_bairdii
ENSRNOG00000012264Alkbh19974.742ENSPCIG00000026843ALKBH19974.742Phascolarctos_cinereus
ENSRNOG00000012264Alkbh19955.181ENSPFOG00000006775alkbh19755.181Poecilia_formosa
ENSRNOG00000012264Alkbh19955.181ENSPLAG00000011128alkbh19755.181Poecilia_latipinna
ENSRNOG00000012264Alkbh19955.181ENSPMEG00000019521alkbh19755.181Poecilia_mexicana
ENSRNOG00000012264Alkbh19955.440ENSPREG00000011690alkbh19755.440Poecilia_reticulata
ENSRNOG00000012264Alkbh19982.902ENSPPYG00000006029ALKBH19982.902Pongo_abelii
ENSRNOG00000012264Alkbh19983.420ENSPCAG00000004251ALKBH19983.420Procavia_capensis
ENSRNOG00000012264Alkbh19984.536ENSPCOG00000027372ALKBH19984.536Propithecus_coquereli
ENSRNOG00000012264Alkbh19983.505ENSPVAG00000006418ALKBH19983.505Pteropus_vampyrus
ENSRNOG00000012264Alkbh19455.707ENSPNYG00000003199alkbh19955.707Pundamilia_nyererei
ENSRNOG00000012264Alkbh19159.605ENSPNAG00000008625alkbh19059.605Pygocentrus_nattereri
ENSRNOG00000012264Alkbh19984.715ENSRBIG00000026838ALKBH19984.715Rhinopithecus_bieti
ENSRNOG00000012264Alkbh19984.715ENSRROG00000041777ALKBH19984.715Rhinopithecus_roxellana
ENSRNOG00000012264Alkbh19984.456ENSSBOG00000014817ALKBH19984.456Saimiri_boliviensis_boliviensis
ENSRNOG00000012264Alkbh19975.064ENSSHAG00000017615ALKBH19875.064Sarcophilus_harrisii
ENSRNOG00000012264Alkbh19355.647ENSSFOG00015022204alkbh19155.647Scleropages_formosus
ENSRNOG00000012264Alkbh110054.242ENSSMAG00000012912alkbh19854.242Scophthalmus_maximus
ENSRNOG00000012264Alkbh19155.211ENSSDUG00000021889alkbh19255.211Seriola_dumerili
ENSRNOG00000012264Alkbh19156.145ENSSLDG00000023125alkbh19256.145Seriola_lalandi_dorsalis
ENSRNOG00000012264Alkbh19970.466ENSSARG00000006523ALKBH19970.466Sorex_araneus
ENSRNOG00000012264Alkbh19556.640ENSSPUG00000009359ALKBH19756.640Sphenodon_punctatus
ENSRNOG00000012264Alkbh19853.646ENSSPAG00000013486alkbh19753.646Stegastes_partitus
ENSRNOG00000012264Alkbh19981.865ENSSSCG00000025906ALKBH19981.865Sus_scrofa
ENSRNOG00000012264Alkbh19866.841ENSTGUG00000012335ALKBH19966.841Taeniopygia_guttata
ENSRNOG00000012264Alkbh19654.155ENSTRUG00000022051alkbh19554.155Takifugu_rubripes
ENSRNOG00000012264Alkbh19455.769ENSTNIG00000003557alkbh19455.769Tetraodon_nigroviridis
ENSRNOG00000012264Alkbh19984.197ENSTBEG00000013830ALKBH19984.197Tupaia_belangeri
ENSRNOG00000012264Alkbh18380.851ENSTTRG00000009325ALKBH18380.851Tursiops_truncatus
ENSRNOG00000012264Alkbh19983.247ENSUAMG00000022446ALKBH19983.247Ursus_americanus
ENSRNOG00000012264Alkbh19982.990ENSUMAG00000007173ALKBH19982.990Ursus_maritimus
ENSRNOG00000012264Alkbh19984.197ENSVPAG00000001780ALKBH19984.197Vicugna_pacos
ENSRNOG00000012264Alkbh19982.216ENSVVUG00000004431ALKBH19982.216Vulpes_vulpes
ENSRNOG00000012264Alkbh19060.057ENSXETG00000011086alkbh18660.057Xenopus_tropicalis
ENSRNOG00000012264Alkbh19256.863ENSXCOG00000009419alkbh19756.863Xiphophorus_couchianus
ENSRNOG00000012264Alkbh19954.987ENSXMAG00000015656alkbh19854.987Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000049tRNA binding-IEAFunction
GO:0000049tRNA binding-ISOFunction
GO:0001701in utero embryonic development-IEAProcess
GO:0001701in utero embryonic development-ISOProcess
GO:0001764neuron migration-IEAProcess
GO:0001764neuron migration-ISOProcess
GO:0001890placenta development-IEAProcess
GO:0001890placenta development-ISOProcess
GO:0002101tRNA wobble cytosine modification-IEAProcess
GO:0002101tRNA wobble cytosine modification-ISOProcess
GO:0005719nuclear euchromatin21873635.IBAComponent
GO:0005719nuclear euchromatin-ISOComponent
GO:0005739mitochondrion21873635.IBAComponent
GO:0005739mitochondrion-ISOComponent
GO:0006281DNA repair-ISOProcess
GO:0006307DNA dealkylation involved in DNA repair-IEAProcess
GO:0006307DNA dealkylation involved in DNA repair-ISOProcess
GO:0006446regulation of translational initiation-IEAProcess
GO:0006446regulation of translational initiation-ISOProcess
GO:0006448regulation of translational elongation-IEAProcess
GO:0006448regulation of translational elongation-ISOProcess
GO:0008198ferrous iron binding21873635.IBAFunction
GO:0008198ferrous iron binding-ISOFunction
GO:0010468regulation of gene expression-ISOProcess
GO:0016706oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors-ISOFunction
GO:0030154cell differentiation-ISOProcess
GO:0031175neuron projection development-IEAProcess
GO:0031175neuron projection development-ISOProcess
GO:0035511oxidative DNA demethylation-IEAProcess
GO:0035516oxidative DNA demethylase activity-IEAFunction
GO:0035516oxidative DNA demethylase activity-ISOFunction
GO:0042056chemoattractant activity-IEAFunction
GO:0042056chemoattractant activity-ISOFunction
GO:0042245RNA repair-IEAProcess
GO:0042245RNA repair-ISOProcess
GO:0043524negative regulation of neuron apoptotic process-IEAProcess
GO:0043524negative regulation of neuron apoptotic process-ISOProcess
GO:0048589developmental growth-IEAProcess
GO:0048589developmental growth-ISOProcess
GO:0050918positive chemotaxis-IEAProcess
GO:0051213dioxygenase activity21873635.IBAFunction
GO:0070129regulation of mitochondrial translation-IEAProcess
GO:0070129regulation of mitochondrial translation-ISOProcess
GO:0070579methylcytosine dioxygenase activity-IEAFunction
GO:0070579methylcytosine dioxygenase activity-ISOFunction
GO:0070989oxidative demethylation-ISOProcess
GO:0080111DNA demethylation-ISOProcess
GO:0140078class I DNA-(apurinic or apyrimidinic site) endonuclease activity-IEAFunction
GO:0140078class I DNA-(apurinic or apyrimidinic site) endonuclease activity-ISOFunction
GO:1990983tRNA demethylation-IEAProcess
GO:1990983tRNA demethylation-ISOProcess
GO:1990984tRNA demethylase activity-IEAFunction
GO:1990984tRNA demethylase activity-ISOFunction

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