EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012271 (Gene tree)
Gene ID: 291841
Gene Symbol: Cnot1
Alias: LOC291841|MGC116302|RGD1308009
Full Name: CCR4-NOT transcription complex%2C subunit 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 93420 bases
Position: chr19:9668186-9761605
Accession: 1308009
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000016563	Not1	PF04054.15	9.8e-153	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000016563	-	7714	XM_008772271	ENSRNOP00000016563	2376 (aa)	-	G3V7M0

Gene Model

Click here to download ENSRNOG00000012271's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03018	RNA degradation	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012271's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012271	Cnot1	100	99.327	ENSG00000125107	CNOT1	100	100.000	Homo_sapiens
ENSRNOG00000012271	Cnot1	97	96.634	ENSAPOG00000005042	cnot1	100	96.634	Acanthochromis_polyacanthus
ENSRNOG00000012271	Cnot1	100	99.158	ENSAMEG00000017298	CNOT1	100	99.158	Ailuropoda_melanoleuca
ENSRNOG00000012271	Cnot1	90	89.655	ENSACIG00000016003	cnot1	100	89.981	Amphilophus_citrinellus
ENSRNOG00000012271	Cnot1	100	90.386	ENSAPEG00000022342	cnot1	100	90.512	Amphiprion_percula
ENSRNOG00000012271	Cnot1	97	96.774	ENSATEG00000012892	cnot1	100	96.774	Anabas_testudineus
ENSRNOG00000012271	Cnot1	100	97.353	ENSAPLG00000007162	CNOT1	100	97.353	Anas_platyrhynchos
ENSRNOG00000012271	Cnot1	91	96.058	ENSACAG00000001602	CNOT1	98	96.011	Anolis_carolinensis
ENSRNOG00000012271	Cnot1	100	96.439	ENSANAG00000038198	CNOT1	100	96.439	Aotus_nancymaae
ENSRNOG00000012271	Cnot1	97	96.774	ENSACLG00000014234	cnot1	100	96.774	Astatotilapia_calliptera
ENSRNOG00000012271	Cnot1	100	90.745	ENSAMXG00000013170	cnot1	100	91.253	Astyanax_mexicanus
ENSRNOG00000012271	Cnot1	100	99.537	ENSBTAG00000020782	CNOT1	100	99.537	Bos_taurus
ENSRNOG00000012271	Cnot1	81	40.442	WBGene00002845	let-711	92	54.430	Caenorhabditis_elegans
ENSRNOG00000012271	Cnot1	100	99.285	ENSCJAG00000011318	CNOT1	100	99.285	Callithrix_jacchus
ENSRNOG00000012271	Cnot1	100	99.076	ENSCAFG00000008426	CNOT1	100	99.076	Canis_familiaris
ENSRNOG00000012271	Cnot1	100	98.323	ENSCAFG00020010156	CNOT1	100	98.917	Canis_lupus_dingo
ENSRNOG00000012271	Cnot1	100	99.537	ENSCHIG00000010452	CNOT1	100	99.537	Capra_hircus
ENSRNOG00000012271	Cnot1	100	99.453	ENSTSYG00000006888	CNOT1	100	99.453	Carlito_syrichta
ENSRNOG00000012271	Cnot1	100	94.907	ENSCPOG00000013026	CNOT1	100	94.907	Cavia_porcellus
ENSRNOG00000012271	Cnot1	100	97.727	ENSCCAG00000026333	CNOT1	100	97.727	Cebus_capucinus
ENSRNOG00000012271	Cnot1	100	99.369	ENSCATG00000032625	CNOT1	100	99.369	Cercocebus_atys
ENSRNOG00000012271	Cnot1	100	99.579	ENSCLAG00000006289	CNOT1	100	99.579	Chinchilla_lanigera
ENSRNOG00000012271	Cnot1	100	99.369	ENSCSAG00000004731	CNOT1	100	99.369	Chlorocebus_sabaeus
ENSRNOG00000012271	Cnot1	81	100.000	ENSCHOG00000009712	CNOT1	83	100.000	Choloepus_hoffmanni
ENSRNOG00000012271	Cnot1	95	98.333	ENSCPBG00000026222	CNOT1	99	98.333	Chrysemys_picta_bellii
ENSRNOG00000012271	Cnot1	100	58.936	ENSCING00000009149	-	100	58.589	Ciona_intestinalis
ENSRNOG00000012271	Cnot1	89	62.973	ENSCSAVG00000002414	-	95	78.808	Ciona_savignyi
ENSRNOG00000012271	Cnot1	100	97.284	ENSCANG00000040534	CNOT1	100	97.284	Colobus_angolensis_palliatus
ENSRNOG00000012271	Cnot1	100	99.747	ENSCGRG00001016365	Cnot1	100	99.747	Cricetulus_griseus_chok1gshd
ENSRNOG00000012271	Cnot1	100	99.747	ENSCGRG00000001714	Cnot1	100	99.747	Cricetulus_griseus_crigri
ENSRNOG00000012271	Cnot1	97	96.073	ENSCVAG00000018930	cnot1	100	96.073	Cyprinodon_variegatus
ENSRNOG00000012271	Cnot1	100	89.858	ENSDARG00000004174	cnot1	100	89.816	Danio_rerio
ENSRNOG00000012271	Cnot1	100	96.845	ENSDNOG00000013250	CNOT1	100	96.845	Dasypus_novemcinctus
ENSRNOG00000012271	Cnot1	99	46.190	FBgn0085436	Not1	99	48.037	Drosophila_melanogaster
ENSRNOG00000012271	Cnot1	84	97.440	ENSETEG00000012806	CNOT1	84	97.440	Echinops_telfairi
ENSRNOG00000012271	Cnot1	81	76.682	ENSEBUG00000011534	cnot1	95	76.682	Eptatretus_burgeri
ENSRNOG00000012271	Cnot1	100	95.678	ENSEASG00005005819	CNOT1	100	98.802	Equus_asinus_asinus
ENSRNOG00000012271	Cnot1	100	99.537	ENSECAG00000009889	CNOT1	100	99.537	Equus_caballus
ENSRNOG00000012271	Cnot1	90	98.903	ENSEEUG00000006015	CNOT1	90	98.903	Erinaceus_europaeus
ENSRNOG00000012271	Cnot1	100	89.611	ENSELUG00000014085	cnot1	100	89.334	Esox_lucius
ENSRNOG00000012271	Cnot1	100	99.161	ENSFCAG00000025155	CNOT1	100	99.161	Felis_catus
ENSRNOG00000012271	Cnot1	100	97.391	ENSFALG00000007285	CNOT1	100	97.391	Ficedula_albicollis
ENSRNOG00000012271	Cnot1	100	99.495	ENSFDAG00000013399	CNOT1	100	99.495	Fukomys_damarensis
ENSRNOG00000012271	Cnot1	100	90.130	ENSFHEG00000020574	cnot1	100	90.130	Fundulus_heteroclitus
ENSRNOG00000012271	Cnot1	91	89.264	ENSGMOG00000012864	cnot1	100	89.588	Gadus_morhua
ENSRNOG00000012271	Cnot1	100	97.433	ENSGALG00000002301	CNOT1	100	97.433	Gallus_gallus
ENSRNOG00000012271	Cnot1	100	89.001	ENSGAFG00000015005	cnot1	100	88.959	Gambusia_affinis
ENSRNOG00000012271	Cnot1	91	89.917	ENSGACG00000002606	cnot1	100	95.510	Gasterosteus_aculeatus
ENSRNOG00000012271	Cnot1	100	97.476	ENSGAGG00000022646	CNOT1	100	97.476	Gopherus_agassizii
ENSRNOG00000012271	Cnot1	100	99.285	ENSGGOG00000009547	CNOT1	100	99.285	Gorilla_gorilla
ENSRNOG00000012271	Cnot1	97	96.774	ENSHBUG00000001729	cnot1	100	96.774	Haplochromis_burtoni
ENSRNOG00000012271	Cnot1	100	99.411	ENSHGLG00000014322	CNOT1	100	99.411	Heterocephalus_glaber_female
ENSRNOG00000012271	Cnot1	100	89.172	ENSHCOG00000006501	cnot1	100	89.311	Hippocampus_comes
ENSRNOG00000012271	Cnot1	100	88.674	ENSIPUG00000011915	cnot1	100	89.136	Ictalurus_punctatus
ENSRNOG00000012271	Cnot1	100	99.411	ENSSTOG00000005490	CNOT1	100	99.411	Ictidomys_tridecemlineatus
ENSRNOG00000012271	Cnot1	100	98.864	ENSJJAG00000000633	Cnot1	100	98.864	Jaculus_jaculus
ENSRNOG00000012271	Cnot1	100	90.004	ENSKMAG00000006149	cnot1	100	89.883	Kryptolebias_marmoratus
ENSRNOG00000012271	Cnot1	95	96.407	ENSLBEG00000004740	cnot1	100	96.407	Labrus_bergylta
ENSRNOG00000012271	Cnot1	100	94.907	ENSLACG00000010869	CNOT1	100	94.907	Latimeria_chalumnae
ENSRNOG00000012271	Cnot1	100	92.743	ENSLOCG00000006324	cnot1	100	92.785	Lepisosteus_oculatus
ENSRNOG00000012271	Cnot1	100	99.201	ENSLAFG00000000098	CNOT1	100	99.201	Loxodonta_africana
ENSRNOG00000012271	Cnot1	100	99.116	ENSMFAG00000035888	CNOT1	100	99.116	Macaca_fascicularis
ENSRNOG00000012271	Cnot1	100	99.327	ENSMMUG00000014625	CNOT1	100	99.327	Macaca_mulatta
ENSRNOG00000012271	Cnot1	100	96.559	ENSMNEG00000031820	CNOT1	100	99.393	Macaca_nemestrina
ENSRNOG00000012271	Cnot1	100	97.938	ENSMLEG00000040933	CNOT1	100	97.938	Mandrillus_leucophaeus
ENSRNOG00000012271	Cnot1	100	89.299	ENSMAMG00000016524	cnot1	100	89.295	Mastacembelus_armatus
ENSRNOG00000012271	Cnot1	97	96.774	ENSMZEG00005016210	cnot1	100	96.774	Maylandia_zebra
ENSRNOG00000012271	Cnot1	100	97.180	ENSMGAG00000001908	CNOT1	100	97.180	Meleagris_gallopavo
ENSRNOG00000012271	Cnot1	100	99.242	ENSMICG00000007071	CNOT1	100	99.242	Microcebus_murinus
ENSRNOG00000012271	Cnot1	100	99.790	ENSMOCG00000017969	Cnot1	100	99.790	Microtus_ochrogaster
ENSRNOG00000012271	Cnot1	97	93.408	ENSMMOG00000019134	cnot1	100	93.408	Mola_mola
ENSRNOG00000012271	Cnot1	100	97.560	ENSMODG00000014199	CNOT1	100	97.560	Monodelphis_domestica
ENSRNOG00000012271	Cnot1	100	90.004	ENSMALG00000008645	cnot1	100	90.046	Monopterus_albus
ENSRNOG00000012271	Cnot1	95	99.889	MGP_CAROLIEiJ_G0031430	Cnot1	92	99.889	Mus_caroli
ENSRNOG00000012271	Cnot1	100	99.916	ENSMUSG00000036550	Cnot1	100	99.916	Mus_musculus
ENSRNOG00000012271	Cnot1	100	99.958	MGP_PahariEiJ_G0023028	Cnot1	100	99.958	Mus_pahari
ENSRNOG00000012271	Cnot1	100	99.916	MGP_SPRETEiJ_G0032549	Cnot1	100	99.916	Mus_spretus
ENSRNOG00000012271	Cnot1	100	99.453	ENSMPUG00000004830	CNOT1	100	99.453	Mustela_putorius_furo
ENSRNOG00000012271	Cnot1	100	98.864	ENSMLUG00000003728	CNOT1	100	98.864	Myotis_lucifugus
ENSRNOG00000012271	Cnot1	100	99.537	ENSNGAG00000018628	Cnot1	100	99.537	Nannospalax_galili
ENSRNOG00000012271	Cnot1	94	96.774	ENSNBRG00000019358	cnot1	100	96.774	Neolamprologus_brichardi
ENSRNOG00000012271	Cnot1	100	99.242	ENSNLEG00000003566	CNOT1	100	99.242	Nomascus_leucogenys
ENSRNOG00000012271	Cnot1	86	97.763	ENSMEUG00000006145	CNOT1	87	97.763	Notamacropus_eugenii
ENSRNOG00000012271	Cnot1	86	100.000	ENSOPRG00000005604	CNOT1	86	100.000	Ochotona_princeps
ENSRNOG00000012271	Cnot1	100	99.453	ENSODEG00000016337	CNOT1	100	99.453	Octodon_degus
ENSRNOG00000012271	Cnot1	100	90.369	ENSONIG00000007358	cnot1	100	89.962	Oreochromis_niloticus
ENSRNOG00000012271	Cnot1	91	97.675	ENSOANG00000012109	CNOT1	100	98.025	Ornithorhynchus_anatinus
ENSRNOG00000012271	Cnot1	100	99.369	ENSOCUG00000006911	CNOT1	100	99.369	Oryctolagus_cuniculus
ENSRNOG00000012271	Cnot1	100	90.398	ENSORLG00000013734	cnot1	100	90.352	Oryzias_latipes
ENSRNOG00000012271	Cnot1	100	88.744	ENSORLG00020017012	cnot1	100	88.507	Oryzias_latipes_hni
ENSRNOG00000012271	Cnot1	100	88.576	ENSORLG00015007091	cnot1	100	88.087	Oryzias_latipes_hsok
ENSRNOG00000012271	Cnot1	100	87.914	ENSOMEG00000015124	cnot1	100	88.161	Oryzias_melastigma
ENSRNOG00000012271	Cnot1	100	99.285	ENSOGAG00000000543	CNOT1	100	99.285	Otolemur_garnettii
ENSRNOG00000012271	Cnot1	100	99.537	ENSOARG00000001567	CNOT1	100	99.537	Ovis_aries
ENSRNOG00000012271	Cnot1	100	99.327	ENSPPAG00000022013	CNOT1	100	99.327	Pan_paniscus
ENSRNOG00000012271	Cnot1	100	99.453	ENSPPRG00000004867	CNOT1	100	99.453	Panthera_pardus
ENSRNOG00000012271	Cnot1	100	99.453	ENSPTIG00000012589	CNOT1	100	99.453	Panthera_tigris_altaica
ENSRNOG00000012271	Cnot1	100	99.035	ENSPTRG00000008183	CNOT1	100	99.035	Pan_troglodytes
ENSRNOG00000012271	Cnot1	100	95.893	ENSPANG00000020901	CNOT1	100	95.893	Papio_anubis
ENSRNOG00000012271	Cnot1	100	92.027	ENSPKIG00000023538	CNOT1	100	92.195	Paramormyrops_kingsleyae
ENSRNOG00000012271	Cnot1	97	92.978	ENSPKIG00000002914	CNOT1	99	92.978	Paramormyrops_kingsleyae
ENSRNOG00000012271	Cnot1	100	97.348	ENSPSIG00000005499	CNOT1	100	97.348	Pelodiscus_sinensis
ENSRNOG00000012271	Cnot1	100	81.250	ENSPMAG00000009381	cnot1	100	81.150	Petromyzon_marinus
ENSRNOG00000012271	Cnot1	100	96.537	ENSPCIG00000007343	CNOT1	100	98.333	Phascolarctos_cinereus
ENSRNOG00000012271	Cnot1	99	89.598	ENSPFOG00000003497	cnot1	100	89.514	Poecilia_formosa
ENSRNOG00000012271	Cnot1	95	96.008	ENSPLAG00000014018	cnot1	100	96.008	Poecilia_latipinna
ENSRNOG00000012271	Cnot1	95	96.008	ENSPMEG00000005868	cnot1	100	96.008	Poecilia_mexicana
ENSRNOG00000012271	Cnot1	95	96.008	ENSPREG00000018793	cnot1	100	96.008	Poecilia_reticulata
ENSRNOG00000012271	Cnot1	100	99.285	ENSPPYG00000007410	CNOT1	100	99.285	Pongo_abelii
ENSRNOG00000012271	Cnot1	90	97.104	ENSPCAG00000003241	CNOT1	90	97.104	Procavia_capensis
ENSRNOG00000012271	Cnot1	100	98.993	ENSPCOG00000027139	CNOT1	100	98.993	Propithecus_coquereli
ENSRNOG00000012271	Cnot1	100	96.886	ENSPVAG00000004243	CNOT1	100	96.886	Pteropus_vampyrus
ENSRNOG00000012271	Cnot1	97	96.774	ENSPNYG00000012919	cnot1	100	96.774	Pundamilia_nyererei
ENSRNOG00000012271	Cnot1	100	89.651	ENSPNAG00000000246	cnot1	100	90.072	Pygocentrus_nattereri
ENSRNOG00000012271	Cnot1	100	97.021	ENSRBIG00000044598	CNOT1	100	97.021	Rhinopithecus_bieti
ENSRNOG00000012271	Cnot1	100	99.369	ENSRROG00000000906	CNOT1	100	99.369	Rhinopithecus_roxellana
ENSRNOG00000012271	Cnot1	56	31.373	YCR093W	CDC39	68	34.074	Saccharomyces_cerevisiae
ENSRNOG00000012271	Cnot1	100	94.893	ENSSBOG00000029155	CNOT1	100	94.893	Saimiri_boliviensis_boliviensis
ENSRNOG00000012271	Cnot1	100	97.729	ENSSHAG00000012187	CNOT1	100	97.729	Sarcophilus_harrisii
ENSRNOG00000012271	Cnot1	100	90.314	ENSSFOG00015017614	cnot1	100	90.059	Scleropages_formosus
ENSRNOG00000012271	Cnot1	97	96.774	ENSSMAG00000013844	cnot1	100	96.774	Scophthalmus_maximus
ENSRNOG00000012271	Cnot1	97	96.634	ENSSDUG00000021491	cnot1	100	96.634	Seriola_dumerili
ENSRNOG00000012271	Cnot1	97	96.634	ENSSLDG00000014816	cnot1	100	96.634	Seriola_lalandi_dorsalis
ENSRNOG00000012271	Cnot1	84	100.000	ENSSARG00000000762	CNOT1	88	100.000	Sorex_araneus
ENSRNOG00000012271	Cnot1	100	90.390	ENSSPAG00000018802	cnot1	100	90.180	Stegastes_partitus
ENSRNOG00000012271	Cnot1	100	99.327	ENSSSCG00000002799	CNOT1	100	99.327	Sus_scrofa
ENSRNOG00000012271	Cnot1	100	97.268	ENSTGUG00000005919	CNOT1	100	97.268	Taeniopygia_guttata
ENSRNOG00000012271	Cnot1	100	88.903	ENSTNIG00000018706	cnot1	100	88.667	Tetraodon_nigroviridis
ENSRNOG00000012271	Cnot1	80	100.000	ENSTBEG00000000720	CNOT1	80	100.000	Tupaia_belangeri
ENSRNOG00000012271	Cnot1	95	99.242	ENSTTRG00000008460	CNOT1	95	99.242	Tursiops_truncatus
ENSRNOG00000012271	Cnot1	100	99.453	ENSUAMG00000009251	CNOT1	100	99.453	Ursus_americanus
ENSRNOG00000012271	Cnot1	100	99.453	ENSUMAG00000021291	CNOT1	100	99.453	Ursus_maritimus
ENSRNOG00000012271	Cnot1	97	96.809	ENSVPAG00000008846	CNOT1	97	96.809	Vicugna_pacos
ENSRNOG00000012271	Cnot1	100	98.323	ENSVVUG00000024037	CNOT1	100	98.917	Vulpes_vulpes
ENSRNOG00000012271	Cnot1	100	90.050	ENSXETG00000015900	cnot1	100	89.840	Xenopus_tropicalis
ENSRNOG00000012271	Cnot1	100	89.169	ENSXCOG00000013552	cnot1	100	89.127	Xiphophorus_couchianus
ENSRNOG00000012271	Cnot1	100	89.211	ENSXMAG00000006031	cnot1	100	89.169	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000932	P-body	21873635.	IBA	Component
GO:0000932	P-body	-	ISO	Component
GO:0001829	trophectodermal cell differentiation	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	IEA	Function
GO:0004535	poly(A)-specific ribonuclease activity	-	ISO	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	IEA	Process
GO:0010606	positive regulation of cytoplasmic mRNA processing body assembly	-	ISO	Process
GO:0017148	negative regulation of translation	21873635.	IBA	Process
GO:0017148	negative regulation of translation	-	ISO	Process
GO:0019904	protein domain specific binding	-	ISO	Function
GO:0030014	CCR4-NOT complex	-	ISO	Component
GO:0030015	CCR4-NOT core complex	-	IEA	Component
GO:0030331	estrogen receptor binding	-	IEA	Function
GO:0030331	estrogen receptor binding	-	ISO	Function
GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	-	IEA	Process
GO:0033147	negative regulation of intracellular estrogen receptor signaling pathway	-	ISO	Process
GO:0035195	gene silencing by miRNA	-	IEA	Process
GO:0035195	gene silencing by miRNA	-	ISO	Process
GO:0042974	retinoic acid receptor binding	-	IEA	Function
GO:0042974	retinoic acid receptor binding	-	ISO	Function
GO:0048387	negative regulation of retinoic acid receptor signaling pathway	-	IEA	Process
GO:0048387	negative regulation of retinoic acid receptor signaling pathway	-	ISO	Process
GO:0060090	molecular adaptor activity	21873635.	IBA	Function
GO:0060090	molecular adaptor activity	-	ISO	Function
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	IEA	Process
GO:0060213	positive regulation of nuclear-transcribed mRNA poly(A) tail shortening	-	ISO	Process
GO:0061014	positive regulation of mRNA catabolic process	-	ISO	Process
GO:0070016	armadillo repeat domain binding	-	IEA	Function
GO:0070016	armadillo repeat domain binding	-	ISO	Function
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:1900153	positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	-	ISO	Process
GO:2000036	regulation of stem cell population maintenance	21873635.	IBA	Process
GO:2000036	regulation of stem cell population maintenance	-	ISO	Process