EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012284 (Gene tree)
Gene ID: 170843
Gene Symbol: Khdrbs2
Alias: SLM-1|Slm1|rSLM-1
Full Name: KH RNA binding domain containing%2C signal transduction associated 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 469151 bases
Position: chr9:39539530-40008680
Accession: 621738
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000016579	KH_1	PF00013.29	5.6e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000016578	-	1953	XM_008766952	ENSRNOP00000016579	349 (aa)	XP_008765174	Q920F3

Gene Model

Click here to download ENSRNOG00000012284's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012284's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012284	Khdrbs2	77	35.862	ENSRNOG00000048297	LOC108348175	58	41.579
ENSRNOG00000012284	Khdrbs2	99	66.573	ENSRNOG00000009539	Khdrbs3	99	64.470
ENSRNOG00000012284	Khdrbs2	99	60.221	ENSRNOG00000046794	Khdrbs1	78	62.040

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSG00000112232	KHDRBS2	100	95.415	Homo_sapiens
ENSRNOG00000012284	Khdrbs2	100	68.376	ENSAPOG00000008806	khdrbs2	100	66.667	Acanthochromis_polyacanthus
ENSRNOG00000012284	Khdrbs2	77	95.926	ENSAMEG00000007111	KHDRBS2	94	96.047	Ailuropoda_melanoleuca
ENSRNOG00000012284	Khdrbs2	100	67.614	ENSACIG00000020525	khdrbs2	100	65.341	Amphilophus_citrinellus
ENSRNOG00000012284	Khdrbs2	100	67.521	ENSAOCG00000011333	khdrbs2	100	66.382	Amphiprion_ocellaris
ENSRNOG00000012284	Khdrbs2	96	64.793	ENSAPEG00000019843	khdrbs2	99	64.072	Amphiprion_percula
ENSRNOG00000012284	Khdrbs2	100	68.091	ENSATEG00000020863	khdrbs2	100	67.236	Anabas_testudineus
ENSRNOG00000012284	Khdrbs2	100	91.117	ENSAPLG00000013452	KHDRBS2	100	90.258	Anas_platyrhynchos
ENSRNOG00000012284	Khdrbs2	100	87.966	ENSACAG00000006691	KHDRBS2	100	87.106	Anolis_carolinensis
ENSRNOG00000012284	Khdrbs2	85	96.633	ENSANAG00000024792	KHDRBS2	99	96.633	Aotus_nancymaae
ENSRNOG00000012284	Khdrbs2	100	69.034	ENSACLG00000002710	khdrbs2	100	67.614	Astatotilapia_calliptera
ENSRNOG00000012284	Khdrbs2	88	74.757	ENSAMXG00000009582	khdrbs2	89	72.492	Astyanax_mexicanus
ENSRNOG00000012284	Khdrbs2	100	89.685	ENSBTAG00000043990	KHDRBS2	100	90.831	Bos_taurus
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSCJAG00000001766	KHDRBS2	100	95.989	Callithrix_jacchus
ENSRNOG00000012284	Khdrbs2	100	94.842	ENSCAFG00000002470	KHDRBS2	100	94.842	Canis_familiaris
ENSRNOG00000012284	Khdrbs2	100	94.842	ENSCAFG00020015926	KHDRBS2	100	94.842	Canis_lupus_dingo
ENSRNOG00000012284	Khdrbs2	100	89.112	ENSCHIG00000024242	KHDRBS2	100	89.112	Capra_hircus
ENSRNOG00000012284	Khdrbs2	91	96.226	ENSTSYG00000007203	KHDRBS2	91	96.226	Carlito_syrichta
ENSRNOG00000012284	Khdrbs2	91	92.767	ENSCPOG00000025621	KHDRBS2	100	92.767	Cavia_porcellus
ENSRNOG00000012284	Khdrbs2	100	79.656	ENSCCAG00000037746	KHDRBS2	100	81.089	Cebus_capucinus
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSCATG00000042976	KHDRBS2	100	95.989	Cercocebus_atys
ENSRNOG00000012284	Khdrbs2	91	94.654	ENSCLAG00000000509	KHDRBS2	100	94.654	Chinchilla_lanigera
ENSRNOG00000012284	Khdrbs2	77	96.296	ENSCSAG00000013462	KHDRBS2	98	96.296	Chlorocebus_sabaeus
ENSRNOG00000012284	Khdrbs2	100	67.908	ENSCHOG00000013616	KHDRBS2	100	67.622	Choloepus_hoffmanni
ENSRNOG00000012284	Khdrbs2	100	91.977	ENSCPBG00000022649	KHDRBS2	100	91.117	Chrysemys_picta_bellii
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSCANG00000021348	KHDRBS2	100	95.989	Colobus_angolensis_palliatus
ENSRNOG00000012284	Khdrbs2	100	97.421	ENSCGRG00001022657	Khdrbs2	100	97.421	Cricetulus_griseus_chok1gshd
ENSRNOG00000012284	Khdrbs2	77	97.407	ENSCGRG00000003079	-	96	97.407	Cricetulus_griseus_crigri
ENSRNOG00000012284	Khdrbs2	100	59.312	ENSCSEG00000005064	khdrbs2	100	61.429	Cynoglossus_semilaevis
ENSRNOG00000012284	Khdrbs2	77	85.106	ENSCVAG00000020560	khdrbs2	99	81.773	Cyprinodon_variegatus
ENSRNOG00000012284	Khdrbs2	100	73.429	ENSDARG00000069469	khdrbs2	100	71.143	Danio_rerio
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSDNOG00000014028	KHDRBS2	100	95.415	Dasypus_novemcinctus
ENSRNOG00000012284	Khdrbs2	94	86.239	ENSDORG00000005701	Khdrbs2	100	87.421	Dipodomys_ordii
ENSRNOG00000012284	Khdrbs2	100	77.364	ENSETEG00000002241	KHDRBS2	100	77.364	Echinops_telfairi
ENSRNOG00000012284	Khdrbs2	93	54.942	ENSEBUG00000007730	khdrbs2	98	51.307	Eptatretus_burgeri
ENSRNOG00000012284	Khdrbs2	79	49.324	ENSEBUG00000012421	khdrbs2	99	47.079	Eptatretus_burgeri
ENSRNOG00000012284	Khdrbs2	99	48.696	ENSEBUG00000007596	khdrbs2	88	47.674	Eptatretus_burgeri
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSEASG00005003578	KHDRBS2	100	95.415	Equus_asinus_asinus
ENSRNOG00000012284	Khdrbs2	100	95.129	ENSECAG00000021541	KHDRBS2	100	95.129	Equus_caballus
ENSRNOG00000012284	Khdrbs2	91	93.375	ENSEEUG00000003986	KHDRBS2	100	93.375	Erinaceus_europaeus
ENSRNOG00000012284	Khdrbs2	100	72.080	ENSELUG00000020898	khdrbs2	100	68.286	Esox_lucius
ENSRNOG00000012284	Khdrbs2	100	96.275	ENSFCAG00000046207	KHDRBS2	78	96.275	Felis_catus
ENSRNOG00000012284	Khdrbs2	91	89.342	ENSFALG00000001691	KHDRBS2	99	89.655	Ficedula_albicollis
ENSRNOG00000012284	Khdrbs2	91	83.333	ENSFDAG00000008941	KHDRBS2	100	81.761	Fukomys_damarensis
ENSRNOG00000012284	Khdrbs2	81	49.481	ENSFHEG00000021135	khdrbs2	89	47.751	Fundulus_heteroclitus
ENSRNOG00000012284	Khdrbs2	100	61.473	ENSGMOG00000005065	khdrbs2	100	60.227	Gadus_morhua
ENSRNOG00000012284	Khdrbs2	100	89.685	ENSGALG00000016276	KHDRBS2	100	88.825	Gallus_gallus
ENSRNOG00000012284	Khdrbs2	100	68.376	ENSGAFG00000007645	khdrbs2	100	66.667	Gambusia_affinis
ENSRNOG00000012284	Khdrbs2	100	67.139	ENSGACG00000006097	khdrbs2	100	65.909	Gasterosteus_aculeatus
ENSRNOG00000012284	Khdrbs2	64	84.685	ENSGAGG00000023457	-	63	91.111	Gopherus_agassizii
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSGGOG00000025068	KHDRBS2	100	95.415	Gorilla_gorilla
ENSRNOG00000012284	Khdrbs2	100	69.034	ENSHBUG00000008029	khdrbs2	100	67.614	Haplochromis_burtoni
ENSRNOG00000012284	Khdrbs2	100	91.691	ENSHGLG00000017439	KHDRBS2	100	91.691	Heterocephalus_glaber_female
ENSRNOG00000012284	Khdrbs2	100	91.691	ENSHGLG00100003817	KHDRBS2	100	91.691	Heterocephalus_glaber_male
ENSRNOG00000012284	Khdrbs2	74	71.374	ENSHCOG00000013857	khdrbs2	100	61.473	Hippocampus_comes
ENSRNOG00000012284	Khdrbs2	100	76.000	ENSIPUG00000015437	khdrbs2	100	74.571	Ictalurus_punctatus
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSSTOG00000011529	KHDRBS2	100	95.989	Ictidomys_tridecemlineatus
ENSRNOG00000012284	Khdrbs2	100	95.129	ENSJJAG00000017812	Khdrbs2	100	95.129	Jaculus_jaculus
ENSRNOG00000012284	Khdrbs2	100	69.318	ENSKMAG00000018214	khdrbs2	100	67.236	Kryptolebias_marmoratus
ENSRNOG00000012284	Khdrbs2	99	66.189	ENSLBEG00000013077	khdrbs2	86	65.043	Labrus_bergylta
ENSRNOG00000012284	Khdrbs2	100	78.571	ENSLOCG00000017016	khdrbs2	98	77.143	Lepisosteus_oculatus
ENSRNOG00000012284	Khdrbs2	100	95.702	ENSLAFG00000006655	KHDRBS2	100	95.702	Loxodonta_africana
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSMFAG00000002823	KHDRBS2	100	95.989	Macaca_fascicularis
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSMNEG00000042875	KHDRBS2	100	95.989	Macaca_nemestrina
ENSRNOG00000012284	Khdrbs2	77	96.296	ENSMLEG00000022013	KHDRBS2	100	96.296	Mandrillus_leucophaeus
ENSRNOG00000012284	Khdrbs2	100	67.236	ENSMAMG00000015552	khdrbs2	100	67.143	Mastacembelus_armatus
ENSRNOG00000012284	Khdrbs2	100	68.466	ENSMZEG00005005504	khdrbs2	100	67.045	Maylandia_zebra
ENSRNOG00000012284	Khdrbs2	56	97.462	ENSMAUG00000013631	Khdrbs2	72	97.462	Mesocricetus_auratus
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSMICG00000010315	KHDRBS2	100	95.415	Microcebus_murinus
ENSRNOG00000012284	Khdrbs2	100	96.848	ENSMOCG00000012101	Khdrbs2	100	96.848	Microtus_ochrogaster
ENSRNOG00000012284	Khdrbs2	100	66.667	ENSMMOG00000007708	khdrbs2	100	65.341	Mola_mola
ENSRNOG00000012284	Khdrbs2	100	91.691	ENSMODG00000018714	KHDRBS2	100	91.691	Monodelphis_domestica
ENSRNOG00000012284	Khdrbs2	100	66.193	ENSMALG00000002214	khdrbs2	100	64.489	Monopterus_albus
ENSRNOG00000012284	Khdrbs2	100	97.708	MGP_CAROLIEiJ_G0014010	Khdrbs2	100	97.708	Mus_caroli
ENSRNOG00000012284	Khdrbs2	100	98.281	ENSMUSG00000026058	Khdrbs2	100	98.281	Mus_musculus
ENSRNOG00000012284	Khdrbs2	100	97.994	MGP_PahariEiJ_G0027259	Khdrbs2	100	97.994	Mus_pahari
ENSRNOG00000012284	Khdrbs2	100	98.281	MGP_SPRETEiJ_G0014814	Khdrbs2	100	98.281	Mus_spretus
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSMPUG00000002607	KHDRBS2	100	95.415	Mustela_putorius_furo
ENSRNOG00000012284	Khdrbs2	100	94.842	ENSMLUG00000005484	KHDRBS2	100	94.842	Myotis_lucifugus
ENSRNOG00000012284	Khdrbs2	100	69.034	ENSNBRG00000013759	khdrbs2	100	67.614	Neolamprologus_brichardi
ENSRNOG00000012284	Khdrbs2	91	91.824	ENSODEG00000015927	KHDRBS2	100	91.824	Octodon_degus
ENSRNOG00000012284	Khdrbs2	100	69.122	ENSONIG00000009755	khdrbs2	100	67.330	Oreochromis_niloticus
ENSRNOG00000012284	Khdrbs2	100	95.129	ENSOCUG00000012344	KHDRBS2	100	95.129	Oryctolagus_cuniculus
ENSRNOG00000012284	Khdrbs2	100	68.091	ENSORLG00000010165	khdrbs2	100	66.382	Oryzias_latipes
ENSRNOG00000012284	Khdrbs2	100	67.806	ENSORLG00020020168	khdrbs2	100	66.097	Oryzias_latipes_hni
ENSRNOG00000012284	Khdrbs2	100	67.806	ENSORLG00015003971	khdrbs2	100	66.097	Oryzias_latipes_hsok
ENSRNOG00000012284	Khdrbs2	100	67.521	ENSOMEG00000001684	khdrbs2	100	65.812	Oryzias_melastigma
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSOGAG00000015071	KHDRBS2	100	95.415	Otolemur_garnettii
ENSRNOG00000012284	Khdrbs2	95	87.870	ENSOARG00000005603	KHDRBS2	97	87.870	Ovis_aries
ENSRNOG00000012284	Khdrbs2	100	95.129	ENSPPAG00000032651	KHDRBS2	100	95.129	Pan_paniscus
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSPPRG00000008147	KHDRBS2	100	95.989	Panthera_pardus
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSPTIG00000020547	KHDRBS2	100	95.989	Panthera_tigris_altaica
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSPTRG00000018311	KHDRBS2	100	95.415	Pan_troglodytes
ENSRNOG00000012284	Khdrbs2	100	95.989	ENSPANG00000021881	KHDRBS2	100	95.989	Papio_anubis
ENSRNOG00000012284	Khdrbs2	100	68.376	ENSPMGG00000008580	khdrbs2	100	65.812	Periophthalmus_magnuspinnatus
ENSRNOG00000012284	Khdrbs2	100	68.466	ENSPFOG00000011638	khdrbs2	100	66.382	Poecilia_formosa
ENSRNOG00000012284	Khdrbs2	100	67.521	ENSPLAG00000023478	khdrbs2	100	65.242	Poecilia_latipinna
ENSRNOG00000012284	Khdrbs2	100	68.091	ENSPMEG00000011563	khdrbs2	100	65.812	Poecilia_mexicana
ENSRNOG00000012284	Khdrbs2	100	68.466	ENSPREG00000022525	khdrbs2	100	66.382	Poecilia_reticulata
ENSRNOG00000012284	Khdrbs2	58	98.039	ENSPPYG00000029598	-	97	98.039	Pongo_abelii
ENSRNOG00000012284	Khdrbs2	100	82.808	ENSPCAG00000001426	KHDRBS2	100	82.808	Procavia_capensis
ENSRNOG00000012284	Khdrbs2	100	82.808	ENSPCOG00000018881	KHDRBS2	100	82.808	Propithecus_coquereli
ENSRNOG00000012284	Khdrbs2	100	69.034	ENSPNYG00000019550	khdrbs2	100	67.614	Pundamilia_nyererei
ENSRNOG00000012284	Khdrbs2	99	76.724	ENSPNAG00000008598	khdrbs2	99	74.713	Pygocentrus_nattereri
ENSRNOG00000012284	Khdrbs2	91	95.253	ENSRBIG00000039774	KHDRBS2	99	95.253	Rhinopithecus_bieti
ENSRNOG00000012284	Khdrbs2	100	95.702	ENSSBOG00000019779	KHDRBS2	100	95.702	Saimiri_boliviensis_boliviensis
ENSRNOG00000012284	Khdrbs2	100	76.857	ENSSFOG00015012491	khdrbs2	100	74.286	Scleropages_formosus
ENSRNOG00000012284	Khdrbs2	99	67.139	ENSSMAG00000006422	khdrbs2	89	65.722	Scophthalmus_maximus
ENSRNOG00000012284	Khdrbs2	100	69.801	ENSSDUG00000023520	khdrbs2	100	68.091	Seriola_dumerili
ENSRNOG00000012284	Khdrbs2	99	69.143	ENSSLDG00000019363	khdrbs2	98	67.429	Seriola_lalandi_dorsalis
ENSRNOG00000012284	Khdrbs2	100	73.639	ENSSARG00000004121	KHDRBS2	100	73.639	Sorex_araneus
ENSRNOG00000012284	Khdrbs2	70	90.947	ENSSPUG00000006155	KHDRBS2	71	90.265	Sphenodon_punctatus
ENSRNOG00000012284	Khdrbs2	100	94.842	ENSSSCG00000001490	KHDRBS2	100	94.842	Sus_scrofa
ENSRNOG00000012284	Khdrbs2	69	90.000	ENSTGUG00000012786	KHDRBS2	93	89.686	Taeniopygia_guttata
ENSRNOG00000012284	Khdrbs2	100	63.661	ENSTRUG00000015760	khdrbs2	100	63.483	Takifugu_rubripes
ENSRNOG00000012284	Khdrbs2	100	93.410	ENSTTRG00000005591	KHDRBS2	100	93.410	Tursiops_truncatus
ENSRNOG00000012284	Khdrbs2	100	95.415	ENSUMAG00000018593	KHDRBS2	100	95.415	Ursus_maritimus
ENSRNOG00000012284	Khdrbs2	91	93.060	ENSVPAG00000001469	KHDRBS2	100	93.060	Vicugna_pacos
ENSRNOG00000012284	Khdrbs2	100	94.842	ENSVVUG00000008652	KHDRBS2	100	94.842	Vulpes_vulpes
ENSRNOG00000012284	Khdrbs2	100	75.645	ENSXETG00000004451	khdrbs2	100	72.493	Xenopus_tropicalis
ENSRNOG00000012284	Khdrbs2	100	68.376	ENSXMAG00000009415	khdrbs2	100	65.527	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005515	protein binding	19282290.	IPI	Function
GO:0005634	nucleus	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008143	poly(A) binding	-	IEA	Function
GO:0008143	poly(A) binding	-	ISO	Function
GO:0008266	poly(U) RNA binding	-	IEA	Function
GO:0008266	poly(U) RNA binding	-	ISO	Function
GO:0017124	SH3 domain binding	-	IEA	Function
GO:0017124	SH3 domain binding	-	ISO	Function
GO:0042169	SH2 domain binding	-	IEA	Function
GO:0042169	SH2 domain binding	-	ISO	Function
GO:0042802	identical protein binding	-	IEA	Function
GO:0042802	identical protein binding	-	ISO	Function
GO:0046982	protein heterodimerization activity	-	IEA	Function
GO:0046982	protein heterodimerization activity	-	ISO	Function
GO:0048024	regulation of mRNA splicing, via spliceosome	-	IEA	Process
GO:0048024	regulation of mRNA splicing, via spliceosome	-	ISO	Process