EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000012303 (Gene tree)
Gene ID
301226
Gene Symbol
Apobec2
Alias
LOC301226
Full Name
apolipoprotein B mRNA editing enzyme catalytic subunit 2
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
13514 bases
Position
chr9:14529218-14542731
Accession
1308727
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000016893APOBEC_NPF08210.111.6e-5111
ENSRNOP00000016893APOBEC_CPF05240.142.6e-2511
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000016893-1198-ENSRNOP00000016893224 (aa)-B4F789
Gene Model
Click here to download ENSRNOG00000012303's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012303's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000012303Apobec27734.483ENSRNOG00000015478Aicda8634.483
ENSRNOG00000012303Apobec27733.333ENSRNOG00000016852Apobec38633.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000012303Apobec210091.518ENSG00000124701APOBEC210091.518Homo_sapiens
ENSRNOG00000012303Apobec28557.592ENSAPOG00000019390apobec2b6957.592Acanthochromis_polyacanthus
ENSRNOG00000012303Apobec28086.592ENSAMEG00000004467APOBEC27681.771Ailuropoda_melanoleuca
ENSRNOG00000012303Apobec28559.162ENSACIG00000002472APOBEC27759.162Amphilophus_citrinellus
ENSRNOG00000012303Apobec28555.729ENSACIG00000016370apobec2a7255.729Amphilophus_citrinellus
ENSRNOG00000012303Apobec28558.115ENSAOCG00000023355apobec2b6958.115Amphiprion_ocellaris
ENSRNOG00000012303Apobec29754.091ENSAOCG00000003291apobec2a7757.216Amphiprion_ocellaris
ENSRNOG00000012303Apobec29754.338ENSAPEG00000003630apobec2a7757.216Amphiprion_percula
ENSRNOG00000012303Apobec28558.115ENSAPEG00000004591apobec2b6958.115Amphiprion_percula
ENSRNOG00000012303Apobec28557.592ENSATEG00000023043APOBEC26857.592Anabas_testudineus
ENSRNOG00000012303Apobec29656.019ENSATEG00000000956apobec2a9461.494Anabas_testudineus
ENSRNOG00000012303Apobec28478.947ENSAPLG00000002895APOBEC29374.178Anas_platyrhynchos
ENSRNOG00000012303Apobec28569.110ENSACAG00000016506APOBEC29473.184Anolis_carolinensis
ENSRNOG00000012303Apobec210091.518ENSANAG00000026993APOBEC210091.518Aotus_nancymaae
ENSRNOG00000012303Apobec28559.162ENSACLG00000007634APOBEC26959.162Astatotilapia_calliptera
ENSRNOG00000012303Apobec27952.514ENSACLG00000026736-9652.514Astatotilapia_calliptera
ENSRNOG00000012303Apobec29858.904ENSAMXG00000015966apobec2b7160.396Astyanax_mexicanus
ENSRNOG00000012303Apobec29052.427ENSAMXG00000042992apobec2a7754.369Astyanax_mexicanus
ENSRNOG00000012303Apobec210088.393ENSBTAG00000005974APOBEC27288.393Bos_taurus
ENSRNOG00000012303Apobec210092.411ENSCJAG00000004063APOBEC210092.411Callithrix_jacchus
ENSRNOG00000012303Apobec210091.518ENSCAFG00000001575APOBEC210091.518Canis_familiaris
ENSRNOG00000012303Apobec210091.964ENSCAFG00020008306APOBEC210091.964Canis_lupus_dingo
ENSRNOG00000012303Apobec210090.179ENSCHIG00000026348APOBEC210090.179Capra_hircus
ENSRNOG00000012303Apobec29492.381ENSTSYG00000008206APOBEC29392.381Carlito_syrichta
ENSRNOG00000012303Apobec29489.100ENSCAPG00000015084APOBEC29389.100Cavia_aperea
ENSRNOG00000012303Apobec29489.100ENSCPOG00000036103APOBEC29389.100Cavia_porcellus
ENSRNOG00000012303Apobec210091.964ENSCCAG00000033987APOBEC210091.964Cebus_capucinus
ENSRNOG00000012303Apobec210089.732ENSCATG00000010691APOBEC210089.732Cercocebus_atys
ENSRNOG00000012303Apobec210087.719ENSCLAG00000013817APOBEC29389.573Chinchilla_lanigera
ENSRNOG00000012303Apobec210091.518ENSCSAG00000011177APOBEC210091.518Chlorocebus_sabaeus
ENSRNOG00000012303Apobec28093.296ENSCHOG00000008930APOBEC29993.296Choloepus_hoffmanni
ENSRNOG00000012303Apobec28378.610ENSCPBG00000017469APOBEC29574.882Chrysemys_picta_bellii
ENSRNOG00000012303Apobec210091.071ENSCANG00000035072APOBEC210091.071Colobus_angolensis_palliatus
ENSRNOG00000012303Apobec210095.982ENSCGRG00001014983Apobec210095.982Cricetulus_griseus_chok1gshd
ENSRNOG00000012303Apobec210095.982ENSCGRG00000007835Apobec210095.982Cricetulus_griseus_crigri
ENSRNOG00000012303Apobec29654.167ENSCSEG00000020201apobec2a8055.288Cynoglossus_semilaevis
ENSRNOG00000012303Apobec28556.021ENSCSEG00000000690-6956.021Cynoglossus_semilaevis
ENSRNOG00000012303Apobec29258.454ENSCVAG00000012342apobec2b7558.454Cyprinodon_variegatus
ENSRNOG00000012303Apobec28661.140ENSDARG00000018881apobec2a7658.852Danio_rerio
ENSRNOG00000012303Apobec29356.604ENSDARG00000113992apobec2b7756.604Danio_rerio
ENSRNOG00000012303Apobec210064.629ENSDNOG00000033914APOBEC210064.629Dasypus_novemcinctus
ENSRNOG00000012303Apobec210089.083ENSDORG00000006447Apobec29290.995Dipodomys_ordii
ENSRNOG00000012303Apobec29487.678ENSETEG00000000624APOBEC29287.678Echinops_telfairi
ENSRNOG00000012303Apobec28690.625ENSEASG00005002937APOBEC210090.625Equus_asinus_asinus
ENSRNOG00000012303Apobec210091.518ENSECAG00000006576APOBEC210091.518Equus_caballus
ENSRNOG00000012303Apobec210085.714ENSEEUG00000006046APOBEC210085.714Erinaceus_europaeus
ENSRNOG00000012303Apobec28655.440ENSELUG00000003736apobec2a6953.960Esox_lucius
ENSRNOG00000012303Apobec210089.732ENSFCAG00000004108APOBEC210089.732Felis_catus
ENSRNOG00000012303Apobec29958.407ENSFALG00000003910APOBEC29459.906Ficedula_albicollis
ENSRNOG00000012303Apobec210088.889ENSFDAG00000006015APOBEC210088.889Fukomys_damarensis
ENSRNOG00000012303Apobec28562.304ENSFHEG00000005492apobec2b7962.304Fundulus_heteroclitus
ENSRNOG00000012303Apobec27763.584ENSGMOG00000007028apobec2a9663.584Gadus_morhua
ENSRNOG00000012303Apobec28555.497ENSGMOG00000006819apobec2b7655.497Gadus_morhua
ENSRNOG00000012303Apobec28578.010ENSGALG00000003226APOBEC29573.364Gallus_gallus
ENSRNOG00000012303Apobec28561.257ENSGAFG00000007634apobec2b6061.257Gambusia_affinis
ENSRNOG00000012303Apobec28656.995ENSGACG00000009663apobec2b8356.995Gasterosteus_aculeatus
ENSRNOG00000012303Apobec28656.477ENSGACG00000011671apobec2a10056.477Gasterosteus_aculeatus
ENSRNOG00000012303Apobec28378.075ENSGAGG00000010347APOBEC29574.057Gopherus_agassizii
ENSRNOG00000012303Apobec29492.857ENSGGOG00000001099APOBEC29192.857Gorilla_gorilla
ENSRNOG00000012303Apobec28559.162ENSHBUG00000005993apobec2b6959.162Haplochromis_burtoni
ENSRNOG00000012303Apobec29754.795ENSHBUG00000015890apobec2a7558.031Haplochromis_burtoni
ENSRNOG00000012303Apobec29488.152ENSHGLG00000017169APOBEC29388.152Heterocephalus_glaber_female
ENSRNOG00000012303Apobec29488.152ENSHGLG00100019442APOBEC29388.152Heterocephalus_glaber_male
ENSRNOG00000012303Apobec29951.121ENSHCOG00000020319apobec2a7855.779Hippocampus_comes
ENSRNOG00000012303Apobec28659.067ENSHCOG00000002712APOBEC27159.067Hippocampus_comes
ENSRNOG00000012303Apobec29653.425ENSIPUG00000017355apobec2a5954.502Ictalurus_punctatus
ENSRNOG00000012303Apobec28959.500ENSIPUG00000013784Apobec27459.500Ictalurus_punctatus
ENSRNOG00000012303Apobec210090.625ENSSTOG00000023643APOBEC210090.625Ictidomys_tridecemlineatus
ENSRNOG00000012303Apobec210089.286ENSJJAG00000009733Apobec210089.286Jaculus_jaculus
ENSRNOG00000012303Apobec28558.947ENSKMAG00000020631apobec2b6958.947Kryptolebias_marmoratus
ENSRNOG00000012303Apobec29853.394ENSLBEG00000025214apobec2a8256.158Labrus_bergylta
ENSRNOG00000012303Apobec29852.511ENSLBEG00000009422-6657.592Labrus_bergylta
ENSRNOG00000012303Apobec28966.000ENSLACG00000015985APOBEC28566.000Latimeria_chalumnae
ENSRNOG00000012303Apobec29059.701ENSLOCG00000012415apobec2b7159.701Lepisosteus_oculatus
ENSRNOG00000012303Apobec29591.509ENSLAFG00000016563APOBEC210091.071Loxodonta_africana
ENSRNOG00000012303Apobec210091.518ENSMFAG00000044645APOBEC210091.518Macaca_fascicularis
ENSRNOG00000012303Apobec210091.518ENSMMUG00000021171APOBEC210091.518Macaca_mulatta
ENSRNOG00000012303Apobec210091.518ENSMNEG00000045497APOBEC210091.518Macaca_nemestrina
ENSRNOG00000012303Apobec210091.518ENSMLEG00000028328APOBEC210091.518Mandrillus_leucophaeus
ENSRNOG00000012303Apobec29955.405ENSMAMG00000023685apobec2a7459.585Mastacembelus_armatus
ENSRNOG00000012303Apobec28559.686ENSMAMG00000007926APOBEC26859.686Mastacembelus_armatus
ENSRNOG00000012303Apobec29754.338ENSMZEG00005005240-9156.364Maylandia_zebra
ENSRNOG00000012303Apobec28558.639ENSMZEG00005027159APOBEC26958.639Maylandia_zebra
ENSRNOG00000012303Apobec28578.010ENSMGAG00000010173APOBEC29377.222Meleagris_gallopavo
ENSRNOG00000012303Apobec210095.089ENSMAUG00000011016Apobec210095.089Mesocricetus_auratus
ENSRNOG00000012303Apobec210091.071ENSMICG00000043339APOBEC210091.071Microcebus_murinus
ENSRNOG00000012303Apobec210095.982ENSMOCG00000001904Apobec210095.982Microtus_ochrogaster
ENSRNOG00000012303Apobec25245.690ENSMMOG00000009531-6546.018Mola_mola
ENSRNOG00000012303Apobec29354.327ENSMMOG00000008681apobec2b7654.327Mola_mola
ENSRNOG00000012303Apobec29982.960ENSMODG00000013090APOBEC29585.167Monodelphis_domestica
ENSRNOG00000012303Apobec28658.247ENSMALG00000020523apobec2a7658.247Monopterus_albus
ENSRNOG00000012303Apobec28557.592ENSMALG00000013779APOBEC27257.592Monopterus_albus
ENSRNOG00000012303Apobec210098.661MGP_CAROLIEiJ_G0021727Apobec210098.661Mus_caroli
ENSRNOG00000012303Apobec210098.661ENSMUSG00000040694Apobec210098.661Mus_musculus
ENSRNOG00000012303Apobec210099.107MGP_PahariEiJ_G0020716Apobec210099.107Mus_pahari
ENSRNOG00000012303Apobec29490.047ENSMPUG00000013691APOBEC29090.476Mustela_putorius_furo
ENSRNOG00000012303Apobec29688.785ENSMLUG00000011327APOBEC29189.048Myotis_lucifugus
ENSRNOG00000012303Apobec210094.643ENSNGAG00000013717Apobec210094.643Nannospalax_galili
ENSRNOG00000012303Apobec28558.639ENSNBRG00000018806apobec2b6158.639Neolamprologus_brichardi
ENSRNOG00000012303Apobec28657.812ENSNBRG00000021776apobec2a7557.812Neolamprologus_brichardi
ENSRNOG00000012303Apobec210091.518ENSNLEG00000005057APOBEC210091.518Nomascus_leucogenys
ENSRNOG00000012303Apobec29983.857ENSMEUG00000011623APOBEC29586.124Notamacropus_eugenii
ENSRNOG00000012303Apobec210087.719ENSOPRG00000014808APOBEC210089.035Ochotona_princeps
ENSRNOG00000012303Apobec29489.100ENSODEG00000016183APOBEC29289.100Octodon_degus
ENSRNOG00000012303Apobec28559.162ENSONIG00000012289apobec2b6959.162Oreochromis_niloticus
ENSRNOG00000012303Apobec29755.708ENSONIG00000004644-7559.585Oreochromis_niloticus
ENSRNOG00000012303Apobec27584.024ENSOANG00000000824APOBEC29880.110Ornithorhynchus_anatinus
ENSRNOG00000012303Apobec210089.868ENSOCUG00000028008APOBEC210089.868Oryctolagus_cuniculus
ENSRNOG00000012303Apobec29853.182ENSORLG00000022372APOBEC26957.592Oryzias_latipes
ENSRNOG00000012303Apobec29453.333ENSORLG00000010752apobec2a8454.680Oryzias_latipes
ENSRNOG00000012303Apobec29853.636ENSORLG00020006164APOBEC26958.115Oryzias_latipes_hni
ENSRNOG00000012303Apobec29453.333ENSORLG00020004153apobec2a8454.680Oryzias_latipes_hni
ENSRNOG00000012303Apobec29854.091ENSORLG00015022089-6958.639Oryzias_latipes_hsok
ENSRNOG00000012303Apobec29453.333ENSORLG00015021781apobec2a8454.680Oryzias_latipes_hsok
ENSRNOG00000012303Apobec28559.162ENSOMEG00000015449APOBEC27659.162Oryzias_melastigma
ENSRNOG00000012303Apobec29155.172ENSOMEG00000001311apobec2a8355.172Oryzias_melastigma
ENSRNOG00000012303Apobec210091.964ENSOGAG00000002632APOBEC210091.964Otolemur_garnettii
ENSRNOG00000012303Apobec210089.732ENSOARG00000000820APOBEC210089.732Ovis_aries
ENSRNOG00000012303Apobec29492.381ENSPPAG00000035598APOBEC29192.381Pan_paniscus
ENSRNOG00000012303Apobec210089.732ENSPPRG00000008530APOBEC210089.732Panthera_pardus
ENSRNOG00000012303Apobec29489.573ENSPTIG00000011084APOBEC29490.000Panthera_tigris_altaica
ENSRNOG00000012303Apobec29492.857ENSPTRG00000029679APOBEC29192.857Pan_troglodytes
ENSRNOG00000012303Apobec210091.518ENSPANG00000007121APOBEC210091.518Papio_anubis
ENSRNOG00000012303Apobec28662.694ENSPKIG00000004741apobec2b6862.694Paramormyrops_kingsleyae
ENSRNOG00000012303Apobec29954.936ENSPKIG00000005395apobec2a7958.500Paramormyrops_kingsleyae
ENSRNOG00000012303Apobec28378.075ENSPSIG00000013480APOBEC29770.404Pelodiscus_sinensis
ENSRNOG00000012303Apobec28557.068ENSPMGG00000002686APOBEC25557.068Periophthalmus_magnuspinnatus
ENSRNOG00000012303Apobec29956.757ENSPMGG00000004044apobec2a8158.852Periophthalmus_magnuspinnatus
ENSRNOG00000012303Apobec29496.190ENSPEMG00000005724Apobec210095.982Peromyscus_maniculatus_bairdii
ENSRNOG00000012303Apobec28561.257ENSPFOG00000001216apobec2b6961.257Poecilia_formosa
ENSRNOG00000012303Apobec28561.257ENSPLAG00000002074apobec2b7661.257Poecilia_latipinna
ENSRNOG00000012303Apobec28561.257ENSPMEG00000017537apobec2b6961.257Poecilia_mexicana
ENSRNOG00000012303Apobec28559.686ENSPREG00000020060apobec2b6059.686Poecilia_reticulata
ENSRNOG00000012303Apobec210090.625ENSPPYG00000016586APOBEC210090.625Pongo_abelii
ENSRNOG00000012303Apobec28591.099ENSPCAG00000011433APOBEC210091.099Procavia_capensis
ENSRNOG00000012303Apobec210093.304ENSPCOG00000026935APOBEC210093.304Propithecus_coquereli
ENSRNOG00000012303Apobec210088.393ENSPVAG00000008316APOBEC210088.393Pteropus_vampyrus
ENSRNOG00000012303Apobec28559.162ENSPNYG00000016747apobec2b6959.162Pundamilia_nyererei
ENSRNOG00000012303Apobec28961.500ENSPNAG00000013666apobec2b7559.434Pygocentrus_nattereri
ENSRNOG00000012303Apobec28656.477ENSPNAG00000010382apobec2a7156.477Pygocentrus_nattereri
ENSRNOG00000012303Apobec210091.518ENSRBIG00000044756APOBEC210091.518Rhinopithecus_bieti
ENSRNOG00000012303Apobec210091.071ENSRROG00000030082APOBEC210091.071Rhinopithecus_roxellana
ENSRNOG00000012303Apobec210091.518ENSSBOG00000028496APOBEC210091.518Saimiri_boliviensis_boliviensis
ENSRNOG00000012303Apobec29383.732ENSSHAG00000017771APOBEC29483.732Sarcophilus_harrisii
ENSRNOG00000012303Apobec29857.273ENSSFOG00015022920apobec26862.176Scleropages_formosus
ENSRNOG00000012303Apobec27749.711ENSSFOG00015005437-7149.711Scleropages_formosus
ENSRNOG00000012303Apobec29655.556ENSSMAG00000001011apobec2a5659.067Scophthalmus_maximus
ENSRNOG00000012303Apobec28559.162ENSSMAG00000005110APOBEC27355.714Scophthalmus_maximus
ENSRNOG00000012303Apobec29456.604ENSSDUG00000007013apobec2a8156.938Seriola_dumerili
ENSRNOG00000012303Apobec29952.703ENSSDUG00000014543apobec2b6957.513Seriola_dumerili
ENSRNOG00000012303Apobec29952.703ENSSLDG00000003321apobec2b6957.513Seriola_lalandi_dorsalis
ENSRNOG00000012303Apobec29655.607ENSSLDG00000020199apobec2a8156.731Seriola_lalandi_dorsalis
ENSRNOG00000012303Apobec28965.217ENSSPUG00000010839APOBEC29966.667Sphenodon_punctatus
ENSRNOG00000012303Apobec28558.639ENSSPAG00000005253apobec2b6958.639Stegastes_partitus
ENSRNOG00000012303Apobec29953.812ENSSPAG00000016299-7756.477Stegastes_partitus
ENSRNOG00000012303Apobec210090.179ENSSSCG00000036018APOBEC210090.179Sus_scrofa
ENSRNOG00000012303Apobec29968.142ENSTGUG00000018533APOBEC29570.283Taeniopygia_guttata
ENSRNOG00000012303Apobec28559.162ENSTRUG00000012839apobec2b7059.162Takifugu_rubripes
ENSRNOG00000012303Apobec29454.028ENSTRUG00000009123apobec2a7656.995Takifugu_rubripes
ENSRNOG00000012303Apobec28558.115ENSTNIG00000015038apobec2b7058.115Tetraodon_nigroviridis
ENSRNOG00000012303Apobec210092.411ENSTBEG00000003553APOBEC210092.411Tupaia_belangeri
ENSRNOG00000012303Apobec210087.054ENSTTRG00000013392APOBEC210087.054Tursiops_truncatus
ENSRNOG00000012303Apobec210082.895ENSUAMG00000027667APOBEC29285.714Ursus_americanus
ENSRNOG00000012303Apobec25984.559ENSUMAG00000012252APOBEC27789.831Ursus_maritimus
ENSRNOG00000012303Apobec25594.937ENSVPAG00000008024APOBEC25594.937Vicugna_pacos
ENSRNOG00000012303Apobec29491.429ENSVVUG00000026617APOBEC210091.518Vulpes_vulpes
ENSRNOG00000012303Apobec210049.580ENSXETG00000008007apobec29252.511Xenopus_tropicalis
ENSRNOG00000012303Apobec29059.406ENSXCOG00000007398apobec2b7759.406Xiphophorus_couchianus
ENSRNOG00000012303Apobec28560.733ENSXMAG00000008134apobec2b6860.733Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0003723RNA binding21873635.IBAFunction
GO:0004126cytidine deaminase activity21873635.IBAFunction
GO:0004126cytidine deaminase activity-ISOFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0009972cytidine deamination-IEAProcess
GO:0016554cytidine to uridine editing21873635.IBAProcess
GO:0016554cytidine to uridine editing-ISOProcess
GO:0016556mRNA modification-IEAProcess
GO:0016556mRNA modification-ISOProcess
GO:0042802identical protein binding-IEAFunction
GO:0042802identical protein binding-ISOFunction
GO:0080111DNA demethylation21873635.IBAProcess
GO:0080111DNA demethylation-ISOProcess

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