EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012314 (Gene tree)
Gene ID: 688717
Gene Symbol: Slirp
Alias: LOC688717
Full Name: SRA stem-loop interacting RNA binding protein
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 9272 bases
Position: chr6:111476768-111486039
Accession: 1585290
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000016479	RRM_1	PF00076.22	3.9e-14	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000016479	-	2817	-	ENSRNOP00000016479	111 (aa)	-	D4A4W6

Gene Model

Click here to download ENSRNOG00000012314's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012314's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012314	Slirp	74	30.769	ENSRNOG00000003645	LOC103689931	51	30.769
ENSRNOG00000012314	Slirp	74	30.769	ENSRNOG00000046272	Hnrnpab	51	30.769

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012314	Slirp	90	80.000	ENSBTAG00000008135	SLIRP	100	78.378	Bos_taurus
ENSRNOG00000012314	Slirp	91	74.257	ENSBTAG00000050457	-	99	74.257	Bos_taurus
ENSRNOG00000012314	Slirp	90	80.000	ENSCAFG00000017230	SLIRP	100	78.378	Canis_familiaris
ENSRNOG00000012314	Slirp	90	80.000	ENSCAFG00020000852	-	100	78.378	Canis_lupus_dingo
ENSRNOG00000012314	Slirp	100	79.279	ENSCHIG00000019077	-	100	79.279	Capra_hircus
ENSRNOG00000012314	Slirp	100	74.775	ENSCHIG00000002964	-	100	74.775	Capra_hircus
ENSRNOG00000012314	Slirp	100	72.973	ENSCPOG00000001500	-	100	72.973	Cavia_porcellus
ENSRNOG00000012314	Slirp	100	71.171	ENSCLAG00000008545	-	100	71.171	Chinchilla_lanigera
ENSRNOG00000012314	Slirp	80	59.551	ENSDNOG00000041397	-	81	59.551	Dasypus_novemcinctus
ENSRNOG00000012314	Slirp	100	80.180	ENSECAG00000000712	SLIRP	100	80.180	Equus_caballus
ENSRNOG00000012314	Slirp	89	78.788	ENSJJAG00000018723	-	100	77.477	Jaculus_jaculus
ENSRNOG00000012314	Slirp	100	91.892	MGP_PahariEiJ_G0029754	-	100	91.892	Mus_pahari
ENSRNOG00000012314	Slirp	90	75.000	ENSMLUG00000022403	-	100	72.973	Myotis_lucifugus
ENSRNOG00000012314	Slirp	100	76.577	ENSOPRG00000007560	-	100	76.577	Ochotona_princeps
ENSRNOG00000012314	Slirp	100	78.378	ENSOCUG00000009713	-	100	78.378	Oryctolagus_cuniculus
ENSRNOG00000012314	Slirp	90	65.000	ENSOGAG00000027580	-	99	63.964	Otolemur_garnettii
ENSRNOG00000012314	Slirp	100	66.667	ENSOARG00000016139	-	100	66.667	Ovis_aries
ENSRNOG00000012314	Slirp	90	81.000	ENSOARG00000002642	SLIRP	100	79.279	Ovis_aries
ENSRNOG00000012314	Slirp	86	62.500	ENSPCAG00000004290	-	100	61.261	Procavia_capensis
ENSRNOG00000012314	Slirp	70	71.795	ENSPVAG00000006420	-	70	71.795	Pteropus_vampyrus
ENSRNOG00000012314	Slirp	100	77.477	ENSTBEG00000013979	-	100	77.477	Tupaia_belangeri
ENSRNOG00000012314	Slirp	70	80.769	ENSTTRG00000009328	-	100	63.964	Tursiops_truncatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000961	negative regulation of mitochondrial RNA catabolic process	21873635.	IBA	Process
GO:0000961	negative regulation of mitochondrial RNA catabolic process	-	ISO	Process
GO:0001669	acrosomal vesicle	-	ISO	Component
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0005737	cytoplasm	-	ISO	Component
GO:0005739	mitochondrion	21873635.	IBA	Component
GO:0005739	mitochondrion	-	ISO	Component
GO:0007286	spermatid development	-	ISO	Process
GO:0007338	single fertilization	-	ISO	Process
GO:0030317	flagellated sperm motility	-	ISO	Process
GO:0036126	sperm flagellum	-	ISO	Component
GO:0048471	perinuclear region of cytoplasm	-	ISO	Component
GO:0070584	mitochondrion morphogenesis	21873635.	IBA	Process
GO:0070584	mitochondrion morphogenesis	-	ISO	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component