EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012438 (Gene tree)
Gene ID: 315731
Gene Symbol: Larp6
Alias: LOC315731|RGD1308414
Full Name: La ribonucleoprotein domain family%2C member 6
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 21137 bases
Position: chr8:65611570-65632706
Accession: 1308414
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017147	La	PF05383.17	1.1e-20	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017147	-	2336	-	ENSRNOP00000017147	492 (aa)	-	D3ZCR5

Gene Model

Click here to download ENSRNOG00000012438's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012438's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012438	Larp6	100	89.634	ENSG00000166173	LARP6	100	90.323	Homo_sapiens
ENSRNOG00000012438	Larp6	95	57.526	ENSAPOG00000021773	larp6a	63	59.326	Acanthochromis_polyacanthus
ENSRNOG00000012438	Larp6	87	91.121	ENSAMEG00000008897	LARP6	100	91.121	Ailuropoda_melanoleuca
ENSRNOG00000012438	Larp6	97	58.012	ENSACIG00000005166	larp6a	93	56.389	Amphilophus_citrinellus
ENSRNOG00000012438	Larp6	95	57.526	ENSAOCG00000002284	larp6a	63	59.326	Amphiprion_ocellaris
ENSRNOG00000012438	Larp6	95	57.526	ENSAPEG00000008077	larp6a	84	59.326	Amphiprion_percula
ENSRNOG00000012438	Larp6	95	57.290	ENSATEG00000004018	larp6a	62	58.613	Anabas_testudineus
ENSRNOG00000012438	Larp6	85	70.686	ENSAPLG00000009914	LARP6	99	70.686	Anas_platyrhynchos
ENSRNOG00000012438	Larp6	84	68.029	ENSACAG00000008613	LARP6	98	68.029	Anolis_carolinensis
ENSRNOG00000012438	Larp6	100	89.837	ENSANAG00000024860	LARP6	100	89.837	Aotus_nancymaae
ENSRNOG00000012438	Larp6	97	57.980	ENSACLG00000018561	larp6a	62	58.462	Astatotilapia_calliptera
ENSRNOG00000012438	Larp6	85	42.105	ENSAMXG00000036816	-	93	42.029	Astyanax_mexicanus
ENSRNOG00000012438	Larp6	97	56.338	ENSAMXG00000029387	larp6a	68	58.553	Astyanax_mexicanus
ENSRNOG00000012438	Larp6	100	88.008	ENSBTAG00000003915	LARP6	100	88.008	Bos_taurus
ENSRNOG00000012438	Larp6	100	89.228	ENSCJAG00000046236	-	100	89.228	Callithrix_jacchus
ENSRNOG00000012438	Larp6	100	89.634	ENSCJAG00000018642	-	100	89.634	Callithrix_jacchus
ENSRNOG00000012438	Larp6	86	92.925	ENSCAFG00000017616	LARP6	99	92.925	Canis_familiaris
ENSRNOG00000012438	Larp6	100	90.041	ENSCAFG00020007296	LARP6	100	90.041	Canis_lupus_dingo
ENSRNOG00000012438	Larp6	100	88.211	ENSCHIG00000013742	LARP6	100	88.211	Capra_hircus
ENSRNOG00000012438	Larp6	86	90.802	ENSTSYG00000028124	LARP6	87	90.802	Carlito_syrichta
ENSRNOG00000012438	Larp6	86	88.706	ENSCAPG00000015452	LARP6	100	88.706	Cavia_aperea
ENSRNOG00000012438	Larp6	100	86.613	ENSCPOG00000022687	LARP6	100	86.613	Cavia_porcellus
ENSRNOG00000012438	Larp6	100	89.431	ENSCCAG00000036320	LARP6	100	89.431	Cebus_capucinus
ENSRNOG00000012438	Larp6	100	89.634	ENSCATG00000042432	LARP6	100	89.634	Cercocebus_atys
ENSRNOG00000012438	Larp6	100	89.655	ENSCLAG00000007893	LARP6	100	89.655	Chinchilla_lanigera
ENSRNOG00000012438	Larp6	100	90.041	ENSCSAG00000013672	LARP6	100	90.041	Chlorocebus_sabaeus
ENSRNOG00000012438	Larp6	97	88.075	ENSCHOG00000003318	LARP6	100	88.075	Choloepus_hoffmanni
ENSRNOG00000012438	Larp6	89	70.023	ENSCPBG00000010771	LARP6	84	70.023	Chrysemys_picta_bellii
ENSRNOG00000012438	Larp6	86	92.217	ENSCANG00000025833	LARP6	99	92.217	Colobus_angolensis_palliatus
ENSRNOG00000012438	Larp6	99	95.112	ENSCGRG00001024472	Larp6	99	95.112	Cricetulus_griseus_chok1gshd
ENSRNOG00000012438	Larp6	99	95.112	ENSCGRG00000004527	Larp6	99	95.112	Cricetulus_griseus_crigri
ENSRNOG00000012438	Larp6	95	57.645	ENSCSEG00000011196	larp6a	65	58.559	Cynoglossus_semilaevis
ENSRNOG00000012438	Larp6	87	59.375	ENSCVAG00000009605	larp6a	65	59.152	Cyprinodon_variegatus
ENSRNOG00000012438	Larp6	87	58.036	ENSDARG00000005355	larp6a	96	60.000	Danio_rerio
ENSRNOG00000012438	Larp6	100	88.211	ENSDNOG00000042993	LARP6	100	88.415	Dasypus_novemcinctus
ENSRNOG00000012438	Larp6	100	79.960	ENSDORG00000023910	Larp6	100	79.555	Dipodomys_ordii
ENSRNOG00000012438	Larp6	79	91.200	ENSETEG00000020390	LARP6	78	86.400	Echinops_telfairi
ENSRNOG00000012438	Larp6	100	90.650	ENSEASG00005005490	LARP6	73	90.650	Equus_asinus_asinus
ENSRNOG00000012438	Larp6	100	90.447	ENSECAG00000014190	LARP6	100	90.447	Equus_caballus
ENSRNOG00000012438	Larp6	88	58.079	ENSELUG00000007341	larp6a	66	57.642	Esox_lucius
ENSRNOG00000012438	Larp6	100	89.024	ENSFCAG00000001361	LARP6	100	89.024	Felis_catus
ENSRNOG00000012438	Larp6	88	68.182	ENSFALG00000012389	LARP6	99	64.124	Ficedula_albicollis
ENSRNOG00000012438	Larp6	100	82.317	ENSFDAG00000019994	LARP6	86	89.545	Fukomys_damarensis
ENSRNOG00000012438	Larp6	88	58.590	ENSFHEG00000010312	larp6a	64	58.114	Fundulus_heteroclitus
ENSRNOG00000012438	Larp6	89	70.295	ENSGALG00000004046	LARP6	89	70.295	Gallus_gallus
ENSRNOG00000012438	Larp6	87	59.598	ENSGAFG00000009426	larp6a	65	59.598	Gambusia_affinis
ENSRNOG00000012438	Larp6	86	59.497	ENSGACG00000014622	larp6a	97	58.581	Gasterosteus_aculeatus
ENSRNOG00000012438	Larp6	80	70.202	ENSGAGG00000010802	LARP6	58	70.202	Gopherus_agassizii
ENSRNOG00000012438	Larp6	86	92.217	ENSGGOG00000024151	LARP6	99	92.217	Gorilla_gorilla
ENSRNOG00000012438	Larp6	97	57.980	ENSHBUG00000021014	larp6a	62	58.462	Haplochromis_burtoni
ENSRNOG00000012438	Larp6	100	88.283	ENSHGLG00000015112	LARP6	100	88.283	Heterocephalus_glaber_female
ENSRNOG00000012438	Larp6	86	91.981	ENSHGLG00100013159	LARP6	99	91.981	Heterocephalus_glaber_male
ENSRNOG00000012438	Larp6	97	56.827	ENSHCOG00000001241	larp6a	86	59.292	Hippocampus_comes
ENSRNOG00000012438	Larp6	86	59.775	ENSIPUG00000010187	larp6	65	60.508	Ictalurus_punctatus
ENSRNOG00000012438	Larp6	85	37.825	ENSIPUG00000002828	-	98	37.983	Ictalurus_punctatus
ENSRNOG00000012438	Larp6	94	91.974	ENSSTOG00000024279	LARP6	99	92.544	Ictidomys_tridecemlineatus
ENSRNOG00000012438	Larp6	100	87.602	ENSJJAG00000011013	Larp6	100	87.805	Jaculus_jaculus
ENSRNOG00000012438	Larp6	97	57.863	ENSKMAG00000001702	larp6a	61	59.649	Kryptolebias_marmoratus
ENSRNOG00000012438	Larp6	95	55.647	ENSLBEG00000000170	larp6a	84	57.271	Labrus_bergylta
ENSRNOG00000012438	Larp6	97	64.301	ENSLACG00000018706	LARP6	90	63.542	Latimeria_chalumnae
ENSRNOG00000012438	Larp6	85	41.531	ENSLACG00000002786	-	98	44.393	Latimeria_chalumnae
ENSRNOG00000012438	Larp6	96	60.248	ENSLOCG00000014592	larp6a	69	60.331	Lepisosteus_oculatus
ENSRNOG00000012438	Larp6	84	45.327	ENSLOCG00000008547	-	82	43.458	Lepisosteus_oculatus
ENSRNOG00000012438	Larp6	91	90.135	ENSLAFG00000016343	LARP6	99	90.135	Loxodonta_africana
ENSRNOG00000012438	Larp6	91	92.222	ENSMFAG00000035507	LARP6	100	92.222	Macaca_fascicularis
ENSRNOG00000012438	Larp6	100	87.602	ENSMMUG00000004429	LARP6	100	87.805	Macaca_mulatta
ENSRNOG00000012438	Larp6	100	89.837	ENSMNEG00000045335	LARP6	100	89.837	Macaca_nemestrina
ENSRNOG00000012438	Larp6	86	92.217	ENSMLEG00000038587	LARP6	99	92.217	Mandrillus_leucophaeus
ENSRNOG00000012438	Larp6	95	57.290	ENSMAMG00000005261	larp6a	62	58.613	Mastacembelus_armatus
ENSRNOG00000012438	Larp6	97	57.980	ENSMZEG00005005774	larp6a	62	58.462	Maylandia_zebra
ENSRNOG00000012438	Larp6	85	72.038	ENSMGAG00000005077	LARP6	99	72.038	Meleagris_gallopavo
ENSRNOG00000012438	Larp6	99	94.908	ENSMAUG00000018486	Larp6	99	94.908	Mesocricetus_auratus
ENSRNOG00000012438	Larp6	100	87.195	ENSMICG00000011234	LARP6	100	87.195	Microcebus_murinus
ENSRNOG00000012438	Larp6	100	94.309	ENSMOCG00000010492	Larp6	100	94.309	Microtus_ochrogaster
ENSRNOG00000012438	Larp6	95	58.471	ENSMMOG00000016284	larp6a	85	59.459	Mola_mola
ENSRNOG00000012438	Larp6	97	75.000	ENSMODG00000009034	LARP6	93	74.333	Monodelphis_domestica
ENSRNOG00000012438	Larp6	95	56.967	ENSMALG00000014439	larp6a	84	58.929	Monopterus_albus
ENSRNOG00000012438	Larp6	100	96.341	MGP_CAROLIEiJ_G0032314	Larp6	100	96.341	Mus_caroli
ENSRNOG00000012438	Larp6	100	96.341	ENSMUSG00000034839	Larp6	100	96.341	Mus_musculus
ENSRNOG00000012438	Larp6	100	95.732	MGP_PahariEiJ_G0015180	Larp6	100	95.732	Mus_pahari
ENSRNOG00000012438	Larp6	100	95.935	MGP_SPRETEiJ_G0033452	Larp6	100	95.935	Mus_spretus
ENSRNOG00000012438	Larp6	87	92.056	ENSMPUG00000017086	LARP6	100	92.056	Mustela_putorius_furo
ENSRNOG00000012438	Larp6	100	89.228	ENSMLUG00000010319	LARP6	100	89.228	Myotis_lucifugus
ENSRNOG00000012438	Larp6	100	89.837	ENSNGAG00000014238	Larp6	100	89.837	Nannospalax_galili
ENSRNOG00000012438	Larp6	97	57.980	ENSNBRG00000008120	larp6a	91	56.768	Neolamprologus_brichardi
ENSRNOG00000012438	Larp6	100	89.431	ENSNLEG00000013691	LARP6	100	89.228	Nomascus_leucogenys
ENSRNOG00000012438	Larp6	84	75.410	ENSMEUG00000002270	LARP6	97	65.145	Notamacropus_eugenii
ENSRNOG00000012438	Larp6	72	78.977	ENSOPRG00000004868	-	100	78.977	Ochotona_princeps
ENSRNOG00000012438	Larp6	100	87.221	ENSODEG00000015958	LARP6	100	87.221	Octodon_degus
ENSRNOG00000012438	Larp6	97	57.746	ENSONIG00000002901	larp6a	86	58.425	Oreochromis_niloticus
ENSRNOG00000012438	Larp6	86	81.412	ENSOCUG00000009306	LARP6	100	81.412	Oryctolagus_cuniculus
ENSRNOG00000012438	Larp6	95	58.144	ENSORLG00000014256	larp6a	86	60.000	Oryzias_latipes
ENSRNOG00000012438	Larp6	95	58.144	ENSORLG00020019657	larp6a	63	60.135	Oryzias_latipes_hni
ENSRNOG00000012438	Larp6	95	58.144	ENSORLG00015017915	larp6a	63	60.135	Oryzias_latipes_hsok
ENSRNOG00000012438	Larp6	95	58.351	ENSOMEG00000017049	larp6a	63	60.360	Oryzias_melastigma
ENSRNOG00000012438	Larp6	100	88.008	ENSOGAG00000000522	LARP6	100	88.008	Otolemur_garnettii
ENSRNOG00000012438	Larp6	87	88.785	ENSOARG00000018750	LARP6	99	88.785	Ovis_aries
ENSRNOG00000012438	Larp6	86	92.217	ENSPPAG00000031247	LARP6	99	92.217	Pan_paniscus
ENSRNOG00000012438	Larp6	100	88.821	ENSPPRG00000011282	LARP6	100	88.821	Panthera_pardus
ENSRNOG00000012438	Larp6	86	90.780	ENSPTIG00000015318	LARP6	86	90.780	Panthera_tigris_altaica
ENSRNOG00000012438	Larp6	100	89.634	ENSPTRG00000007234	LARP6	100	89.634	Pan_troglodytes
ENSRNOG00000012438	Larp6	100	89.837	ENSPANG00000016362	LARP6	100	89.837	Papio_anubis
ENSRNOG00000012438	Larp6	97	56.375	ENSPKIG00000004511	LARP6	67	58.351	Paramormyrops_kingsleyae
ENSRNOG00000012438	Larp6	98	58.012	ENSPKIG00000020103	larp6a	84	59.508	Paramormyrops_kingsleyae
ENSRNOG00000012438	Larp6	62	81.731	ENSPSIG00000009071	LARP6	91	73.333	Pelodiscus_sinensis
ENSRNOG00000012438	Larp6	95	58.351	ENSPMGG00000006958	larp6a	86	59.326	Periophthalmus_magnuspinnatus
ENSRNOG00000012438	Larp6	99	94.297	ENSPEMG00000012909	Larp6	99	94.297	Peromyscus_maniculatus_bairdii
ENSRNOG00000012438	Larp6	97	75.625	ENSPCIG00000020765	LARP6	93	75.625	Phascolarctos_cinereus
ENSRNOG00000012438	Larp6	87	59.821	ENSPFOG00000014175	larp6a	84	60.000	Poecilia_formosa
ENSRNOG00000012438	Larp6	87	59.865	ENSPLAG00000011105	larp6a	62	60.045	Poecilia_latipinna
ENSRNOG00000012438	Larp6	87	59.641	ENSPMEG00000011085	larp6a	63	59.821	Poecilia_mexicana
ENSRNOG00000012438	Larp6	95	57.407	ENSPREG00000008067	larp6a	63	59.598	Poecilia_reticulata
ENSRNOG00000012438	Larp6	100	90.041	ENSPPYG00000006604	LARP6	100	90.041	Pongo_abelii
ENSRNOG00000012438	Larp6	65	91.018	ENSPCAG00000014197	LARP6	76	91.018	Procavia_capensis
ENSRNOG00000012438	Larp6	100	87.602	ENSPCOG00000022934	LARP6	100	87.602	Propithecus_coquereli
ENSRNOG00000012438	Larp6	100	88.821	ENSPVAG00000005618	LARP6	100	88.821	Pteropus_vampyrus
ENSRNOG00000012438	Larp6	97	57.980	ENSPNYG00000009835	larp6a	91	56.364	Pundamilia_nyererei
ENSRNOG00000012438	Larp6	97	56.364	ENSPNAG00000017966	larp6a	78	56.970	Pygocentrus_nattereri
ENSRNOG00000012438	Larp6	98	88.454	ENSRBIG00000032902	LARP6	98	88.454	Rhinopithecus_bieti
ENSRNOG00000012438	Larp6	98	90.683	ENSRROG00000043074	LARP6	98	90.683	Rhinopithecus_roxellana
ENSRNOG00000012438	Larp6	86	91.981	ENSSBOG00000024190	LARP6	99	91.981	Saimiri_boliviensis_boliviensis
ENSRNOG00000012438	Larp6	87	75.000	ENSSHAG00000018495	LARP6	100	75.000	Sarcophilus_harrisii
ENSRNOG00000012438	Larp6	86	60.550	ENSSFOG00015023268	larp6a	84	61.290	Scleropages_formosus
ENSRNOG00000012438	Larp6	95	53.040	ENSSFOG00015002254	LARP6	83	56.522	Scleropages_formosus
ENSRNOG00000012438	Larp6	97	57.576	ENSSMAG00000009953	larp6a	63	58.681	Scophthalmus_maximus
ENSRNOG00000012438	Larp6	95	58.025	ENSSDUG00000007438	larp6a	62	59.193	Seriola_dumerili
ENSRNOG00000012438	Larp6	95	58.025	ENSSLDG00000016647	larp6a	62	59.193	Seriola_lalandi_dorsalis
ENSRNOG00000012438	Larp6	86	71.327	ENSSPUG00000011312	LARP6	99	71.327	Sphenodon_punctatus
ENSRNOG00000012438	Larp6	95	57.526	ENSSPAG00000020502	larp6a	62	59.326	Stegastes_partitus
ENSRNOG00000012438	Larp6	100	88.211	ENSSSCG00000004974	LARP6	100	88.211	Sus_scrofa
ENSRNOG00000012438	Larp6	85	69.194	ENSTGUG00000005808	LARP6	99	69.194	Taeniopygia_guttata
ENSRNOG00000012438	Larp6	96	57.460	ENSTRUG00000003151	larp6a	66	58.734	Takifugu_rubripes
ENSRNOG00000012438	Larp6	95	56.933	ENSTNIG00000011926	larp6a	88	58.371	Tetraodon_nigroviridis
ENSRNOG00000012438	Larp6	86	88.471	ENSTBEG00000015077	LARP6	100	88.471	Tupaia_belangeri
ENSRNOG00000012438	Larp6	87	90.187	ENSUAMG00000010467	LARP6	87	90.000	Ursus_americanus
ENSRNOG00000012438	Larp6	86	92.689	ENSVVUG00000015227	LARP6	98	89.532	Vulpes_vulpes
ENSRNOG00000012438	Larp6	96	66.387	ENSXETG00000020340	larp6	93	66.176	Xenopus_tropicalis
ENSRNOG00000012438	Larp6	87	59.641	ENSXCOG00000012654	larp6a	89	59.821	Xiphophorus_couchianus
ENSRNOG00000012438	Larp6	87	59.641	ENSXMAG00000021015	larp6a	60	59.821	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005844	polysome	-	IEA	Component
GO:0005844	polysome	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process
GO:0017022	myosin binding	-	IEA	Function
GO:0017022	myosin binding	-	ISO	Function
GO:0032967	positive regulation of collagen biosynthetic process	-	IEA	Process
GO:0032967	positive regulation of collagen biosynthetic process	-	ISO	Process
GO:0035613	RNA stem-loop binding	-	IEA	Function
GO:0035613	RNA stem-loop binding	-	ISO	Function
GO:0045727	positive regulation of translation	-	IEA	Process
GO:0045727	positive regulation of translation	-	ISO	Process
GO:0048027	mRNA 5'-UTR binding	-	IEA	Function
GO:0048027	mRNA 5'-UTR binding	-	ISO	Function
GO:1902416	positive regulation of mRNA binding	-	IEA	Process
GO:1902416	positive regulation of mRNA binding	-	ISO	Process
GO:1990825	sequence-specific mRNA binding	-	IEA	Function
GO:1990825	sequence-specific mRNA binding	-	ISO	Function
GO:1990904	ribonucleoprotein complex	-	ISO	Component