EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012574 (Gene tree)
Gene ID: 499339
Gene Symbol: Pum3
Alias: LOC499339
Full Name: pumilio RNA-binding family member 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 37724 bases
Position: chr1:245476529-245514252
Accession: 1564753
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000034834	CPL	PF08144.11	9.1e-53	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000033724	-	1944	XM_006231246	ENSRNOP00000034834	647 (aa)	XP_006231308	Q562C7

Gene Model

Click here to download ENSRNOG00000012574's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012574's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012574	Pum3	100	99.227	ENSRNOG00000048356	RGD1308750	100	99.227

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012574	Pum3	100	88.580	ENSG00000080608	PUM3	100	88.580	Homo_sapiens
ENSRNOG00000012574	Pum3	96	54.677	ENSAPOG00000020252	pum3	97	53.385	Acanthochromis_polyacanthus
ENSRNOG00000012574	Pum3	100	87.326	ENSAMEG00000012187	PUM3	100	87.326	Ailuropoda_melanoleuca
ENSRNOG00000012574	Pum3	86	55.437	ENSACIG00000009786	pum3	88	56.522	Amphilophus_citrinellus
ENSRNOG00000012574	Pum3	83	60.748	ENSAOCG00000004439	pum3	97	54.237	Amphiprion_ocellaris
ENSRNOG00000012574	Pum3	83	60.748	ENSAPEG00000020523	pum3	97	54.237	Amphiprion_percula
ENSRNOG00000012574	Pum3	83	61.682	ENSATEG00000005799	pum3	98	55.521	Anabas_testudineus
ENSRNOG00000012574	Pum3	96	72.669	ENSAPLG00000002920	PUM3	100	72.669	Anas_platyrhynchos
ENSRNOG00000012574	Pum3	93	66.446	ENSACAG00000003174	PUM3	99	68.439	Anolis_carolinensis
ENSRNOG00000012574	Pum3	100	89.335	ENSANAG00000024520	PUM3	100	89.335	Aotus_nancymaae
ENSRNOG00000012574	Pum3	99	55.194	ENSACLG00000001017	pum3	97	54.884	Astatotilapia_calliptera
ENSRNOG00000012574	Pum3	95	64.082	ENSAMXG00000020911	pum3	99	64.184	Astyanax_mexicanus
ENSRNOG00000012574	Pum3	100	87.172	ENSBTAG00000013357	PUM3	100	87.172	Bos_taurus
ENSRNOG00000012574	Pum3	75	32.797	WBGene00014165	puf-12	64	32.797	Caenorhabditis_elegans
ENSRNOG00000012574	Pum3	100	88.717	ENSCJAG00000010917	PUM3	100	88.717	Callithrix_jacchus
ENSRNOG00000012574	Pum3	100	86.862	ENSCAFG00000002035	PUM3	99	86.862	Canis_familiaris
ENSRNOG00000012574	Pum3	100	86.862	ENSCAFG00020026867	PUM3	99	86.862	Canis_lupus_dingo
ENSRNOG00000012574	Pum3	100	87.017	ENSCHIG00000021559	PUM3	100	87.017	Capra_hircus
ENSRNOG00000012574	Pum3	100	87.017	ENSTSYG00000007481	PUM3	100	87.017	Carlito_syrichta
ENSRNOG00000012574	Pum3	100	83.333	ENSCAPG00000010592	-	99	83.333	Cavia_aperea
ENSRNOG00000012574	Pum3	100	84.853	ENSCPOG00000008552	-	99	84.853	Cavia_porcellus
ENSRNOG00000012574	Pum3	100	88.872	ENSCCAG00000032650	PUM3	100	88.872	Cebus_capucinus
ENSRNOG00000012574	Pum3	100	88.872	ENSCATG00000024880	PUM3	100	88.872	Cercocebus_atys
ENSRNOG00000012574	Pum3	100	87.172	ENSCLAG00000011892	PUM3	99	87.172	Chinchilla_lanigera
ENSRNOG00000012574	Pum3	100	89.181	ENSCSAG00000008691	PUM3	100	89.181	Chlorocebus_sabaeus
ENSRNOG00000012574	Pum3	100	67.852	ENSCHOG00000002535	PUM3	95	67.852	Choloepus_hoffmanni
ENSRNOG00000012574	Pum3	100	70.943	ENSCPBG00000025470	PUM3	95	70.943	Chrysemys_picta_bellii
ENSRNOG00000012574	Pum3	81	41.499	ENSCING00000024199	-	87	42.159	Ciona_intestinalis
ENSRNOG00000012574	Pum3	86	39.931	ENSCSAVG00000006072	-	99	40.381	Ciona_savignyi
ENSRNOG00000012574	Pum3	100	89.181	ENSCANG00000006142	PUM3	100	89.181	Colobus_angolensis_palliatus
ENSRNOG00000012574	Pum3	100	91.808	ENSCGRG00001016402	Pum3	99	91.808	Cricetulus_griseus_chok1gshd
ENSRNOG00000012574	Pum3	100	91.808	ENSCGRG00000010207	Pum3	99	91.808	Cricetulus_griseus_crigri
ENSRNOG00000012574	Pum3	89	57.021	ENSCSEG00000001565	pum3	99	57.094	Cynoglossus_semilaevis
ENSRNOG00000012574	Pum3	62	51.852	ENSCVAG00000006550	pum3	95	51.852	Cyprinodon_variegatus
ENSRNOG00000012574	Pum3	99	64.642	ENSDARG00000087779	pum3	97	63.863	Danio_rerio
ENSRNOG00000012574	Pum3	100	74.923	ENSDNOG00000008157	PUM3	70	75.309	Dasypus_novemcinctus
ENSRNOG00000012574	Pum3	81	81.025	ENSETEG00000015331	PUM3	81	81.025	Echinops_telfairi
ENSRNOG00000012574	Pum3	81	40.901	ENSEBUG00000011586	pum3	76	41.634	Eptatretus_burgeri
ENSRNOG00000012574	Pum3	99	88.700	ENSEASG00005010350	PUM3	100	88.563	Equus_asinus_asinus
ENSRNOG00000012574	Pum3	99	88.854	ENSECAG00000017193	PUM3	100	88.717	Equus_caballus
ENSRNOG00000012574	Pum3	93	77.778	ENSEEUG00000010314	PUM3	100	77.778	Erinaceus_europaeus
ENSRNOG00000012574	Pum3	96	61.635	ENSELUG00000002215	pum3	98	61.635	Esox_lucius
ENSRNOG00000012574	Pum3	100	71.626	ENSFALG00000010509	PUM3	100	71.626	Ficedula_albicollis
ENSRNOG00000012574	Pum3	100	86.553	ENSFDAG00000021027	PUM3	99	86.553	Fukomys_damarensis
ENSRNOG00000012574	Pum3	91	58.901	ENSFHEG00000015576	pum3	98	58.901	Fundulus_heteroclitus
ENSRNOG00000012574	Pum3	83	60.075	ENSGMOG00000014217	pum3	97	59.924	Gadus_morhua
ENSRNOG00000012574	Pum3	99	70.046	ENSGALG00000010178	PUM3	100	70.046	Gallus_gallus
ENSRNOG00000012574	Pum3	55	60.497	ENSGAFG00000001930	pum3	62	60.497	Gambusia_affinis
ENSRNOG00000012574	Pum3	82	59.398	ENSGACG00000017878	pum3	96	59.393	Gasterosteus_aculeatus
ENSRNOG00000012574	Pum3	100	70.943	ENSGAGG00000018983	PUM3	99	71.611	Gopherus_agassizii
ENSRNOG00000012574	Pum3	100	89.026	ENSGGOG00000006143	PUM3	100	89.026	Gorilla_gorilla
ENSRNOG00000012574	Pum3	89	52.850	ENSHBUG00000012903	pum3	96	50.000	Haplochromis_burtoni
ENSRNOG00000012574	Pum3	100	86.553	ENSHGLG00000015868	-	99	86.553	Heterocephalus_glaber_female
ENSRNOG00000012574	Pum3	100	86.553	ENSHGLG00100018825	PUM3	100	86.553	Heterocephalus_glaber_male
ENSRNOG00000012574	Pum3	92	58.401	ENSHCOG00000010306	pum3	96	56.000	Hippocampus_comes
ENSRNOG00000012574	Pum3	87	67.611	ENSIPUG00000024801	pum3	98	63.535	Ictalurus_punctatus
ENSRNOG00000012574	Pum3	100	89.181	ENSSTOG00000009586	PUM3	99	89.181	Ictidomys_tridecemlineatus
ENSRNOG00000012574	Pum3	99	86.842	ENSJJAG00000012563	Pum3	99	86.977	Jaculus_jaculus
ENSRNOG00000012574	Pum3	94	56.209	ENSKMAG00000010277	pum3	97	54.799	Kryptolebias_marmoratus
ENSRNOG00000012574	Pum3	96	55.751	ENSLBEG00000012213	pum3	96	54.588	Labrus_bergylta
ENSRNOG00000012574	Pum3	100	66.003	ENSLACG00000008312	PUM3	100	66.003	Latimeria_chalumnae
ENSRNOG00000012574	Pum3	97	65.831	ENSLOCG00000012529	pum3	99	65.934	Lepisosteus_oculatus
ENSRNOG00000012574	Pum3	100	86.090	ENSLAFG00000017341	PUM3	99	86.090	Loxodonta_africana
ENSRNOG00000012574	Pum3	100	89.645	ENSMFAG00000001430	PUM3	100	89.645	Macaca_fascicularis
ENSRNOG00000012574	Pum3	100	89.645	ENSMMUG00000002362	PUM3	99	89.645	Macaca_mulatta
ENSRNOG00000012574	Pum3	100	89.645	ENSMNEG00000035288	PUM3	100	89.645	Macaca_nemestrina
ENSRNOG00000012574	Pum3	100	89.026	ENSMLEG00000034820	PUM3	100	89.026	Mandrillus_leucophaeus
ENSRNOG00000012574	Pum3	85	58.584	ENSMAMG00000022861	pum3	99	54.448	Mastacembelus_armatus
ENSRNOG00000012574	Pum3	96	55.901	ENSMZEG00005014205	pum3	95	53.846	Maylandia_zebra
ENSRNOG00000012574	Pum3	99	63.609	ENSMGAG00000002255	PUM3	99	64.696	Meleagris_gallopavo
ENSRNOG00000012574	Pum3	100	91.654	ENSMAUG00000009733	Pum3	99	91.654	Mesocricetus_auratus
ENSRNOG00000012574	Pum3	99	88.235	ENSMICG00000045916	PUM3	87	88.235	Microcebus_murinus
ENSRNOG00000012574	Pum3	100	92.272	ENSMOCG00000019519	-	99	92.272	Microtus_ochrogaster
ENSRNOG00000012574	Pum3	100	88.099	ENSMOCG00000014830	-	100	87.635	Microtus_ochrogaster
ENSRNOG00000012574	Pum3	99	51.633	ENSMMOG00000012184	pum3	99	51.487	Mola_mola
ENSRNOG00000012574	Pum3	100	67.961	ENSMODG00000015417	PUM3	86	74.798	Monodelphis_domestica
ENSRNOG00000012574	Pum3	83	59.813	ENSMALG00000022164	pum3	93	54.416	Monopterus_albus
ENSRNOG00000012574	Pum3	100	93.199	MGP_CAROLIEiJ_G0022845	Pum3	99	93.199	Mus_caroli
ENSRNOG00000012574	Pum3	100	92.890	ENSMUSG00000041360	Pum3	99	92.890	Mus_musculus
ENSRNOG00000012574	Pum3	99	93.653	MGP_PahariEiJ_G0014338	Pum3	99	93.653	Mus_pahari
ENSRNOG00000012574	Pum3	100	92.736	MGP_SPRETEiJ_G0023763	Pum3	99	92.736	Mus_spretus
ENSRNOG00000012574	Pum3	100	85.162	ENSMPUG00000005125	PUM3	100	85.162	Mustela_putorius_furo
ENSRNOG00000012574	Pum3	99	85.913	ENSMLUG00000002309	PUM3	99	85.913	Myotis_lucifugus
ENSRNOG00000012574	Pum3	100	86.133	ENSNGAG00000019468	Pum3	100	86.133	Nannospalax_galili
ENSRNOG00000012574	Pum3	93	53.770	ENSNBRG00000021370	pum3	79	59.245	Neolamprologus_brichardi
ENSRNOG00000012574	Pum3	100	89.181	ENSNLEG00000008712	PUM3	100	89.181	Nomascus_leucogenys
ENSRNOG00000012574	Pum3	75	59.138	ENSMEUG00000013606	-	96	59.091	Notamacropus_eugenii
ENSRNOG00000012574	Pum3	79	74.414	ENSOPRG00000004225	-	79	74.414	Ochotona_princeps
ENSRNOG00000012574	Pum3	100	85.781	ENSODEG00000003625	-	99	85.781	Octodon_degus
ENSRNOG00000012574	Pum3	100	80.462	ENSODEG00000016477	-	100	80.462	Octodon_degus
ENSRNOG00000012574	Pum3	99	54.729	ENSONIG00000012733	pum3	97	54.574	Oreochromis_niloticus
ENSRNOG00000012574	Pum3	81	78.072	ENSOANG00000014995	PUM3	97	78.072	Ornithorhynchus_anatinus
ENSRNOG00000012574	Pum3	100	86.090	ENSOCUG00000004189	-	100	86.090	Oryctolagus_cuniculus
ENSRNOG00000012574	Pum3	99	85.248	ENSOCUG00000026104	-	100	85.248	Oryctolagus_cuniculus
ENSRNOG00000012574	Pum3	94	54.262	ENSORLG00000014935	pum3	99	53.323	Oryzias_latipes
ENSRNOG00000012574	Pum3	94	54.262	ENSORLG00020002841	pum3	99	53.096	Oryzias_latipes_hni
ENSRNOG00000012574	Pum3	96	53.560	ENSORLG00015015906	pum3	99	53.251	Oryzias_latipes_hsok
ENSRNOG00000012574	Pum3	94	54.441	ENSOMEG00000009427	pum3	97	52.248	Oryzias_melastigma
ENSRNOG00000012574	Pum3	99	64.832	ENSOGAG00000033481	-	99	63.914	Otolemur_garnettii
ENSRNOG00000012574	Pum3	100	86.728	ENSOGAG00000008125	-	100	86.728	Otolemur_garnettii
ENSRNOG00000012574	Pum3	100	86.441	ENSOARG00000013337	PUM3	100	86.441	Ovis_aries
ENSRNOG00000012574	Pum3	100	88.889	ENSPPAG00000041337	PUM3	100	88.889	Pan_paniscus
ENSRNOG00000012574	Pum3	100	85.626	ENSPPRG00000000809	PUM3	100	85.626	Panthera_pardus
ENSRNOG00000012574	Pum3	100	85.935	ENSPTIG00000021934	PUM3	100	85.935	Panthera_tigris_altaica
ENSRNOG00000012574	Pum3	100	89.043	ENSPTRG00000020735	PUM3	100	89.043	Pan_troglodytes
ENSRNOG00000012574	Pum3	100	89.026	ENSPANG00000025118	PUM3	100	89.026	Papio_anubis
ENSRNOG00000012574	Pum3	99	63.761	ENSPKIG00000022249	pum3	99	65.620	Paramormyrops_kingsleyae
ENSRNOG00000012574	Pum3	100	71.406	ENSPSIG00000016272	PUM3	100	71.406	Pelodiscus_sinensis
ENSRNOG00000012574	Pum3	76	62.322	ENSPMGG00000021261	pum3	98	62.322	Periophthalmus_magnuspinnatus
ENSRNOG00000012574	Pum3	89	88.679	ENSPEMG00000019340	-	100	88.679	Peromyscus_maniculatus_bairdii
ENSRNOG00000012574	Pum3	100	74.756	ENSPCIG00000030598	PUM3	93	74.756	Phascolarctos_cinereus
ENSRNOG00000012574	Pum3	91	55.740	ENSPFOG00000001719	pum3	98	54.662	Poecilia_formosa
ENSRNOG00000012574	Pum3	91	56.837	ENSPLAG00000020010	pum3	93	56.364	Poecilia_latipinna
ENSRNOG00000012574	Pum3	92	55.868	ENSPMEG00000017451	pum3	93	56.601	Poecilia_mexicana
ENSRNOG00000012574	Pum3	51	46.759	ENSPREG00000019478	-	69	64.737	Poecilia_reticulata
ENSRNOG00000012574	Pum3	100	89.026	ENSPPYG00000019255	PUM3	100	89.026	Pongo_abelii
ENSRNOG00000012574	Pum3	100	73.416	ENSPCAG00000005797	PUM3	95	73.416	Procavia_capensis
ENSRNOG00000012574	Pum3	100	88.563	ENSPCOG00000027325	PUM3	100	88.563	Propithecus_coquereli
ENSRNOG00000012574	Pum3	100	83.771	ENSPVAG00000016135	PUM3	95	83.771	Pteropus_vampyrus
ENSRNOG00000012574	Pum3	96	55.901	ENSPNYG00000016124	pum3	97	54.758	Pundamilia_nyererei
ENSRNOG00000012574	Pum3	94	63.799	ENSPNAG00000026524	pum3	98	63.799	Pygocentrus_nattereri
ENSRNOG00000012574	Pum3	100	89.026	ENSRBIG00000036924	PUM3	100	89.026	Rhinopithecus_bieti
ENSRNOG00000012574	Pum3	100	89.181	ENSRROG00000041089	PUM3	100	89.181	Rhinopithecus_roxellana
ENSRNOG00000012574	Pum3	100	89.335	ENSSBOG00000028066	PUM3	100	89.335	Saimiri_boliviensis_boliviensis
ENSRNOG00000012574	Pum3	100	76.425	ENSSHAG00000003730	PUM3	100	76.425	Sarcophilus_harrisii
ENSRNOG00000012574	Pum3	99	62.906	ENSSFOG00015018778	pum3	98	62.906	Scleropages_formosus
ENSRNOG00000012574	Pum3	86	58.855	ENSSMAG00000013236	pum3	96	54.743	Scophthalmus_maximus
ENSRNOG00000012574	Pum3	96	56.704	ENSSDUG00000001887	pum3	94	55.818	Seriola_dumerili
ENSRNOG00000012574	Pum3	94	57.049	ENSSLDG00000015766	pum3	96	55.418	Seriola_lalandi_dorsalis
ENSRNOG00000012574	Pum3	96	82.553	ENSSARG00000000579	PUM3	100	82.553	Sorex_araneus
ENSRNOG00000012574	Pum3	100	68.470	ENSSPUG00000001707	PUM3	100	68.470	Sphenodon_punctatus
ENSRNOG00000012574	Pum3	96	54.575	ENSSPAG00000003976	pum3	97	53.787	Stegastes_partitus
ENSRNOG00000012574	Pum3	100	86.553	ENSSSCG00000005227	PUM3	99	86.606	Sus_scrofa
ENSRNOG00000012574	Pum3	100	70.788	ENSTGUG00000005339	PUM3	100	70.788	Taeniopygia_guttata
ENSRNOG00000012574	Pum3	96	56.098	ENSTRUG00000004074	pum3	79	62.429	Takifugu_rubripes
ENSRNOG00000012574	Pum3	90	59.278	ENSTNIG00000010325	pum3	98	58.429	Tetraodon_nigroviridis
ENSRNOG00000012574	Pum3	86	68.223	ENSTBEG00000013058	PUM3	86	68.223	Tupaia_belangeri
ENSRNOG00000012574	Pum3	100	78.980	ENSTTRG00000001062	PUM3	96	78.980	Tursiops_truncatus
ENSRNOG00000012574	Pum3	100	78.362	ENSUMAG00000018443	PUM3	99	81.404	Ursus_maritimus
ENSRNOG00000012574	Pum3	100	86.265	ENSVPAG00000010766	PUM3	99	86.265	Vicugna_pacos
ENSRNOG00000012574	Pum3	100	86.862	ENSVVUG00000006527	PUM3	99	86.862	Vulpes_vulpes
ENSRNOG00000012574	Pum3	99	58.525	ENSXETG00000011707	pum3	99	58.525	Xenopus_tropicalis
ENSRNOG00000012574	Pum3	91	54.983	ENSXCOG00000006725	pum3	99	51.520	Xiphophorus_couchianus
ENSRNOG00000012574	Pum3	91	56.931	ENSXMAG00000002926	pum3	93	53.440	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	-	IEA	Function
GO:0003723	RNA binding	-	IEA	Function
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005654	nucleoplasm	-	ISS	Component
GO:0005694	chromosome	-	ISO	Component
GO:0005694	chromosome	-	ISS	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005730	nucleolus	-	ISS	Component
GO:0005783	endoplasmic reticulum	-	ISO	Component
GO:0010835	regulation of protein ADP-ribosylation	-	ISO	Process
GO:0010835	regulation of protein ADP-ribosylation	-	ISS	Process