EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000012629 (Gene tree)
Gene ID
367242
Gene Symbol
Rab23
Alias
LOC367242
Full Name
RAB23%2C member RAS oncogene family
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Minus strand
Length
24879 bases
Position
chr9:38470298-38495176
Accession
1306867
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000016933MMR_HSR1PF01926.236.1e-0611
ENSRNOP00000072716MMR_HSR1PF01926.236.1e-0611
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000016933-2402XM_008766961ENSRNOP00000016933237 (aa)XP_008765183D3ZRM5
ENSRNOT00000090385-3919XM_008766955ENSRNOP00000072716237 (aa)XP_008765177D3ZRM5
Gene Model
Click here to download ENSRNOG00000012629's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012629's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000012629Rab237437.500ENSRNOG00000010224Rab308737.500
ENSRNOG00000012629Rab236639.873ENSRNOG00000018176Rab6a7639.873
ENSRNOG00000012629Rab236131.973ENSRNOG00000023079Nras8235.032
ENSRNOG00000012629Rab236738.125ENSRNOG00000006130Rab5b7438.125
ENSRNOG00000012629Rab236641.139ENSRNOG00000009198Rab6b7641.139
ENSRNOG00000012629Rab236534.416ENSRNOG00000005762Rab22a7934.416
ENSRNOG00000012629Rab236633.129ENSRNOG00000006698Rab33a6933.129
ENSRNOG00000012629Rab237235.465ENSRNOG00000018972Rab188335.465
ENSRNOG00000012629Rab238633.010ENSRNOG00000012488Rab2b9433.010
ENSRNOG00000012629Rab236730.435ENSRNOG00000014060Mras9030.928
ENSRNOG00000012629Rab237034.337ENSRNOG00000004992Rab1a8134.337
ENSRNOG00000012629Rab238531.188ENSRNOG00000023640Rab259231.188
ENSRNOG00000012629Rab236534.375ENSRNOG00000030443Rab9a7934.375
ENSRNOG00000012629Rab238033.508ENSRNOG00000011302Rab11a8833.508
ENSRNOG00000012629Rab238431.658ENSRNOG00000050510LOC1025551679931.658
ENSRNOG00000012629Rab237535.593ENSRNOG00000022014Rab359534.211
ENSRNOG00000012629Rab237235.088ENSRNOG00000005963Rab2a9933.659
ENSRNOG00000012629Rab236730.435ENSRNOG00000009338Kras9033.140
ENSRNOG00000012629Rab237234.682ENSRNOG00000007364Rab158134.682
ENSRNOG00000012629Rab236535.484ENSRNOG00000050578Rheb8435.484
ENSRNOG00000012629Rab237830.645ENSRNOG00000042189Rab319030.645
ENSRNOG00000012629Rab237336.416ENSRNOG00000018568Rab5c8036.416
ENSRNOG00000012629Rab236931.429ENSRNOG00000000956Rasl11a6930.588
ENSRNOG00000012629Rab237535.326ENSRNOG00000047960Rab9b8835.326
ENSRNOG00000012629Rab236939.394ENSRNOG00000016733Rab138139.394
ENSRNOG00000012629Rab237034.337ENSRNOG00000018901Rab147734.337
ENSRNOG00000012629Rab237234.637ENSRNOG00000013035Rab33b7834.637
ENSRNOG00000012629Rab237133.908ENSRNOG00000012247Rab7a9333.908
ENSRNOG00000012629Rab237737.634ENSRNOG00000001311Rab366937.634
ENSRNOG00000012629Rab237232.402ENSRNOG00000019295Rab127232.402
ENSRNOG00000012629Rab237531.016ENSRNOG00000002097Rasl11b7431.016
ENSRNOG00000012629Rab236438.462ENSRNOG00000023375Rab346138.462
ENSRNOG00000012629Rab236531.250ENSRNOG00000003988Dnajc275931.250
ENSRNOG00000012629Rab238034.555ENSRNOG00000007648Rab11b8834.555
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000012629Rab2310093.671ENSG00000112210RAB2310093.671Homo_sapiens
ENSRNOG00000012629Rab239983.761ENSAPOG00000008892rab239983.761Acanthochromis_polyacanthus
ENSRNOG00000012629Rab2310092.827ENSAMEG00000006825RAB2310092.827Ailuropoda_melanoleuca
ENSRNOG00000012629Rab239973.305ENSACIG00000020496rab239973.305Amphilophus_citrinellus
ENSRNOG00000012629Rab239983.475ENSAOCG00000004234rab239983.475Amphiprion_ocellaris
ENSRNOG00000012629Rab239983.475ENSAPEG00000019758rab239983.475Amphiprion_percula
ENSRNOG00000012629Rab239982.627ENSATEG00000020913rab239982.627Anabas_testudineus
ENSRNOG00000012629Rab237492.045ENSAPLG00000003715RAB239992.045Anas_platyrhynchos
ENSRNOG00000012629Rab2310086.134ENSACAG00000006656RAB2310086.134Anolis_carolinensis
ENSRNOG00000012629Rab2310093.249ENSANAG00000027052-10093.249Aotus_nancymaae
ENSRNOG00000012629Rab239983.051ENSACLG00000002819rab239983.051Astatotilapia_calliptera
ENSRNOG00000012629Rab239986.017ENSAMXG00000014960rab239986.017Astyanax_mexicanus
ENSRNOG00000012629Rab2310093.249ENSBTAG00000005362RAB2310093.249Bos_taurus
ENSRNOG00000012629Rab2310093.249ENSCJAG00000010247RAB2310093.249Callithrix_jacchus
ENSRNOG00000012629Rab2310093.671ENSCAFG00000002459RAB2310093.671Canis_familiaris
ENSRNOG00000012629Rab2310093.671ENSCAFG00020015900RAB2310093.671Canis_lupus_dingo
ENSRNOG00000012629Rab2310093.249ENSCHIG00000009815RAB2310093.249Capra_hircus
ENSRNOG00000012629Rab239993.644ENSTSYG00000029126RAB239993.644Carlito_syrichta
ENSRNOG00000012629Rab2310089.873ENSCPOG00000030218RAB2310089.873Cavia_porcellus
ENSRNOG00000012629Rab2310092.827ENSCCAG00000020364RAB2310092.827Cebus_capucinus
ENSRNOG00000012629Rab2310093.671ENSCATG00000027876RAB2310093.671Cercocebus_atys
ENSRNOG00000012629Rab2310091.983ENSCLAG00000000797RAB2310091.983Chinchilla_lanigera
ENSRNOG00000012629Rab2310093.671ENSCSAG00000013438RAB2310093.671Chlorocebus_sabaeus
ENSRNOG00000012629Rab2310086.920ENSCPBG00000022640RAB2310086.920Chrysemys_picta_bellii
ENSRNOG00000012629Rab239968.313ENSCING00000001155-9968.313Ciona_intestinalis
ENSRNOG00000012629Rab239965.126ENSCSAVG00000001356-9965.690Ciona_savignyi
ENSRNOG00000012629Rab2310092.827ENSCANG00000031065RAB2310092.827Colobus_angolensis_palliatus
ENSRNOG00000012629Rab2310094.937ENSCGRG00001008994Rab2310094.937Cricetulus_griseus_chok1gshd
ENSRNOG00000012629Rab239994.068ENSCGRG00000013630Rab2310094.068Cricetulus_griseus_crigri
ENSRNOG00000012629Rab239973.729ENSCSEG00000010565rab239974.359Cynoglossus_semilaevis
ENSRNOG00000012629Rab239982.627ENSCVAG00000020501rab239982.627Cyprinodon_variegatus
ENSRNOG00000012629Rab239984.746ENSDARG00000004151rab239984.746Danio_rerio
ENSRNOG00000012629Rab2310089.873ENSDNOG00000015501RAB2310089.873Dasypus_novemcinctus
ENSRNOG00000012629Rab239991.525ENSDORG00000028344Rab239991.525Dipodomys_ordii
ENSRNOG00000012629Rab239459.389FBgn0037364Rab238259.825Drosophila_melanogaster
ENSRNOG00000012629Rab239764.224ENSEBUG00000010861-9264.224Eptatretus_burgeri
ENSRNOG00000012629Rab2310092.827ENSEASG00005003529RAB2310092.827Equus_asinus_asinus
ENSRNOG00000012629Rab2310091.983ENSECAG00000013427RAB2310091.983Equus_caballus
ENSRNOG00000012629Rab239991.525ENSEEUG00000015045RAB239991.525Erinaceus_europaeus
ENSRNOG00000012629Rab239982.203ENSELUG00000020788rab239983.475Esox_lucius
ENSRNOG00000012629Rab2310093.249ENSFCAG00000044358RAB2310093.249Felis_catus
ENSRNOG00000012629Rab2310085.654ENSFALG00000001708RAB2310085.654Ficedula_albicollis
ENSRNOG00000012629Rab2310090.717ENSFDAG00000014834RAB2310090.717Fukomys_damarensis
ENSRNOG00000012629Rab239981.780ENSFHEG00000023069rab239982.203Fundulus_heteroclitus
ENSRNOG00000012629Rab239983.898ENSGMOG00000005102rab239983.898Gadus_morhua
ENSRNOG00000012629Rab2310085.654ENSGALG00000016279RAB2310085.654Gallus_gallus
ENSRNOG00000012629Rab239981.356ENSGAFG00000007684rab239981.356Gambusia_affinis
ENSRNOG00000012629Rab239983.475ENSGACG00000006151rab239983.475Gasterosteus_aculeatus
ENSRNOG00000012629Rab2310087.342ENSGAGG00000012709RAB2310087.342Gopherus_agassizii
ENSRNOG00000012629Rab239973.729ENSHBUG00000007966rab239973.729Haplochromis_burtoni
ENSRNOG00000012629Rab2310077.178ENSHGLG00000009371-10077.178Heterocephalus_glaber_female
ENSRNOG00000012629Rab2310091.561ENSHGLG00000013030-10091.561Heterocephalus_glaber_female
ENSRNOG00000012629Rab2310077.178ENSHGLG00100017177-10077.178Heterocephalus_glaber_male
ENSRNOG00000012629Rab2310091.561ENSHGLG00100005945-10091.561Heterocephalus_glaber_male
ENSRNOG00000012629Rab239970.763ENSHCOG00000013919rab239971.186Hippocampus_comes
ENSRNOG00000012629Rab239975.847ENSIPUG00000016494rab239975.847Ictalurus_punctatus
ENSRNOG00000012629Rab2310092.827ENSSTOG00000010962RAB2310092.827Ictidomys_tridecemlineatus
ENSRNOG00000012629Rab2310092.405ENSJJAG00000020094Rab2310092.405Jaculus_jaculus
ENSRNOG00000012629Rab239982.203ENSKMAG00000018270rab239982.203Kryptolebias_marmoratus
ENSRNOG00000012629Rab239982.627ENSLBEG00000013176rab239982.627Labrus_bergylta
ENSRNOG00000012629Rab239986.017ENSLACG00000004025RAB239986.017Latimeria_chalumnae
ENSRNOG00000012629Rab239985.774ENSLOCG00000016999rab239986.498Lepisosteus_oculatus
ENSRNOG00000012629Rab2310093.249ENSLAFG00000007209RAB2310093.249Loxodonta_africana
ENSRNOG00000012629Rab2310093.671ENSMFAG00000032369RAB2310093.671Macaca_fascicularis
ENSRNOG00000012629Rab2310093.671ENSMMUG00000018003RAB2310093.671Macaca_mulatta
ENSRNOG00000012629Rab2310093.671ENSMNEG00000037012RAB2310093.671Macaca_nemestrina
ENSRNOG00000012629Rab2310093.671ENSMLEG00000042429RAB2310093.671Mandrillus_leucophaeus
ENSRNOG00000012629Rab239983.475ENSMAMG00000015456rab239983.475Mastacembelus_armatus
ENSRNOG00000012629Rab239983.051ENSMZEG00005005441rab239983.051Maylandia_zebra
ENSRNOG00000012629Rab2310085.654ENSMGAG00000013882RAB2310085.654Meleagris_gallopavo
ENSRNOG00000012629Rab2310094.093ENSMICG00000014037RAB2310094.093Microcebus_murinus
ENSRNOG00000012629Rab2310095.781ENSMOCG00000000444Rab2310095.781Microtus_ochrogaster
ENSRNOG00000012629Rab239973.305ENSMMOG00000007703rab239973.305Mola_mola
ENSRNOG00000012629Rab2310089.873ENSMODG00000018720RAB2310089.873Monodelphis_domestica
ENSRNOG00000012629Rab239982.627ENSMALG00000002136rab239982.627Monopterus_albus
ENSRNOG00000012629Rab2310097.468MGP_CAROLIEiJ_G0014015Rab2310097.468Mus_caroli
ENSRNOG00000012629Rab2310097.046ENSMUSG00000004768Rab2310097.046Mus_musculus
ENSRNOG00000012629Rab2310096.624MGP_PahariEiJ_G0027261Rab2310096.624Mus_pahari
ENSRNOG00000012629Rab2310097.468MGP_SPRETEiJ_G0014820Rab2310097.468Mus_spretus
ENSRNOG00000012629Rab2310083.613ENSMPUG00000002642RAB2310083.613Mustela_putorius_furo
ENSRNOG00000012629Rab2310093.249ENSMLUG00000004058RAB2310093.249Myotis_lucifugus
ENSRNOG00000012629Rab2310093.671ENSNGAG00000018038Rab2310093.671Nannospalax_galili
ENSRNOG00000012629Rab239983.051ENSNBRG00000013691rab239983.051Neolamprologus_brichardi
ENSRNOG00000012629Rab2310094.093ENSNLEG00000027830RAB2310094.093Nomascus_leucogenys
ENSRNOG00000012629Rab2310089.451ENSODEG00000016056RAB2310089.451Octodon_degus
ENSRNOG00000012629Rab239982.278ENSONIG00000009749rab239982.278Oreochromis_niloticus
ENSRNOG00000012629Rab2310089.030ENSOANG00000001398RAB2310089.030Ornithorhynchus_anatinus
ENSRNOG00000012629Rab2310093.249ENSOCUG00000004816RAB2310093.249Oryctolagus_cuniculus
ENSRNOG00000012629Rab239980.932ENSORLG00000010115rab239980.932Oryzias_latipes
ENSRNOG00000012629Rab239980.932ENSORLG00020020220rab239980.932Oryzias_latipes_hni
ENSRNOG00000012629Rab239980.085ENSORLG00015004033rab239980.085Oryzias_latipes_hsok
ENSRNOG00000012629Rab239980.508ENSOMEG00000001706rab239980.508Oryzias_melastigma
ENSRNOG00000012629Rab2310093.671ENSOGAG00000005675RAB2310093.671Otolemur_garnettii
ENSRNOG00000012629Rab2310093.249ENSOARG00000005749RAB2310093.249Ovis_aries
ENSRNOG00000012629Rab2310093.671ENSPPAG00000010023RAB2310093.671Pan_paniscus
ENSRNOG00000012629Rab2310092.827ENSPPRG00000012453RAB2310092.827Panthera_pardus
ENSRNOG00000012629Rab2310093.249ENSPTIG00000009435RAB2310093.249Panthera_tigris_altaica
ENSRNOG00000012629Rab2310094.093ENSPTRG00000043341RAB2310094.093Pan_troglodytes
ENSRNOG00000012629Rab2310093.671ENSPANG00000017772RAB2310093.671Papio_anubis
ENSRNOG00000012629Rab238187.047ENSPKIG00000024310rab239587.047Paramormyrops_kingsleyae
ENSRNOG00000012629Rab2310086.920ENSPSIG00000015579RAB2310086.920Pelodiscus_sinensis
ENSRNOG00000012629Rab239972.034ENSPMGG00000008577rab239972.034Periophthalmus_magnuspinnatus
ENSRNOG00000012629Rab2310094.937ENSPEMG00000023271Rab2310094.937Peromyscus_maniculatus_bairdii
ENSRNOG00000012629Rab239966.525ENSPMAG00000006835-9966.525Petromyzon_marinus
ENSRNOG00000012629Rab2310089.873ENSPCIG00000007267RAB2310089.873Phascolarctos_cinereus
ENSRNOG00000012629Rab239981.356ENSPFOG00000011493rab239981.356Poecilia_formosa
ENSRNOG00000012629Rab239980.932ENSPLAG00000011697rab239980.932Poecilia_latipinna
ENSRNOG00000012629Rab239981.356ENSPMEG00000017300rab239981.356Poecilia_mexicana
ENSRNOG00000012629Rab239971.610ENSPREG00000022509rab239971.610Poecilia_reticulata
ENSRNOG00000012629Rab2310094.093ENSPPYG00000016739RAB2310094.093Pongo_abelii
ENSRNOG00000012629Rab2310093.671ENSPCOG00000028471RAB2310093.671Propithecus_coquereli
ENSRNOG00000012629Rab2310084.388ENSPVAG00000017693RAB2310084.388Pteropus_vampyrus
ENSRNOG00000012629Rab239983.051ENSPNYG00000019639rab239983.051Pundamilia_nyererei
ENSRNOG00000012629Rab239986.017ENSPNAG00000024728rab239986.017Pygocentrus_nattereri
ENSRNOG00000012629Rab2310088.843ENSRBIG00000030547RAB2310088.843Rhinopithecus_bieti
ENSRNOG00000012629Rab2310093.249ENSRROG00000035920RAB2310093.249Rhinopithecus_roxellana
ENSRNOG00000012629Rab2310093.671ENSSBOG00000033237RAB2310093.671Saimiri_boliviensis_boliviensis
ENSRNOG00000012629Rab2310089.873ENSSHAG00000006379RAB2310089.873Sarcophilus_harrisii
ENSRNOG00000012629Rab239986.017ENSSFOG00015012604rab239986.752Scleropages_formosus
ENSRNOG00000012629Rab239982.203ENSSMAG00000006341rab239982.203Scophthalmus_maximus
ENSRNOG00000012629Rab239982.627ENSSDUG00000023508rab239982.627Seriola_dumerili
ENSRNOG00000012629Rab239982.627ENSSLDG00000000287rab239982.627Seriola_lalandi_dorsalis
ENSRNOG00000012629Rab2310091.983ENSSARG00000013689RAB2310091.983Sorex_araneus
ENSRNOG00000012629Rab2310088.608ENSSPUG00000006274RAB2310088.608Sphenodon_punctatus
ENSRNOG00000012629Rab239983.475ENSSPAG00000010373rab239983.475Stegastes_partitus
ENSRNOG00000012629Rab2310091.983ENSSSCG00000029539RAB2310091.983Sus_scrofa
ENSRNOG00000012629Rab2310085.654ENSTGUG00000012794RAB2310085.654Taeniopygia_guttata
ENSRNOG00000012629Rab239980.932ENSTRUG00000015697rab239980.932Takifugu_rubripes
ENSRNOG00000012629Rab239982.627ENSTNIG00000016575rab239982.627Tetraodon_nigroviridis
ENSRNOG00000012629Rab2310093.249ENSUAMG00000013367RAB2310093.249Ursus_americanus
ENSRNOG00000012629Rab2310093.249ENSUMAG00000018629RAB2310093.249Ursus_maritimus
ENSRNOG00000012629Rab238165.445ENSVPAG00000006805RAB2310065.445Vicugna_pacos
ENSRNOG00000012629Rab2310093.249ENSVVUG00000008535RAB2310093.249Vulpes_vulpes
ENSRNOG00000012629Rab239979.325ENSXETG00000004449rab239979.325Xenopus_tropicalis
ENSRNOG00000012629Rab239980.932ENSXCOG00000011864rab239980.932Xiphophorus_couchianus
ENSRNOG00000012629Rab239981.356ENSXMAG00000009387rab239981.356Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000045autophagosome assembly21873635.IBAProcess
GO:0000045autophagosome assembly-ISOProcess
GO:0001843neural tube closure-ISOProcess
GO:0003924GTPase activity21873635.IBAFunction
GO:0003924GTPase activity-ISOFunction
GO:0005525GTP binding-IEAFunction
GO:0005737cytoplasm-ISOComponent
GO:0005776autophagosome21873635.IBAComponent
GO:0005776autophagosome-ISOComponent
GO:0005813centrosome-IEAComponent
GO:0005813centrosome-ISOComponent
GO:0005829cytosol-IEAComponent
GO:0005829cytosol-ISOComponent
GO:0005886plasma membrane-IEAComponent
GO:0005886plasma membrane-ISOComponent
GO:0006886intracellular protein transport21873635.IBAProcess
GO:0006968cellular defense response-IEAProcess
GO:0006968cellular defense response-ISOProcess
GO:0007165signal transduction-ISOProcess
GO:0007399nervous system development-ISOProcess
GO:0008589regulation of smoothened signaling pathway-ISOProcess
GO:0010008endosome membrane21873635.IBAComponent
GO:0010008endosome membrane-ISOComponent
GO:0021513spinal cord dorsal/ventral patterning-ISOProcess
GO:0021904dorsal/ventral neural tube patterning-ISOProcess
GO:0030054cell junction-IEAComponent
GO:0030054cell junction-ISOComponent
GO:0032482Rab protein signal transduction21873635.IBAProcess
GO:0042308negative regulation of protein import into nucleus-IEAProcess
GO:0042308negative regulation of protein import into nucleus-ISOProcess
GO:0042733embryonic digit morphogenesis-ISOProcess
GO:0045335phagocytic vesicle-IEAComponent
GO:0045335phagocytic vesicle-ISOComponent
GO:0045861negative regulation of proteolysis-ISOProcess
GO:0046039GTP metabolic process-IEAProcess
GO:0046039GTP metabolic process-ISOProcess
GO:0060271cilium assembly-IEAProcess
GO:0060271cilium assembly-ISOProcess
GO:0097094craniofacial suture morphogenesis-IEAProcess
GO:0097094craniofacial suture morphogenesis-ISOProcess

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