EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012651 (Gene tree)
Gene ID: 362153
Gene Symbol: Cwc22
Alias: LOC362153|RGD1565385
Full Name: CWC22 spliceosome associated protein homolog
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 35092 bases
Position: chr3:64731381-64766472
Accession: 1565385
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000039180	MA3	PF02847.17	1.4e-19	1	1
ENSRNOP00000039180	MIF4G	PF02854.19	1.2e-12	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000037684	-	2625	XM_006234425	ENSRNOP00000039180	874 (aa)	XP_006234487	F1LY38

Gene Model

Click here to download ENSRNOG00000012651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012651's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012651	Cwc22	100	97.943	ENSRNOG00000038322	LOC500684	99	97.943

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012651	Cwc22	99	80.133	ENSG00000163510	CWC22	98	85.226	Homo_sapiens
ENSRNOG00000012651	Cwc22	61	78.261	ENSAPOG00000004200	cwc22	65	75.390	Acanthochromis_polyacanthus
ENSRNOG00000012651	Cwc22	99	82.797	ENSAMEG00000011004	CWC22	99	82.797	Ailuropoda_melanoleuca
ENSRNOG00000012651	Cwc22	65	79.352	ENSACIG00000020055	cwc22	65	79.029	Amphilophus_citrinellus
ENSRNOG00000012651	Cwc22	64	78.657	ENSAPEG00000002673	cwc22	58	78.683	Amphiprion_percula
ENSRNOG00000012651	Cwc22	64	78.731	ENSATEG00000005176	cwc22	60	75.845	Anabas_testudineus
ENSRNOG00000012651	Cwc22	92	67.780	ENSACAG00000009438	CWC22	73	78.082	Anolis_carolinensis
ENSRNOG00000012651	Cwc22	99	81.313	ENSANAG00000028324	CWC22	99	81.313	Aotus_nancymaae
ENSRNOG00000012651	Cwc22	64	78.179	ENSACLG00000025447	cwc22	82	78.547	Astatotilapia_calliptera
ENSRNOG00000012651	Cwc22	99	81.222	ENSBTAG00000021726	CWC22	99	81.000	Bos_taurus
ENSRNOG00000012651	Cwc22	70	48.195	WBGene00002957	let-858	63	52.817	Caenorhabditis_elegans
ENSRNOG00000012651	Cwc22	99	83.241	ENSCAFG00000014160	CWC22	99	83.352	Canis_familiaris
ENSRNOG00000012651	Cwc22	99	82.821	ENSCAFG00020007223	CWC22	91	93.478	Canis_lupus_dingo
ENSRNOG00000012651	Cwc22	99	81.222	ENSCHIG00000017150	CWC22	99	80.889	Capra_hircus
ENSRNOG00000012651	Cwc22	99	82.575	ENSTSYG00000000218	-	99	81.465	Carlito_syrichta
ENSRNOG00000012651	Cwc22	96	75.236	ENSTSYG00000028686	-	98	74.292	Carlito_syrichta
ENSRNOG00000012651	Cwc22	96	72.706	ENSTSYG00000035591	-	99	71.080	Carlito_syrichta
ENSRNOG00000012651	Cwc22	96	71.547	ENSTSYG00000026635	-	96	71.192	Carlito_syrichta
ENSRNOG00000012651	Cwc22	91	78.676	ENSCAPG00000002064	CWC22	96	78.676	Cavia_aperea
ENSRNOG00000012651	Cwc22	99	81.951	ENSCPOG00000007492	CWC22	99	82.063	Cavia_porcellus
ENSRNOG00000012651	Cwc22	99	77.308	ENSCCAG00000021239	CWC22	99	77.308	Cebus_capucinus
ENSRNOG00000012651	Cwc22	99	82.889	ENSCATG00000035788	CWC22	99	81.000	Cercocebus_atys
ENSRNOG00000012651	Cwc22	99	83.072	ENSCLAG00000011118	CWC22	99	83.072	Chinchilla_lanigera
ENSRNOG00000012651	Cwc22	99	81.000	ENSCSAG00000012925	CWC22	99	81.111	Chlorocebus_sabaeus
ENSRNOG00000012651	Cwc22	88	79.604	ENSCHOG00000006362	CWC22	87	79.756	Choloepus_hoffmanni
ENSRNOG00000012651	Cwc22	96	68.643	ENSCPBG00000001765	CWC22	99	69.444	Chrysemys_picta_bellii
ENSRNOG00000012651	Cwc22	60	64.652	ENSCING00000008865	-	71	65.766	Ciona_intestinalis
ENSRNOG00000012651	Cwc22	61	64.781	ENSCSAVG00000003537	-	76	72.500	Ciona_savignyi
ENSRNOG00000012651	Cwc22	99	80.889	ENSCANG00000013762	CWC22	99	80.889	Colobus_angolensis_palliatus
ENSRNOG00000012651	Cwc22	99	89.766	ENSCGRG00001017005	-	99	89.766	Cricetulus_griseus_chok1gshd
ENSRNOG00000012651	Cwc22	99	89.766	ENSCGRG00000001934	-	99	89.766	Cricetulus_griseus_crigri
ENSRNOG00000012651	Cwc22	61	72.222	ENSCSEG00000005257	cwc22	63	69.896	Cynoglossus_semilaevis
ENSRNOG00000012651	Cwc22	64	78.547	ENSCVAG00000009836	cwc22	60	74.637	Cyprinodon_variegatus
ENSRNOG00000012651	Cwc22	64	77.108	ENSDARG00000014008	cwc22	88	62.918	Danio_rerio
ENSRNOG00000012651	Cwc22	66	69.849	ENSDNOG00000032640	-	88	64.067	Dasypus_novemcinctus
ENSRNOG00000012651	Cwc22	99	81.527	ENSDNOG00000003020	-	99	80.642	Dasypus_novemcinctus
ENSRNOG00000012651	Cwc22	99	81.989	ENSDORG00000011483	-	99	81.436	Dipodomys_ordii
ENSRNOG00000012651	Cwc22	73	78.116	ENSETEG00000013355	CWC22	92	78.116	Echinops_telfairi
ENSRNOG00000012651	Cwc22	99	82.797	ENSEASG00005022287	CWC22	99	81.354	Equus_asinus_asinus
ENSRNOG00000012651	Cwc22	99	82.908	ENSECAG00000010769	CWC22	99	81.576	Equus_caballus
ENSRNOG00000012651	Cwc22	78	86.926	ENSEEUG00000005336	CWC22	77	86.926	Erinaceus_europaeus
ENSRNOG00000012651	Cwc22	92	63.349	ENSELUG00000010536	cwc22	92	74.570	Esox_lucius
ENSRNOG00000012651	Cwc22	99	82.464	ENSFCAG00000018982	CWC22	99	82.464	Felis_catus
ENSRNOG00000012651	Cwc22	95	68.866	ENSFALG00000003495	CWC22	98	67.259	Ficedula_albicollis
ENSRNOG00000012651	Cwc22	99	79.775	ENSFDAG00000010857	CWC22	99	80.899	Fukomys_damarensis
ENSRNOG00000012651	Cwc22	59	81.818	ENSFHEG00000009620	cwc22	62	74.560	Fundulus_heteroclitus
ENSRNOG00000012651	Cwc22	69	74.363	ENSGMOG00000009084	cwc22	93	75.167	Gadus_morhua
ENSRNOG00000012651	Cwc22	100	65.339	ENSGALG00000009001	CWC22	99	66.089	Gallus_gallus
ENSRNOG00000012651	Cwc22	64	79.304	ENSGAFG00000021155	cwc22	75	73.997	Gambusia_affinis
ENSRNOG00000012651	Cwc22	64	77.625	ENSGACG00000002071	cwc22	69	77.470	Gasterosteus_aculeatus
ENSRNOG00000012651	Cwc22	98	68.687	ENSGAGG00000013471	CWC22	99	68.293	Gopherus_agassizii
ENSRNOG00000012651	Cwc22	99	80.355	ENSGGOG00000012484	CWC22	99	80.466	Gorilla_gorilla
ENSRNOG00000012651	Cwc22	62	77.385	ENSHBUG00000010504	cwc22	63	78.276	Haplochromis_burtoni
ENSRNOG00000012651	Cwc22	99	81.859	ENSHGLG00000005692	CWC22	99	82.195	Heterocephalus_glaber_female
ENSRNOG00000012651	Cwc22	99	81.859	ENSHGLG00100016497	CWC22	99	82.195	Heterocephalus_glaber_male
ENSRNOG00000012651	Cwc22	66	75.462	ENSHCOG00000004206	cwc22	80	69.819	Hippocampus_comes
ENSRNOG00000012651	Cwc22	88	67.213	ENSIPUG00000005831	cwc22	67	74.238	Ictalurus_punctatus
ENSRNOG00000012651	Cwc22	99	83.982	ENSSTOG00000009788	CWC22	99	84.205	Ictidomys_tridecemlineatus
ENSRNOG00000012651	Cwc22	99	82.131	ENSJJAG00000017012	-	99	82.575	Jaculus_jaculus
ENSRNOG00000012651	Cwc22	64	79.443	ENSKMAG00000005228	cwc22	57	78.634	Kryptolebias_marmoratus
ENSRNOG00000012651	Cwc22	64	78.584	ENSLBEG00000020518	cwc22	74	71.205	Labrus_bergylta
ENSRNOG00000012651	Cwc22	91	65.617	ENSLOCG00000006456	cwc22	87	64.203	Lepisosteus_oculatus
ENSRNOG00000012651	Cwc22	99	79.075	ENSLAFG00000014802	CWC22	99	79.185	Loxodonta_africana
ENSRNOG00000012651	Cwc22	99	81.646	ENSMFAG00000000590	CWC22	99	81.758	Macaca_fascicularis
ENSRNOG00000012651	Cwc22	99	76.889	ENSMMUG00000020642	CWC22	99	76.889	Macaca_mulatta
ENSRNOG00000012651	Cwc22	99	81.646	ENSMNEG00000034567	CWC22	99	81.758	Macaca_nemestrina
ENSRNOG00000012651	Cwc22	99	81.111	ENSMLEG00000042344	CWC22	99	81.222	Mandrillus_leucophaeus
ENSRNOG00000012651	Cwc22	68	75.980	ENSMAMG00000018888	cwc22	61	74.051	Mastacembelus_armatus
ENSRNOG00000012651	Cwc22	64	78.866	ENSMZEG00005021449	cwc22	63	74.198	Maylandia_zebra
ENSRNOG00000012651	Cwc22	95	66.893	ENSMGAG00000009220	CWC22	100	66.999	Meleagris_gallopavo
ENSRNOG00000012651	Cwc22	79	85.180	ENSMAUG00000016154	-	95	85.180	Mesocricetus_auratus
ENSRNOG00000012651	Cwc22	99	81.687	ENSMICG00000016919	CWC22	99	81.687	Microcebus_murinus
ENSRNOG00000012651	Cwc22	67	70.936	ENSMMOG00000019720	cwc22	89	70.110	Mola_mola
ENSRNOG00000012651	Cwc22	61	82.552	ENSMODG00000003711	-	100	82.364	Monodelphis_domestica
ENSRNOG00000012651	Cwc22	100	72.647	ENSMODG00000010233	-	99	72.727	Monodelphis_domestica
ENSRNOG00000012651	Cwc22	61	82.617	ENSMODG00000020117	-	100	82.430	Monodelphis_domestica
ENSRNOG00000012651	Cwc22	99	92.402	MGP_CAROLIEiJ_G0023696	-	99	92.402	Mus_caroli
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000096484	Gm13696	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000096729	Gm13695	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000079247	Gm13691	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000094125	Gm13698	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000096337	Gm13694	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	100	90.597	ENSMUSG00000027014	Cwc22	99	90.376	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000095824	Gm13697	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	91	87.698	ENSMUSG00000094336	Gm13693	97	88.533	Mus_musculus
ENSRNOG00000012651	Cwc22	100	90.757	MGP_PahariEiJ_G0025147	-	99	91.203	Mus_pahari
ENSRNOG00000012651	Cwc22	99	81.556	ENSMPUG00000002432	CWC22	99	82.444	Mustela_putorius_furo
ENSRNOG00000012651	Cwc22	85	83.007	ENSMLUG00000024966	-	96	84.314	Myotis_lucifugus
ENSRNOG00000012651	Cwc22	89	82.776	ENSMLUG00000013437	-	98	82.303	Myotis_lucifugus
ENSRNOG00000012651	Cwc22	100	74.254	ENSNGAG00000013881	-	96	88.982	Nannospalax_galili
ENSRNOG00000012651	Cwc22	99	80.577	ENSNLEG00000006248	CWC22	99	80.577	Nomascus_leucogenys
ENSRNOG00000012651	Cwc22	62	79.893	ENSMEUG00000011026	CWC22	99	80.108	Notamacropus_eugenii
ENSRNOG00000012651	Cwc22	74	83.037	ENSOPRG00000007844	CWC22	83	84.330	Ochotona_princeps
ENSRNOG00000012651	Cwc22	62	89.084	ENSODEG00000007673	CWC22	92	88.610	Octodon_degus
ENSRNOG00000012651	Cwc22	58	91.518	ENSODEG00000005934	-	81	90.949	Octodon_degus
ENSRNOG00000012651	Cwc22	97	70.971	ENSOANG00000008649	CWC22	100	73.177	Ornithorhynchus_anatinus
ENSRNOG00000012651	Cwc22	66	76.333	ENSORLG00000010538	cwc22	68	73.344	Oryzias_latipes
ENSRNOG00000012651	Cwc22	66	76.333	ENSORLG00020015117	cwc22	68	73.344	Oryzias_latipes_hni
ENSRNOG00000012651	Cwc22	67	75.868	ENSORLG00015018073	cwc22	68	73.344	Oryzias_latipes_hsok
ENSRNOG00000012651	Cwc22	64	78.756	ENSOMEG00000015199	cwc22	59	81.703	Oryzias_melastigma
ENSRNOG00000012651	Cwc22	100	82.373	ENSOGAG00000015287	CWC22	99	82.353	Otolemur_garnettii
ENSRNOG00000012651	Cwc22	99	81.111	ENSOARG00000016905	CWC22	99	80.778	Ovis_aries
ENSRNOG00000012651	Cwc22	99	80.222	ENSPPAG00000027833	CWC22	99	80.333	Pan_paniscus
ENSRNOG00000012651	Cwc22	99	82.575	ENSPPRG00000001389	CWC22	99	82.575	Panthera_pardus
ENSRNOG00000012651	Cwc22	99	82.686	ENSPTIG00000019139	CWC22	99	82.686	Panthera_tigris_altaica
ENSRNOG00000012651	Cwc22	99	80.466	ENSPTRG00000012698	CWC22	99	80.577	Pan_troglodytes
ENSRNOG00000012651	Cwc22	99	81.111	ENSPANG00000018976	CWC22	99	81.222	Papio_anubis
ENSRNOG00000012651	Cwc22	89	66.419	ENSPKIG00000021346	cwc22	68	76.361	Paramormyrops_kingsleyae
ENSRNOG00000012651	Cwc22	98	67.982	ENSPSIG00000008632	CWC22	99	68.958	Pelodiscus_sinensis
ENSRNOG00000012651	Cwc22	60	83.946	ENSPMGG00000020129	cwc22	58	75.135	Periophthalmus_magnuspinnatus
ENSRNOG00000012651	Cwc22	100	77.985	ENSPEMG00000023936	-	99	78.009	Peromyscus_maniculatus_bairdii
ENSRNOG00000012651	Cwc22	91	64.662	ENSPMAG00000005914	cwc22	91	64.713	Petromyzon_marinus
ENSRNOG00000012651	Cwc22	100	73.778	ENSPCIG00000009903	-	100	75.915	Phascolarctos_cinereus
ENSRNOG00000012651	Cwc22	61	81.769	ENSPFOG00000015025	cwc22	87	72.139	Poecilia_formosa
ENSRNOG00000012651	Cwc22	61	82.332	ENSPLAG00000021405	cwc22	61	74.960	Poecilia_latipinna
ENSRNOG00000012651	Cwc22	61	81.769	ENSPMEG00000007850	cwc22	61	74.799	Poecilia_mexicana
ENSRNOG00000012651	Cwc22	64	76.768	ENSPREG00000004312	cwc22	73	74.839	Poecilia_reticulata
ENSRNOG00000012651	Cwc22	99	80.466	ENSPPYG00000012986	CWC22	99	80.577	Pongo_abelii
ENSRNOG00000012651	Cwc22	99	79.287	ENSPCAG00000011882	CWC22	99	78.953	Procavia_capensis
ENSRNOG00000012651	Cwc22	92	87.027	ENSPCOG00000010195	CWC22	99	68.625	Propithecus_coquereli
ENSRNOG00000012651	Cwc22	99	80.534	ENSPVAG00000011497	CWC22	99	81.313	Pteropus_vampyrus
ENSRNOG00000012651	Cwc22	64	75.258	ENSPNYG00000010435	cwc22	82	75.606	Pundamilia_nyererei
ENSRNOG00000012651	Cwc22	99	76.812	ENSRBIG00000036751	CWC22	99	76.523	Rhinopithecus_bieti
ENSRNOG00000012651	Cwc22	99	80.889	ENSRROG00000037520	CWC22	99	81.000	Rhinopithecus_roxellana
ENSRNOG00000012651	Cwc22	54	30.738	YGR278W	-	84	30.237	Saccharomyces_cerevisiae
ENSRNOG00000012651	Cwc22	99	82.708	ENSSBOG00000021683	CWC22	99	81.911	Saimiri_boliviensis_boliviensis
ENSRNOG00000012651	Cwc22	72	69.290	ENSSHAG00000004040	-	88	68.210	Sarcophilus_harrisii
ENSRNOG00000012651	Cwc22	97	74.007	ENSSHAG00000016596	-	99	74.007	Sarcophilus_harrisii
ENSRNOG00000012651	Cwc22	55	81.466	ENSSFOG00015010559	cwc22	62	78.906	Scleropages_formosus
ENSRNOG00000012651	Cwc22	64	75.215	ENSSMAG00000004724	cwc22	65	70.382	Scophthalmus_maximus
ENSRNOG00000012651	Cwc22	65	78.157	ENSSDUG00000010656	cwc22	61	75.121	Seriola_dumerili
ENSRNOG00000012651	Cwc22	62	78.966	ENSSLDG00000023157	cwc22	81	78.049	Seriola_lalandi_dorsalis
ENSRNOG00000012651	Cwc22	66	98.295	ENSSARG00000013596	-	64	98.295	Sorex_araneus
ENSRNOG00000012651	Cwc22	97	65.068	ENSSPUG00000006395	CWC22	99	66.096	Sphenodon_punctatus
ENSRNOG00000012651	Cwc22	64	78.657	ENSSPAG00000008746	cwc22	62	75.360	Stegastes_partitus
ENSRNOG00000012651	Cwc22	99	81.707	ENSSSCG00000016008	CWC22	99	81.375	Sus_scrofa
ENSRNOG00000012651	Cwc22	97	68.451	ENSTGUG00000009340	-	99	67.845	Taeniopygia_guttata
ENSRNOG00000012651	Cwc22	67	75.164	ENSTRUG00000014411	cwc22	65	74.127	Takifugu_rubripes
ENSRNOG00000012651	Cwc22	60	77.020	ENSTNIG00000005074	cwc22	74	76.512	Tetraodon_nigroviridis
ENSRNOG00000012651	Cwc22	96	67.705	ENSTBEG00000014539	CWC22	95	66.090	Tupaia_belangeri
ENSRNOG00000012651	Cwc22	99	80.089	ENSTTRG00000012142	CWC22	99	80.089	Tursiops_truncatus
ENSRNOG00000012651	Cwc22	99	82.614	ENSUAMG00000010342	CWC22	99	82.594	Ursus_americanus
ENSRNOG00000012651	Cwc22	99	82.797	ENSUMAG00000016730	CWC22	99	82.797	Ursus_maritimus
ENSRNOG00000012651	Cwc22	73	89.650	ENSVPAG00000008565	CWC22	72	89.802	Vicugna_pacos
ENSRNOG00000012651	Cwc22	99	83.000	ENSVVUG00000009738	CWC22	99	83.111	Vulpes_vulpes
ENSRNOG00000012651	Cwc22	82	71.930	ENSXETG00000014099	cwc22	84	76.733	Xenopus_tropicalis
ENSRNOG00000012651	Cwc22	61	80.866	ENSXMAG00000013201	cwc22	62	74.322	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003723	RNA binding	21873635.	IBA	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005634	nucleus	-	ISO	Component
GO:0005681	spliceosomal complex	-	ISO	Component
GO:0005829	cytosol	-	ISO	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071006	U2-type catalytic step 1 spliceosome	21873635.	IBA	Component
GO:0071006	U2-type catalytic step 1 spliceosome	-	ISO	Component
GO:0071007	U2-type catalytic step 2 spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component