EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012664 (Gene tree)
Gene ID: 313245
Gene Symbol: Polr1e
Alias: LOC313245|Praf1|RGD1565773
Full Name: RNA polymerase I subunit E
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 15664 bases
Position: chr5:60572577-60588240
Accession: 1565773
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000029128	RNA_pol_I_A49	PF06870.12	2.2e-102	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000092796	-	684	-	-	- (aa)	-	-
ENSRNOT00000092827	-	2166	-	-	- (aa)	-	-
ENSRNOT00000092958	-	1683	-	ENSRNOP00000075957	162 (aa)	-	A0A1B0GWN1
ENSRNOT00000093042	-	713	-	-	- (aa)	-	-
ENSRNOT00000029704	-	1572	XM_008763673	ENSRNOP00000029128	434 (aa)	-	B0BN64

Gene Model

Click here to download ENSRNOG00000012664's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03020	RNA polymerase	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012664's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012664	Polr1e	96	78.606	ENSG00000137054	POLR1E	99	78.606	Homo_sapiens
ENSRNOG00000012664	Polr1e	95	41.063	ENSAPOG00000012452	polr1e	99	41.063	Acanthochromis_polyacanthus
ENSRNOG00000012664	Polr1e	100	71.042	ENSAMEG00000010193	POLR1E	100	71.042	Ailuropoda_melanoleuca
ENSRNOG00000012664	Polr1e	91	42.469	ENSACIG00000009884	polr1e	99	42.386	Amphilophus_citrinellus
ENSRNOG00000012664	Polr1e	95	43.961	ENSAOCG00000005665	polr1e	99	43.961	Amphiprion_ocellaris
ENSRNOG00000012664	Polr1e	95	43.720	ENSAPEG00000020581	polr1e	99	43.720	Amphiprion_percula
ENSRNOG00000012664	Polr1e	93	45.098	ENSATEG00000020609	polr1e	98	45.098	Anabas_testudineus
ENSRNOG00000012664	Polr1e	77	53.806	ENSAPLG00000010340	POLR1E	100	53.806	Anas_platyrhynchos
ENSRNOG00000012664	Polr1e	96	77.885	ENSANAG00000038046	POLR1E	99	77.885	Aotus_nancymaae
ENSRNOG00000012664	Polr1e	95	43.237	ENSACLG00000013685	polr1e	99	42.959	Astatotilapia_calliptera
ENSRNOG00000012664	Polr1e	94	41.019	ENSAMXG00000018181	polr1e	98	41.019	Astyanax_mexicanus
ENSRNOG00000012664	Polr1e	96	81.055	ENSBTAG00000012243	POLR1E	99	81.055	Bos_taurus
ENSRNOG00000012664	Polr1e	91	72.589	ENSCJAG00000010512	POLR1E	93	76.550	Callithrix_jacchus
ENSRNOG00000012664	Polr1e	96	80.769	ENSCAFG00000002377	POLR1E	99	80.769	Canis_familiaris
ENSRNOG00000012664	Polr1e	96	81.010	ENSCAFG00020017851	POLR1E	99	81.010	Canis_lupus_dingo
ENSRNOG00000012664	Polr1e	96	79.808	ENSCHIG00000019479	POLR1E	99	79.808	Capra_hircus
ENSRNOG00000012664	Polr1e	96	78.230	ENSTSYG00000002075	POLR1E	99	78.230	Carlito_syrichta
ENSRNOG00000012664	Polr1e	66	82.639	ENSCAPG00000015653	POLR1E	99	82.639	Cavia_aperea
ENSRNOG00000012664	Polr1e	96	83.614	ENSCPOG00000009965	POLR1E	99	83.614	Cavia_porcellus
ENSRNOG00000012664	Polr1e	96	70.673	ENSCCAG00000029460	POLR1E	99	70.673	Cebus_capucinus
ENSRNOG00000012664	Polr1e	96	78.365	ENSCATG00000031732	POLR1E	99	78.365	Cercocebus_atys
ENSRNOG00000012664	Polr1e	86	82.038	ENSCLAG00000012701	POLR1E	98	82.038	Chinchilla_lanigera
ENSRNOG00000012664	Polr1e	96	77.885	ENSCSAG00000010782	POLR1E	99	77.885	Chlorocebus_sabaeus
ENSRNOG00000012664	Polr1e	91	70.051	ENSCHOG00000013024	POLR1E	83	70.051	Choloepus_hoffmanni
ENSRNOG00000012664	Polr1e	95	64.964	ENSCPBG00000006923	POLR1E	99	64.964	Chrysemys_picta_bellii
ENSRNOG00000012664	Polr1e	96	77.885	ENSCANG00000036112	POLR1E	99	77.885	Colobus_angolensis_palliatus
ENSRNOG00000012664	Polr1e	100	89.401	ENSCGRG00001006197	Polr1e	100	89.401	Cricetulus_griseus_chok1gshd
ENSRNOG00000012664	Polr1e	100	88.940	ENSCGRG00000006430	Polr1e	100	88.940	Cricetulus_griseus_crigri
ENSRNOG00000012664	Polr1e	94	41.505	ENSCSEG00000005121	polr1e	99	41.505	Cynoglossus_semilaevis
ENSRNOG00000012664	Polr1e	93	40.976	ENSCVAG00000019759	polr1e	98	40.976	Cyprinodon_variegatus
ENSRNOG00000012664	Polr1e	91	42.500	ENSDARG00000006434	polr1e	99	42.131	Danio_rerio
ENSRNOG00000012664	Polr1e	95	70.716	ENSDNOG00000010257	POLR1E	99	70.716	Dasypus_novemcinctus
ENSRNOG00000012664	Polr1e	69	86.486	ENSDORG00000026463	-	85	87.273	Dipodomys_ordii
ENSRNOG00000012664	Polr1e	82	76.056	ENSETEG00000018204	POLR1E	99	76.056	Echinops_telfairi
ENSRNOG00000012664	Polr1e	96	79.567	ENSEASG00005000675	POLR1E	99	79.567	Equus_asinus_asinus
ENSRNOG00000012664	Polr1e	96	79.808	ENSECAG00000014669	POLR1E	99	79.808	Equus_caballus
ENSRNOG00000012664	Polr1e	91	69.289	ENSEEUG00000011928	POLR1E	84	69.289	Erinaceus_europaeus
ENSRNOG00000012664	Polr1e	93	45.343	ENSELUG00000008150	polr1e	97	45.343	Esox_lucius
ENSRNOG00000012664	Polr1e	96	79.808	ENSFCAG00000013081	POLR1E	99	79.808	Felis_catus
ENSRNOG00000012664	Polr1e	91	57.614	ENSFALG00000012950	POLR1E	99	57.614	Ficedula_albicollis
ENSRNOG00000012664	Polr1e	96	84.096	ENSFDAG00000016917	POLR1E	99	84.096	Fukomys_damarensis
ENSRNOG00000012664	Polr1e	95	42.308	ENSFHEG00000009801	polr1e	99	42.308	Fundulus_heteroclitus
ENSRNOG00000012664	Polr1e	90	38.945	ENSGMOG00000003336	POLR1E	93	38.945	Gadus_morhua
ENSRNOG00000012664	Polr1e	95	59.420	ENSGALG00000005395	POLR1E	100	59.420	Gallus_gallus
ENSRNOG00000012664	Polr1e	93	42.298	ENSGAFG00000004850	polr1e	98	42.298	Gambusia_affinis
ENSRNOG00000012664	Polr1e	93	40.876	ENSGACG00000016087	polr1e	98	40.876	Gasterosteus_aculeatus
ENSRNOG00000012664	Polr1e	94	57.457	ENSGAGG00000001659	POLR1E	99	56.784	Gopherus_agassizii
ENSRNOG00000012664	Polr1e	96	78.365	ENSGGOG00000001882	POLR1E	99	80.833	Gorilla_gorilla
ENSRNOG00000012664	Polr1e	95	43.237	ENSHBUG00000002559	polr1e	99	42.959	Haplochromis_burtoni
ENSRNOG00000012664	Polr1e	96	82.892	ENSHGLG00000002036	POLR1E	99	82.892	Heterocephalus_glaber_female
ENSRNOG00000012664	Polr1e	96	83.133	ENSHGLG00100012784	POLR1E	99	83.133	Heterocephalus_glaber_male
ENSRNOG00000012664	Polr1e	93	41.912	ENSHCOG00000002774	polr1e	98	42.157	Hippocampus_comes
ENSRNOG00000012664	Polr1e	94	41.505	ENSIPUG00000003019	polr1e	98	41.505	Ictalurus_punctatus
ENSRNOG00000012664	Polr1e	96	79.808	ENSSTOG00000009810	POLR1E	99	79.808	Ictidomys_tridecemlineatus
ENSRNOG00000012664	Polr1e	100	81.567	ENSJJAG00000020731	Polr1e	100	81.567	Jaculus_jaculus
ENSRNOG00000012664	Polr1e	95	41.205	ENSKMAG00000000046	polr1e	99	41.205	Kryptolebias_marmoratus
ENSRNOG00000012664	Polr1e	96	44.365	ENSLBEG00000003104	polr1e	99	44.231	Labrus_bergylta
ENSRNOG00000012664	Polr1e	83	62.155	ENSLACG00000003416	POLR1E	100	62.155	Latimeria_chalumnae
ENSRNOG00000012664	Polr1e	96	50.478	ENSLOCG00000012859	polr1e	99	50.478	Lepisosteus_oculatus
ENSRNOG00000012664	Polr1e	97	77.910	ENSLAFG00000012831	POLR1E	100	77.910	Loxodonta_africana
ENSRNOG00000012664	Polr1e	98	77.465	ENSMFAG00000045465	POLR1E	99	77.778	Macaca_fascicularis
ENSRNOG00000012664	Polr1e	96	78.365	ENSMMUG00000017892	POLR1E	99	78.365	Macaca_mulatta
ENSRNOG00000012664	Polr1e	96	72.000	ENSMNEG00000040283	POLR1E	99	78.319	Macaca_nemestrina
ENSRNOG00000012664	Polr1e	96	78.365	ENSMLEG00000031135	POLR1E	99	78.365	Mandrillus_leucophaeus
ENSRNOG00000012664	Polr1e	93	42.157	ENSMAMG00000001260	polr1e	97	42.157	Mastacembelus_armatus
ENSRNOG00000012664	Polr1e	96	43.198	ENSMZEG00005021536	polr1e	99	43.198	Maylandia_zebra
ENSRNOG00000012664	Polr1e	100	88.710	ENSMAUG00000021044	Polr1e	100	88.710	Mesocricetus_auratus
ENSRNOG00000012664	Polr1e	96	78.846	ENSMICG00000003673	POLR1E	99	78.846	Microcebus_murinus
ENSRNOG00000012664	Polr1e	100	88.479	ENSMOCG00000012920	Polr1e	100	88.479	Microtus_ochrogaster
ENSRNOG00000012664	Polr1e	93	43.659	ENSMMOG00000007391	polr1e	98	43.659	Mola_mola
ENSRNOG00000012664	Polr1e	91	69.192	ENSMODG00000002884	POLR1E	97	69.192	Monodelphis_domestica
ENSRNOG00000012664	Polr1e	96	42.721	ENSMALG00000002665	polr1e	99	42.721	Monopterus_albus
ENSRNOG00000012664	Polr1e	100	88.710	MGP_CAROLIEiJ_G0025967	Polr1e	100	88.710	Mus_caroli
ENSRNOG00000012664	Polr1e	100	89.631	ENSMUSG00000028318	Polr1e	100	89.631	Mus_musculus
ENSRNOG00000012664	Polr1e	99	90.993	MGP_PahariEiJ_G0024114	Polr1e	99	90.993	Mus_pahari
ENSRNOG00000012664	Polr1e	100	89.401	MGP_SPRETEiJ_G0026930	Polr1e	100	89.401	Mus_spretus
ENSRNOG00000012664	Polr1e	97	71.762	ENSMPUG00000006040	POLR1E	100	71.762	Mustela_putorius_furo
ENSRNOG00000012664	Polr1e	99	77.570	ENSMLUG00000012688	POLR1E	99	77.570	Myotis_lucifugus
ENSRNOG00000012664	Polr1e	100	83.410	ENSNGAG00000002520	Polr1e	100	83.410	Nannospalax_galili
ENSRNOG00000012664	Polr1e	95	43.478	ENSNBRG00000016822	polr1e	98	43.478	Neolamprologus_brichardi
ENSRNOG00000012664	Polr1e	96	78.125	ENSNLEG00000003616	POLR1E	99	80.833	Nomascus_leucogenys
ENSRNOG00000012664	Polr1e	70	77.500	ENSMEUG00000015372	-	80	77.500	Notamacropus_eugenii
ENSRNOG00000012664	Polr1e	83	69.916	ENSOPRG00000014206	POLR1E	100	69.916	Ochotona_princeps
ENSRNOG00000012664	Polr1e	99	82.243	ENSODEG00000014565	POLR1E	99	82.243	Octodon_degus
ENSRNOG00000012664	Polr1e	98	42.857	ENSONIG00000008921	polr1e	99	43.437	Oreochromis_niloticus
ENSRNOG00000012664	Polr1e	80	57.364	ENSOANG00000021091	-	90	63.429	Ornithorhynchus_anatinus
ENSRNOG00000012664	Polr1e	96	79.808	ENSOCUG00000024773	POLR1E	99	79.808	Oryctolagus_cuniculus
ENSRNOG00000012664	Polr1e	96	40.855	ENSORLG00000005143	polr1e	99	41.063	Oryzias_latipes
ENSRNOG00000012664	Polr1e	90	39.340	ENSORLG00020007271	polr1e	99	41.085	Oryzias_latipes_hni
ENSRNOG00000012664	Polr1e	95	40.821	ENSORLG00015000137	polr1e	99	40.821	Oryzias_latipes_hsok
ENSRNOG00000012664	Polr1e	96	39.905	ENSOMEG00000013264	polr1e	99	39.905	Oryzias_melastigma
ENSRNOG00000012664	Polr1e	98	79.343	ENSOGAG00000012981	POLR1E	99	79.343	Otolemur_garnettii
ENSRNOG00000012664	Polr1e	99	78.322	ENSOARG00000011465	POLR1E	99	78.322	Ovis_aries
ENSRNOG00000012664	Polr1e	96	78.365	ENSPPAG00000034566	POLR1E	99	81.667	Pan_paniscus
ENSRNOG00000012664	Polr1e	96	79.808	ENSPPRG00000005649	POLR1E	99	79.808	Panthera_pardus
ENSRNOG00000012664	Polr1e	96	79.567	ENSPTIG00000009774	POLR1E	99	79.567	Panthera_tigris_altaica
ENSRNOG00000012664	Polr1e	96	78.365	ENSPTRG00000020944	POLR1E	99	81.667	Pan_troglodytes
ENSRNOG00000012664	Polr1e	96	78.365	ENSPANG00000025563	POLR1E	99	78.365	Papio_anubis
ENSRNOG00000012664	Polr1e	95	45.215	ENSPKIG00000003562	polr1e	99	45.215	Paramormyrops_kingsleyae
ENSRNOG00000012664	Polr1e	91	60.957	ENSPSIG00000003274	POLR1E	92	60.957	Pelodiscus_sinensis
ENSRNOG00000012664	Polr1e	91	42.786	ENSPMGG00000024169	polr1e	96	42.786	Periophthalmus_magnuspinnatus
ENSRNOG00000012664	Polr1e	100	74.023	ENSPEMG00000022300	-	100	74.023	Peromyscus_maniculatus_bairdii
ENSRNOG00000012664	Polr1e	100	90.323	ENSPEMG00000019151	-	100	90.323	Peromyscus_maniculatus_bairdii
ENSRNOG00000012664	Polr1e	91	70.960	ENSPCIG00000014798	POLR1E	97	70.960	Phascolarctos_cinereus
ENSRNOG00000012664	Polr1e	96	40.449	ENSPFOG00000019627	polr1e	99	40.449	Poecilia_formosa
ENSRNOG00000012664	Polr1e	95	42.512	ENSPLAG00000022679	polr1e	99	42.512	Poecilia_latipinna
ENSRNOG00000012664	Polr1e	82	42.778	ENSPMEG00000022123	polr1e	93	42.778	Poecilia_mexicana
ENSRNOG00000012664	Polr1e	93	42.402	ENSPREG00000009470	polr1e	98	42.402	Poecilia_reticulata
ENSRNOG00000012664	Polr1e	96	77.885	ENSPPYG00000019061	POLR1E	99	77.885	Pongo_abelii
ENSRNOG00000012664	Polr1e	54	77.966	ENSPCAG00000004891	POLR1E	77	77.966	Procavia_capensis
ENSRNOG00000012664	Polr1e	96	78.846	ENSPCOG00000027448	POLR1E	99	78.846	Propithecus_coquereli
ENSRNOG00000012664	Polr1e	91	81.726	ENSPVAG00000007940	POLR1E	83	81.726	Pteropus_vampyrus
ENSRNOG00000012664	Polr1e	96	42.959	ENSPNYG00000001032	polr1e	99	42.959	Pundamilia_nyererei
ENSRNOG00000012664	Polr1e	91	41.310	ENSPNAG00000006987	polr1e	95	41.310	Pygocentrus_nattereri
ENSRNOG00000012664	Polr1e	93	76.543	ENSRBIG00000034214	POLR1E	100	77.428	Rhinopithecus_bieti
ENSRNOG00000012664	Polr1e	96	77.885	ENSRROG00000031986	POLR1E	99	77.885	Rhinopithecus_roxellana
ENSRNOG00000012664	Polr1e	96	76.683	ENSSBOG00000021415	POLR1E	99	76.683	Saimiri_boliviensis_boliviensis
ENSRNOG00000012664	Polr1e	83	68.056	ENSSHAG00000016084	POLR1E	100	68.056	Sarcophilus_harrisii
ENSRNOG00000012664	Polr1e	94	45.366	ENSSFOG00015002293	polr1e	98	45.366	Scleropages_formosus
ENSRNOG00000012664	Polr1e	96	45.107	ENSSMAG00000011672	polr1e	93	45.107	Scophthalmus_maximus
ENSRNOG00000012664	Polr1e	93	44.118	ENSSDUG00000022279	polr1e	97	44.118	Seriola_dumerili
ENSRNOG00000012664	Polr1e	93	43.873	ENSSLDG00000024918	polr1e	97	43.873	Seriola_lalandi_dorsalis
ENSRNOG00000012664	Polr1e	62	68.571	ENSSARG00000009810	-	67	68.571	Sorex_araneus
ENSRNOG00000012664	Polr1e	95	63.196	ENSSPUG00000009499	POLR1E	99	63.196	Sphenodon_punctatus
ENSRNOG00000012664	Polr1e	95	44.444	ENSSPAG00000021240	polr1e	99	44.444	Stegastes_partitus
ENSRNOG00000012664	Polr1e	96	81.490	ENSSSCG00000005347	POLR1E	99	81.490	Sus_scrofa
ENSRNOG00000012664	Polr1e	91	49.550	ENSTGUG00000007169	POLR1E	100	49.550	Taeniopygia_guttata
ENSRNOG00000012664	Polr1e	95	41.866	ENSTRUG00000020779	polr1e	99	42.782	Takifugu_rubripes
ENSRNOG00000012664	Polr1e	93	42.787	ENSTNIG00000017812	polr1e	98	42.787	Tetraodon_nigroviridis
ENSRNOG00000012664	Polr1e	97	77.488	ENSTBEG00000013786	POLR1E	89	77.488	Tupaia_belangeri
ENSRNOG00000012664	Polr1e	91	81.108	ENSTTRG00000008294	POLR1E	84	81.108	Tursiops_truncatus
ENSRNOG00000012664	Polr1e	96	80.769	ENSUAMG00000012474	POLR1E	99	81.593	Ursus_americanus
ENSRNOG00000012664	Polr1e	96	80.769	ENSUMAG00000011496	POLR1E	99	80.769	Ursus_maritimus
ENSRNOG00000012664	Polr1e	79	75.660	ENSVPAG00000009048	POLR1E	81	75.660	Vicugna_pacos
ENSRNOG00000012664	Polr1e	96	81.010	ENSVVUG00000019954	POLR1E	99	81.010	Vulpes_vulpes
ENSRNOG00000012664	Polr1e	95	48.792	ENSXETG00000006533	polr1e	99	48.792	Xenopus_tropicalis
ENSRNOG00000012664	Polr1e	93	42.647	ENSXCOG00000013706	polr1e	98	42.157	Xiphophorus_couchianus
ENSRNOG00000012664	Polr1e	93	43.382	ENSXMAG00000012484	polr1e	98	43.382	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001054	RNA polymerase I activity	21873635.	IBA	Function
GO:0001179	RNA polymerase I transcription factor binding	-	IEA	Function
GO:0001179	RNA polymerase I transcription factor binding	-	ISO	Function
GO:0001188	RNA polymerase I preinitiation complex assembly	-	IEA	Process
GO:0001188	RNA polymerase I preinitiation complex assembly	-	ISO	Process
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0003677	DNA binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0005736	RNA polymerase I complex	21873635.	IBA	Component
GO:0005736	RNA polymerase I complex	-	ISO	Component
GO:0006360	transcription by RNA polymerase I	-	IEA	Process
GO:0008150	biological_process	-	ND	Process