EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012716 (Gene tree)
Gene ID: 308738
Gene Symbol: Chd2
Alias: LOC308738
Full Name: chromodomain helicase DNA binding protein 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 113234 bases
Position: chr1:134757934-134871167
Accession: 1310056
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000068303	ResIII	PF04851.15	3e-08	1	1
ENSRNOP00000075309	ResIII	PF04851.15	3e-08	1	1
ENSRNOP00000052684	ResIII	PF04851.15	3e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000055829	-	5505	-	ENSRNOP00000052684	1834 (aa)	-	D4AD08
ENSRNOT00000090149	-	6477	XM_006229369	ENSRNOP00000075309	1840 (aa)	XP_006229431	A0A0G2KA92
ENSRNOT00000076300	-	8964	XM_006229370	ENSRNOP00000068303	1827 (aa)	XP_006229432	A0A096MJY0

Gene Model

Click here to download ENSRNOG00000012716's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012716's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000012716	Chd2	72	65.561	ENSRNOG00000014434	Chd1	94	62.695

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012716	Chd2	100	96.663	ENSG00000173575	CHD2	100	98.246	Homo_sapiens
ENSRNOG00000012716	Chd2	97	71.722	ENSAPOG00000008913	chd2	100	72.273	Acanthochromis_polyacanthus
ENSRNOG00000012716	Chd2	63	97.656	ENSAMEG00000010805	-	100	97.656	Ailuropoda_melanoleuca
ENSRNOG00000012716	Chd2	96	70.291	ENSAOCG00000016332	chd2	100	69.876	Amphiprion_ocellaris
ENSRNOG00000012716	Chd2	97	71.611	ENSAPEG00000016676	chd2	100	72.082	Amphiprion_percula
ENSRNOG00000012716	Chd2	97	71.262	ENSATEG00000005246	chd2	100	71.873	Anabas_testudineus
ENSRNOG00000012716	Chd2	100	87.065	ENSAPLG00000011141	-	100	87.120	Anas_platyrhynchos
ENSRNOG00000012716	Chd2	98	80.176	ENSACAG00000000088	-	99	80.110	Anolis_carolinensis
ENSRNOG00000012716	Chd2	100	96.552	ENSANAG00000024017	-	100	96.552	Aotus_nancymaae
ENSRNOG00000012716	Chd2	100	96.442	ENSCJAG00000020444	-	100	96.442	Callithrix_jacchus
ENSRNOG00000012716	Chd2	100	95.870	ENSCAFG00000010998	CHD2	100	97.317	Canis_familiaris
ENSRNOG00000012716	Chd2	99	93.850	ENSCHIG00000022261	-	99	94.512	Capra_hircus
ENSRNOG00000012716	Chd2	100	96.497	ENSTSYG00000003272	-	100	96.497	Carlito_syrichta
ENSRNOG00000012716	Chd2	93	95.789	ENSCPOG00000005800	-	100	95.789	Cavia_porcellus
ENSRNOG00000012716	Chd2	100	96.552	ENSCCAG00000035304	-	100	96.552	Cebus_capucinus
ENSRNOG00000012716	Chd2	100	96.608	ENSCATG00000031069	-	100	96.608	Cercocebus_atys
ENSRNOG00000012716	Chd2	100	95.569	ENSCLAG00000016269	-	100	95.569	Chinchilla_lanigera
ENSRNOG00000012716	Chd2	100	96.663	ENSCSAG00000017007	-	100	96.663	Chlorocebus_sabaeus
ENSRNOG00000012716	Chd2	78	93.636	ENSCHOG00000000608	-	81	93.636	Choloepus_hoffmanni
ENSRNOG00000012716	Chd2	81	87.200	ENSCPBG00000018049	-	95	91.325	Chrysemys_picta_bellii
ENSRNOG00000012716	Chd2	74	54.197	ENSCSAVG00000007580	-	93	60.000	Ciona_savignyi
ENSRNOG00000012716	Chd2	100	96.554	ENSCANG00000038126	-	100	96.554	Colobus_angolensis_palliatus
ENSRNOG00000012716	Chd2	100	97.865	ENSCGRG00001006649	Chd2	100	97.865	Cricetulus_griseus_chok1gshd
ENSRNOG00000012716	Chd2	100	97.865	ENSCGRG00000018154	Chd2	100	97.865	Cricetulus_griseus_crigri
ENSRNOG00000012716	Chd2	98	63.715	ENSCSEG00000003646	chd2	94	66.981	Cynoglossus_semilaevis
ENSRNOG00000012716	Chd2	100	63.929	ENSCVAG00000002427	chd2	99	71.357	Cyprinodon_variegatus
ENSRNOG00000012716	Chd2	96	70.349	ENSDARG00000060687	chd2	100	72.062	Danio_rerio
ENSRNOG00000012716	Chd2	99	95.678	ENSDNOG00000009796	-	100	95.678	Dasypus_novemcinctus
ENSRNOG00000012716	Chd2	50	75.532	ENSEBUG00000014994	chd2	83	75.532	Eptatretus_burgeri
ENSRNOG00000012716	Chd2	100	95.709	ENSEASG00005015526	-	99	100.000	Equus_asinus_asinus
ENSRNOG00000012716	Chd2	97	70.615	ENSELUG00000017981	chd2	100	71.014	Esox_lucius
ENSRNOG00000012716	Chd2	100	88.411	ENSFALG00000010369	-	100	88.357	Ficedula_albicollis
ENSRNOG00000012716	Chd2	100	95.514	ENSFDAG00000020651	-	100	95.514	Fukomys_damarensis
ENSRNOG00000012716	Chd2	88	71.429	ENSFHEG00000002119	chd2	94	70.124	Fundulus_heteroclitus
ENSRNOG00000012716	Chd2	94	69.035	ENSGMOG00000002890	chd2	99	70.439	Gadus_morhua
ENSRNOG00000012716	Chd2	100	87.296	ENSGALG00000006949	CHD2	100	87.351	Gallus_gallus
ENSRNOG00000012716	Chd2	96	70.243	ENSGAFG00000001905	chd2	98	69.956	Gambusia_affinis
ENSRNOG00000012716	Chd2	91	70.676	ENSGACG00000013246	chd2	98	70.370	Gasterosteus_aculeatus
ENSRNOG00000012716	Chd2	80	89.580	ENSGAGG00000013176	-	98	91.398	Gopherus_agassizii
ENSRNOG00000012716	Chd2	100	95.241	ENSGGOG00000015677	CHD2	100	95.241	Gorilla_gorilla
ENSRNOG00000012716	Chd2	96	72.824	ENSHBUG00000017947	chd2	100	72.174	Haplochromis_burtoni
ENSRNOG00000012716	Chd2	100	95.405	ENSHGLG00000004435	CHD2	100	95.405	Heterocephalus_glaber_female
ENSRNOG00000012716	Chd2	100	94.748	ENSHGLG00100016376	-	100	94.748	Heterocephalus_glaber_male
ENSRNOG00000012716	Chd2	96	68.084	ENSHCOG00000008855	chd2	99	66.958	Hippocampus_comes
ENSRNOG00000012716	Chd2	72	74.113	ENSIPUG00000000488	chd2	100	69.184	Ictalurus_punctatus
ENSRNOG00000012716	Chd2	100	96.554	ENSSTOG00000001270	-	100	96.554	Ictidomys_tridecemlineatus
ENSRNOG00000012716	Chd2	100	95.785	ENSJJAG00000000213	Chd2	100	95.785	Jaculus_jaculus
ENSRNOG00000012716	Chd2	84	72.898	ENSKMAG00000015849	chd2	99	73.545	Kryptolebias_marmoratus
ENSRNOG00000012716	Chd2	76	95.815	ENSLAFG00000016885	-	100	96.302	Loxodonta_africana
ENSRNOG00000012716	Chd2	100	96.718	ENSMFAG00000033343	-	100	96.718	Macaca_fascicularis
ENSRNOG00000012716	Chd2	100	96.718	ENSMMUG00000011782	-	100	96.718	Macaca_mulatta
ENSRNOG00000012716	Chd2	100	96.339	ENSMNEG00000036875	-	100	96.339	Macaca_nemestrina
ENSRNOG00000012716	Chd2	100	96.663	ENSMLEG00000035026	-	100	96.663	Mandrillus_leucophaeus
ENSRNOG00000012716	Chd2	96	72.123	ENSMAMG00000009082	chd2	100	71.160	Mastacembelus_armatus
ENSRNOG00000012716	Chd2	99	87.267	ENSMGAG00000008966	-	100	87.322	Meleagris_gallopavo
ENSRNOG00000012716	Chd2	100	95.380	ENSMICG00000000332	-	100	95.380	Microcebus_murinus
ENSRNOG00000012716	Chd2	100	97.538	ENSMOCG00000015124	Chd2	100	97.538	Microtus_ochrogaster
ENSRNOG00000012716	Chd2	100	90.800	ENSMODG00000013158	-	100	91.072	Monodelphis_domestica
ENSRNOG00000012716	Chd2	100	98.084	MGP_CAROLIEiJ_G0029860	Chd2	100	98.084	Mus_caroli
ENSRNOG00000012716	Chd2	100	97.865	ENSMUSG00000078671	Chd2	100	97.865	Mus_musculus
ENSRNOG00000012716	Chd2	100	98.140	MGP_PahariEiJ_G0013082	Chd2	100	98.140	Mus_pahari
ENSRNOG00000012716	Chd2	100	97.975	MGP_SPRETEiJ_G0030962	Chd2	100	97.975	Mus_spretus
ENSRNOG00000012716	Chd2	100	96.442	ENSMPUG00000017577	-	100	96.442	Mustela_putorius_furo
ENSRNOG00000012716	Chd2	100	93.540	ENSMLUG00000009292	-	100	93.540	Myotis_lucifugus
ENSRNOG00000012716	Chd2	100	96.880	ENSNGAG00000010792	Chd2	100	96.880	Nannospalax_galili
ENSRNOG00000012716	Chd2	96	72.063	ENSNBRG00000020591	chd2	100	71.405	Neolamprologus_brichardi
ENSRNOG00000012716	Chd2	100	94.092	ENSNLEG00000012349	-	100	93.873	Nomascus_leucogenys
ENSRNOG00000012716	Chd2	71	87.911	ENSMEUG00000001522	-	77	88.042	Notamacropus_eugenii
ENSRNOG00000012716	Chd2	100	94.530	ENSODEG00000016028	-	100	94.530	Octodon_degus
ENSRNOG00000012716	Chd2	96	72.686	ENSONIG00000015136	chd2	100	72.258	Oreochromis_niloticus
ENSRNOG00000012716	Chd2	88	81.660	ENSOANG00000004385	-	100	81.660	Ornithorhynchus_anatinus
ENSRNOG00000012716	Chd2	100	85.808	ENSOCUG00000001628	-	99	96.699	Oryctolagus_cuniculus
ENSRNOG00000012716	Chd2	96	71.951	ENSORLG00000008403	chd2	100	71.145	Oryzias_latipes
ENSRNOG00000012716	Chd2	96	72.144	ENSORLG00020004138	chd2	100	71.329	Oryzias_latipes_hni
ENSRNOG00000012716	Chd2	100	63.963	ENSOMEG00000005831	chd2	100	65.105	Oryzias_melastigma
ENSRNOG00000012716	Chd2	100	94.311	ENSOGAG00000010399	-	100	94.311	Otolemur_garnettii
ENSRNOG00000012716	Chd2	100	95.285	ENSOARG00000010343	-	100	95.285	Ovis_aries
ENSRNOG00000012716	Chd2	100	95.631	ENSPPAG00000030381	-	100	95.631	Pan_paniscus
ENSRNOG00000012716	Chd2	100	96.663	ENSPTRG00000007478	CHD2	100	96.663	Pan_troglodytes
ENSRNOG00000012716	Chd2	100	93.818	ENSPANG00000033355	-	100	93.818	Papio_anubis
ENSRNOG00000012716	Chd2	99	70.456	ENSPKIG00000000495	chd2	100	72.492	Paramormyrops_kingsleyae
ENSRNOG00000012716	Chd2	84	69.769	ENSPMGG00000009941	chd2	99	70.263	Periophthalmus_magnuspinnatus
ENSRNOG00000012716	Chd2	100	97.975	ENSPEMG00000019507	Chd2	100	97.975	Peromyscus_maniculatus_bairdii
ENSRNOG00000012716	Chd2	91	91.317	ENSPCIG00000009417	-	100	90.455	Phascolarctos_cinereus
ENSRNOG00000012716	Chd2	96	72.707	ENSPFOG00000007050	chd2	100	72.258	Poecilia_formosa
ENSRNOG00000012716	Chd2	96	72.987	ENSPLAG00000005067	chd2	100	72.527	Poecilia_latipinna
ENSRNOG00000012716	Chd2	96	72.763	ENSPMEG00000019628	chd2	100	72.312	Poecilia_mexicana
ENSRNOG00000012716	Chd2	100	95.350	ENSPPYG00000006799	-	100	95.350	Pongo_abelii
ENSRNOG00000012716	Chd2	100	96.608	ENSPCOG00000028084	-	100	96.608	Propithecus_coquereli
ENSRNOG00000012716	Chd2	68	74.900	ENSPNAG00000016719	chd2	99	69.640	Pygocentrus_nattereri
ENSRNOG00000012716	Chd2	100	94.423	ENSRBIG00000036875	-	100	94.423	Rhinopithecus_bieti
ENSRNOG00000012716	Chd2	100	96.444	ENSRROG00000041087	-	100	96.444	Rhinopithecus_roxellana
ENSRNOG00000012716	Chd2	100	96.606	ENSSBOG00000023754	-	100	96.606	Saimiri_boliviensis_boliviensis
ENSRNOG00000012716	Chd2	100	90.909	ENSSHAG00000012513	-	100	91.127	Sarcophilus_harrisii
ENSRNOG00000012716	Chd2	100	73.369	ENSSFOG00015023759	chd2	100	73.585	Scleropages_formosus
ENSRNOG00000012716	Chd2	96	71.421	ENSSMAG00000001726	chd2	100	70.639	Scophthalmus_maximus
ENSRNOG00000012716	Chd2	96	71.161	ENSSLDG00000001146	chd2	100	71.342	Seriola_lalandi_dorsalis
ENSRNOG00000012716	Chd2	77	100.000	ENSSARG00000014112	-	82	100.000	Sorex_araneus
ENSRNOG00000012716	Chd2	99	83.398	ENSSPUG00000011266	-	99	83.241	Sphenodon_punctatus
ENSRNOG00000012716	Chd2	96	71.718	ENSSPAG00000016452	chd2	100	71.389	Stegastes_partitus
ENSRNOG00000012716	Chd2	100	96.389	ENSSSCG00000002266	-	100	96.521	Sus_scrofa
ENSRNOG00000012716	Chd2	100	88.216	ENSTGUG00000008540	-	100	88.161	Taeniopygia_guttata
ENSRNOG00000012716	Chd2	89	68.132	ENSTRUG00000008842	chd2	92	67.987	Takifugu_rubripes
ENSRNOG00000012716	Chd2	87	73.017	ENSTNIG00000010760	chd2	98	73.174	Tetraodon_nigroviridis
ENSRNOG00000012716	Chd2	72	97.357	ENSTBEG00000017730	-	83	97.357	Tupaia_belangeri
ENSRNOG00000012716	Chd2	96	92.727	ENSTTRG00000000430	-	90	94.990	Tursiops_truncatus
ENSRNOG00000012716	Chd2	100	93.924	ENSUMAG00000000083	-	100	93.924	Ursus_maritimus
ENSRNOG00000012716	Chd2	83	97.112	ENSVPAG00000009645	-	86	97.112	Vicugna_pacos
ENSRNOG00000012716	Chd2	89	74.030	ENSXETG00000024129	chd2	73	80.869	Xenopus_tropicalis
ENSRNOG00000012716	Chd2	96	69.960	ENSXCOG00000020255	chd2	100	69.759	Xiphophorus_couchianus
ENSRNOG00000012716	Chd2	96	72.997	ENSXMAG00000002707	chd2	100	72.336	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0004386	helicase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0007517	muscle organ development	-	IEA	Process
GO:0007517	muscle organ development	-	ISO	Process
GO:0042393	histone binding	-	IEA	Function
GO:0042393	histone binding	-	ISO	Function
GO:0043231	intracellular membrane-bounded organelle	-	ISO	Component
GO:0060218	hematopoietic stem cell differentiation	-	IEA	Process
GO:0060218	hematopoietic stem cell differentiation	-	ISO	Process