EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000012750 (Gene tree)
Gene ID
296351
Gene Symbol
Pabpc1l
Alias
LOC296351|RGD1563142
Full Name
poly(A) binding protein%2C cytoplasmic 1-like
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
34184 bases
Position
chr3:160410757-160444940
Accession
1563142
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000052046PABPPF00658.182.5e-2411
ENSRNOP00000052046RRM_5PF13893.61.6e-1412
ENSRNOP00000052046RRM_5PF13893.61.6e-1422
ENSRNOP00000052046RRM_1PF00076.226.7e-9014
ENSRNOP00000052046RRM_1PF00076.226.7e-9024
ENSRNOP00000052046RRM_1PF00076.226.7e-9034
ENSRNOP00000052046RRM_1PF00076.226.7e-9044
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000055172-1821XM_230831ENSRNOP00000052046607 (aa)XP_230831D3ZAS7
Gene Model
Click here to download ENSRNOG00000012750's gene model file
Pathways
Pathway IDPathway NameSource
rno03013RNA transportKEGG
rno03015mRNA surveillance pathwayKEGG
rno03018RNA degradationKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012750's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000012750Pabpc1l6456.742ENSRNOG00000003354Pabpc59556.667
ENSRNOG00000012750Pabpc1l9961.648ENSRNOG00000008639Pabpc19861.429
ENSRNOG00000012750Pabpc1l6334.940ENSRNOG00000006853Elavl28834.940
ENSRNOG00000012750Pabpc1l9957.619ENSRNOG00000014527Pabpc29856.825
ENSRNOG00000012750Pabpc1l5630.247ENSRNOG00000039876LOC6814105030.968
ENSRNOG00000012750Pabpc1l6456.667ENSRNOG00000029749Pabpc4l9956.667
ENSRNOG00000012750Pabpc1l5243.038ENSRNOG00000005387Rbm36143.038
ENSRNOG00000012750Pabpc1l9957.753ENSRNOG00000028592AABR07035074.19857.054
ENSRNOG00000012750Pabpc1l6233.735ENSRNOG00000023601Elavl48833.735
ENSRNOG00000012750Pabpc1l9959.019ENSRNOG00000015642Pabpc49858.295
ENSRNOG00000012750Pabpc1l9856.190ENSRNOG00000017367Pabpc69756.467
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000012750Pabpc1l10076.985ENSG00000101104PABPC1L9985.802Homo_sapiens
ENSRNOG00000012750Pabpc1l9960.000ENSAPOG00000010842pabpc1l9959.777Acanthochromis_polyacanthus
ENSRNOG00000012750Pabpc1l9968.576ENSAMEG00000004099PABPC1L10068.495Ailuropoda_melanoleuca
ENSRNOG00000012750Pabpc1l9865.429ENSACIG00000021004-9965.429Amphilophus_citrinellus
ENSRNOG00000012750Pabpc1l9959.148ENSAOCG00000006167-9959.206Amphiprion_ocellaris
ENSRNOG00000012750Pabpc1l9965.138ENSAPEG00000010558-9874.257Amphiprion_percula
ENSRNOG00000012750Pabpc1l9962.080ENSATEG00000007428pabpc1l9962.036Anabas_testudineus
ENSRNOG00000012750Pabpc1l9865.971ENSAPLG00000008415PABPC1L9865.590Anas_platyrhynchos
ENSRNOG00000012750Pabpc1l9965.072ENSACAG00000011841PABPC1L9865.072Anolis_carolinensis
ENSRNOG00000012750Pabpc1l10076.013ENSANAG00000026826PABPC1L9975.689Aotus_nancymaae
ENSRNOG00000012750Pabpc1l9959.716ENSACLG00000024791pabpc1l9958.685Astatotilapia_calliptera
ENSRNOG00000012750Pabpc1l9962.063ENSAMXG00000013552pabpc1l9961.882Astyanax_mexicanus
ENSRNOG00000012750Pabpc1l5987.500ENSBTAG00000055300-10087.500Bos_taurus
ENSRNOG00000012750Pabpc1l6767.730ENSBTAG00000016849PABPC1L8467.730Bos_taurus
ENSRNOG00000012750Pabpc1l10076.337ENSCJAG00000017628PABPC1L9976.175Callithrix_jacchus
ENSRNOG00000012750Pabpc1l6069.540ENSCJAG00000038506-10069.540Callithrix_jacchus
ENSRNOG00000012750Pabpc1l9966.462ENSCAFG00000009573PABPC1L6977.852Canis_familiaris
ENSRNOG00000012750Pabpc1l9975.733ENSCAFG00020013828PABPC1L9975.733Canis_lupus_dingo
ENSRNOG00000012750Pabpc1l9873.632ENSCHIG00000025759PABPC1L8774.081Capra_hircus
ENSRNOG00000012750Pabpc1l10074.230ENSTSYG00000006645PABPC1L9974.837Carlito_syrichta
ENSRNOG00000012750Pabpc1l9975.093ENSCAPG00000014519PABPC1L9975.093Cavia_aperea
ENSRNOG00000012750Pabpc1l10075.929ENSCPOG00000013633PABPC1L9975.929Cavia_porcellus
ENSRNOG00000012750Pabpc1l10076.175ENSCCAG00000023338PABPC1L9975.689Cebus_capucinus
ENSRNOG00000012750Pabpc1l10077.472ENSCATG00000034065PABPC1L9977.472Cercocebus_atys
ENSRNOG00000012750Pabpc1l10076.737ENSCLAG00000005298PABPC1L9976.737Chinchilla_lanigera
ENSRNOG00000012750Pabpc1l10077.634ENSCSAG00000014242PABPC1L9977.634Chlorocebus_sabaeus
ENSRNOG00000012750Pabpc1l5473.485ENSCPBG00000007810-8173.485Chrysemys_picta_bellii
ENSRNOG00000012750Pabpc1l7274.208ENSCPBG00000017755-9974.208Chrysemys_picta_bellii
ENSRNOG00000012750Pabpc1l9746.169ENSCING00000002796-7660.674Ciona_intestinalis
ENSRNOG00000012750Pabpc1l9754.395ENSCSAVG00000003102-10076.712Ciona_savignyi
ENSRNOG00000012750Pabpc1l9955.319ENSCSAVG00000004246-9954.618Ciona_savignyi
ENSRNOG00000012750Pabpc1l10073.802ENSCANG00000037530PABPC1L9973.642Colobus_angolensis_palliatus
ENSRNOG00000012750Pabpc1l9992.053ENSCGRG00001021938Pabpc1l9992.053Cricetulus_griseus_chok1gshd
ENSRNOG00000012750Pabpc1l9992.053ENSCGRG00000007946Pabpc1l9992.053Cricetulus_griseus_crigri
ENSRNOG00000012750Pabpc1l9959.934ENSCSEG00000021295pabpc1l9959.934Cynoglossus_semilaevis
ENSRNOG00000012750Pabpc1l9961.637ENSCVAG00000015943-9970.861Cyprinodon_variegatus
ENSRNOG00000012750Pabpc1l9962.240ENSDARG00000002597pabpc1l8878.462Danio_rerio
ENSRNOG00000012750Pabpc1l10075.851ENSDNOG00000048450PABPC1L9975.851Dasypus_novemcinctus
ENSRNOG00000012750Pabpc1l10078.120ENSDORG00000001067Pabpc1l9978.120Dipodomys_ordii
ENSRNOG00000012750Pabpc1l9682.927ENSETEG00000009969PABPC1L7182.927Echinops_telfairi
ENSRNOG00000012750Pabpc1l6460.816ENSEASG00005023407-6579.503Equus_asinus_asinus
ENSRNOG00000012750Pabpc1l6085.714ENSEASG00005023408-10085.714Equus_asinus_asinus
ENSRNOG00000012750Pabpc1l7168.359ENSECAG00000040139-8769.600Equus_caballus
ENSRNOG00000012750Pabpc1l9973.693ENSEEUG00000005978PABPC1L9973.693Erinaceus_europaeus
ENSRNOG00000012750Pabpc1l9961.514ENSELUG00000001811pabpc1l9961.295Esox_lucius
ENSRNOG00000012750Pabpc1l9976.634ENSFCAG00000011692PABPC1L9976.471Felis_catus
ENSRNOG00000012750Pabpc1l8169.246ENSFALG00000005372PABPC1L8569.246Ficedula_albicollis
ENSRNOG00000012750Pabpc1l10073.301ENSFDAG00000008291PABPC1L9971.910Fukomys_damarensis
ENSRNOG00000012750Pabpc1l9962.003ENSFHEG00000003398pabpc1l9961.404Fundulus_heteroclitus
ENSRNOG00000012750Pabpc1l9960.737ENSGMOG00000004437pabpc1l9961.290Gadus_morhua
ENSRNOG00000012750Pabpc1l9863.932ENSGALG00000004123PABPC1L9976.019Gallus_gallus
ENSRNOG00000012750Pabpc1l9959.237ENSGAFG00000021057pabpc1l9958.652Gambusia_affinis
ENSRNOG00000012750Pabpc1l9959.779ENSGACG00000002792pabpc1l10059.588Gasterosteus_aculeatus
ENSRNOG00000012750Pabpc1l9966.614ENSGAGG00000000589PABPC1L9866.137Gopherus_agassizii
ENSRNOG00000012750Pabpc1l10077.147ENSGGOG00000004584PABPC1L9976.985Gorilla_gorilla
ENSRNOG00000012750Pabpc1l9960.299ENSHBUG00000006134pabpc1l9960.133Haplochromis_burtoni
ENSRNOG00000012750Pabpc1l10076.375ENSHGLG00000008434PABPC1L9976.375Heterocephalus_glaber_female
ENSRNOG00000012750Pabpc1l10076.375ENSHGLG00100012151PABPC1L9976.375Heterocephalus_glaber_male
ENSRNOG00000012750Pabpc1l6076.923ENSHGLG00100019506-9576.923Heterocephalus_glaber_male
ENSRNOG00000012750Pabpc1l9961.564ENSHCOG00000009270pabpc1l9960.920Hippocampus_comes
ENSRNOG00000012750Pabpc1l6058.046ENSIPUG00000006760-8858.046Ictalurus_punctatus
ENSRNOG00000012750Pabpc1l9962.025ENSIPUG00000012602pabpc1l9962.025Ictalurus_punctatus
ENSRNOG00000012750Pabpc1l6058.621ENSIPUG00000006780-8558.621Ictalurus_punctatus
ENSRNOG00000012750Pabpc1l10077.634ENSSTOG00000003739PABPC1L9977.634Ictidomys_tridecemlineatus
ENSRNOG00000012750Pabpc1l9976.103ENSJJAG00000022406Pabpc1l9973.355Jaculus_jaculus
ENSRNOG00000012750Pabpc1l9961.750ENSKMAG00000016847pabpc1l9961.538Kryptolebias_marmoratus
ENSRNOG00000012750Pabpc1l9960.552ENSLBEG00000010084pabpc1l9960.261Labrus_bergylta
ENSRNOG00000012750Pabpc1l9962.500ENSLACG00000005762PABPC1L9964.469Latimeria_chalumnae
ENSRNOG00000012750Pabpc1l9962.360ENSLOCG00000007519pabpc1l9862.560Lepisosteus_oculatus
ENSRNOG00000012750Pabpc1l9974.519ENSLAFG00000003553PABPC1L10074.519Loxodonta_africana
ENSRNOG00000012750Pabpc1l10077.310ENSMFAG00000040365PABPC1L9977.310Macaca_fascicularis
ENSRNOG00000012750Pabpc1l10075.444ENSMNEG00000032298PABPC1L9975.283Macaca_nemestrina
ENSRNOG00000012750Pabpc1l10077.472ENSMLEG00000043139PABPC1L9977.472Mandrillus_leucophaeus
ENSRNOG00000012750Pabpc1l9761.475ENSMAMG00000011854pabpc1l9360.997Mastacembelus_armatus
ENSRNOG00000012750Pabpc1l9959.716ENSMZEG00005023713pabpc1l9958.685Maylandia_zebra
ENSRNOG00000012750Pabpc1l9966.296ENSMGAG00000003674PABPC1L9966.296Meleagris_gallopavo
ENSRNOG00000012750Pabpc1l9989.934ENSMOCG00000013186Pabpc1l9989.934Microtus_ochrogaster
ENSRNOG00000012750Pabpc1l9960.635ENSMMOG00000020574-9076.923Mola_mola
ENSRNOG00000012750Pabpc1l9770.882ENSMODG00000016198PABPC1L9670.383Monodelphis_domestica
ENSRNOG00000012750Pabpc1l9760.420ENSMALG00000021622pabpc1l9957.418Monopterus_albus
ENSRNOG00000012750Pabpc1l9993.223MGP_CAROLIEiJ_G0024627Pabpc1l9993.223Mus_caroli
ENSRNOG00000012750Pabpc1l9993.058ENSMUSG00000054582Pabpc1l9993.058Mus_musculus
ENSRNOG00000012750Pabpc1l9993.399MGP_PahariEiJ_G0026071Pabpc1l9993.399Mus_pahari
ENSRNOG00000012750Pabpc1l9993.223MGP_SPRETEiJ_G0025549Pabpc1l9993.223Mus_spretus
ENSRNOG00000012750Pabpc1l9973.913ENSMPUG00000017646PABPC1L9973.591Mustela_putorius_furo
ENSRNOG00000012750Pabpc1l9870.968ENSMLUG00000006324PABPC1L9770.968Myotis_lucifugus
ENSRNOG00000012750Pabpc1l10088.303ENSNGAG00000010458Pabpc1l9988.303Nannospalax_galili
ENSRNOG00000012750Pabpc1l9960.526ENSNBRG00000016633pabpc1l9967.874Neolamprologus_brichardi
ENSRNOG00000012750Pabpc1l10061.564ENSMEUG00000007905-9961.526Notamacropus_eugenii
ENSRNOG00000012750Pabpc1l10074.595ENSOPRG00000011846PABPC1L9974.595Ochotona_princeps
ENSRNOG00000012750Pabpc1l10067.961ENSODEG00000015482PABPC1L9968.241Octodon_degus
ENSRNOG00000012750Pabpc1l5770.861ENSODEG00000002920-9170.861Octodon_degus
ENSRNOG00000012750Pabpc1l9959.464ENSONIG00000017314pabpc1l9958.502Oreochromis_niloticus
ENSRNOG00000012750Pabpc1l9060.286ENSOANG00000015793-10058.657Ornithorhynchus_anatinus
ENSRNOG00000012750Pabpc1l9970.597ENSOCUG00000003005PABPC1L9970.597Oryctolagus_cuniculus
ENSRNOG00000012750Pabpc1l9960.064ENSORLG00000010322pabpc1l9965.517Oryzias_latipes
ENSRNOG00000012750Pabpc1l9960.064ENSORLG00020021193pabpc1l9965.517Oryzias_latipes_hni
ENSRNOG00000012750Pabpc1l9959.904ENSORLG00015017018pabpc1l9965.517Oryzias_latipes_hsok
ENSRNOG00000012750Pabpc1l9957.100ENSOMEG00000010789pabpc1l9957.100Oryzias_melastigma
ENSRNOG00000012750Pabpc1l9974.682ENSOGAG00000032999PABPC1L9974.682Otolemur_garnettii
ENSRNOG00000012750Pabpc1l9974.346ENSOARG00000004578PABPC1L9973.821Ovis_aries
ENSRNOG00000012750Pabpc1l10076.823ENSPPAG00000039677PABPC1L9976.661Pan_paniscus
ENSRNOG00000012750Pabpc1l6472.840ENSPPRG00000019327-9872.840Panthera_pardus
ENSRNOG00000012750Pabpc1l9877.063ENSPTIG00000006524PABPC1L9976.898Panthera_tigris_altaica
ENSRNOG00000012750Pabpc1l6485.494ENSPTRG00000013531PABPC1L9985.494Pan_troglodytes
ENSRNOG00000012750Pabpc1l10077.472ENSPANG00000018788PABPC1L9977.472Papio_anubis
ENSRNOG00000012750Pabpc1l9963.082ENSPKIG00000007322pabpc1l9961.882Paramormyrops_kingsleyae
ENSRNOG00000012750Pabpc1l5475.573ENSPKIG00000016810-9375.573Paramormyrops_kingsleyae
ENSRNOG00000012750Pabpc1l6875.779ENSPSIG00000013289PABPC1L9975.779Pelodiscus_sinensis
ENSRNOG00000012750Pabpc1l6271.163ENSPMGG00000023117pabpc1l9771.163Periophthalmus_magnuspinnatus
ENSRNOG00000012750Pabpc1l7063.212ENSPMGG00000023121-9063.212Periophthalmus_magnuspinnatus
ENSRNOG00000012750Pabpc1l9991.240ENSPEMG00000020671Pabpc1l9991.240Peromyscus_maniculatus_bairdii
ENSRNOG00000012750Pabpc1l9962.058ENSPFOG00000013241pabpc1l9961.353Poecilia_formosa
ENSRNOG00000012750Pabpc1l5477.692ENSPLAG00000023686-9277.692Poecilia_latipinna
ENSRNOG00000012750Pabpc1l9960.979ENSPLAG00000017490-9961.353Poecilia_latipinna
ENSRNOG00000012750Pabpc1l9961.014ENSPMEG00000007677pabpc1l9960.413Poecilia_mexicana
ENSRNOG00000012750Pabpc1l5477.692ENSPMEG00000009185-8877.692Poecilia_mexicana
ENSRNOG00000012750Pabpc1l6771.117ENSPREG00000015886pabpc1l10071.117Poecilia_reticulata
ENSRNOG00000012750Pabpc1l10077.310ENSPPYG00000011042PABPC1L9977.147Pongo_abelii
ENSRNOG00000012750Pabpc1l6379.688ENSPCAG00000011787-7579.688Procavia_capensis
ENSRNOG00000012750Pabpc1l9974.183ENSPCOG00000020630PABPC1L9974.183Propithecus_coquereli
ENSRNOG00000012750Pabpc1l9974.346ENSPVAG00000012663PABPC1L9974.346Pteropus_vampyrus
ENSRNOG00000012750Pabpc1l9959.578ENSPNYG00000004101pabpc1l9967.874Pundamilia_nyererei
ENSRNOG00000012750Pabpc1l9956.032ENSPNAG00000021248pabpc1l9955.556Pygocentrus_nattereri
ENSRNOG00000012750Pabpc1l10077.147ENSRBIG00000035381PABPC1L9977.147Rhinopithecus_bieti
ENSRNOG00000012750Pabpc1l10076.985ENSRROG00000044498PABPC1L9976.985Rhinopithecus_roxellana
ENSRNOG00000012750Pabpc1l10076.337ENSSBOG00000009532-9975.851Saimiri_boliviensis_boliviensis
ENSRNOG00000012750Pabpc1l9866.531ENSSHAG00000011446PABPC1L10066.531Sarcophilus_harrisii
ENSRNOG00000012750Pabpc1l9963.175ENSSFOG00015017304pabpc1l9962.839Scleropages_formosus
ENSRNOG00000012750Pabpc1l9960.925ENSSMAG00000010516pabpc1l9876.744Scophthalmus_maximus
ENSRNOG00000012750Pabpc1l9960.890ENSSDUG00000014743pabpc1l9960.664Seriola_dumerili
ENSRNOG00000012750Pabpc1l9867.626ENSSLDG00000006981pabpc1l9072.249Seriola_lalandi_dorsalis
ENSRNOG00000012750Pabpc1l9964.968ENSSPUG00000004233PABPC1L9864.968Sphenodon_punctatus
ENSRNOG00000012750Pabpc1l9959.344ENSSPAG00000017137pabpc1l9959.603Stegastes_partitus
ENSRNOG00000012750Pabpc1l9974.346ENSSSCG00000007382PABPC1L9974.590Sus_scrofa
ENSRNOG00000012750Pabpc1l9965.055ENSTGUG00000005114PABPC1L9964.678Taeniopygia_guttata
ENSRNOG00000012750Pabpc1l9760.386ENSTRUG00000011085pabpc1l9460.033Takifugu_rubripes
ENSRNOG00000012750Pabpc1l9958.491ENSTNIG00000017903pabpc1l9858.491Tetraodon_nigroviridis
ENSRNOG00000012750Pabpc1l9685.959ENSTBEG00000002851PABPC1L8085.959Tupaia_belangeri
ENSRNOG00000012750Pabpc1l9473.666ENSTTRG00000007618PABPC1L9673.565Tursiops_truncatus
ENSRNOG00000012750Pabpc1l9973.203ENSUAMG00000017682PABPC1L9973.203Ursus_americanus
ENSRNOG00000012750Pabpc1l6682.451ENSUMAG00000025436PABPC1L9282.451Ursus_maritimus
ENSRNOG00000012750Pabpc1l9881.154ENSVVUG00000018939PABPC1L9981.154Vulpes_vulpes
ENSRNOG00000012750Pabpc1l9961.146ENSXETG00000022831pabpc1l9960.514Xenopus_tropicalis
ENSRNOG00000012750Pabpc1l9961.821ENSXCOG00000005459pabpc1l9973.759Xiphophorus_couchianus
ENSRNOG00000012750Pabpc1l9962.119ENSXMAG00000017135pabpc1l9961.514Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0001556oocyte maturation-IEAProcess
GO:0001556oocyte maturation-ISOProcess
GO:0003723RNA binding21873635.IBAFunction
GO:0003730mRNA 3'-UTR binding21873635.IBAFunction
GO:0005634nucleus21873635.IBAComponent
GO:0005737cytoplasm21873635.IBAComponent
GO:0005829cytosol21873635.IBAComponent
GO:0006338chromatin remodeling-IEAProcess
GO:0006338chromatin remodeling-ISOProcess
GO:0006378mRNA polyadenylation-IEAProcess
GO:0006378mRNA polyadenylation-ISOProcess
GO:0008143poly(A) binding21873635.IBAFunction
GO:0008266poly(U) RNA binding21873635.IBAFunction
GO:0010494cytoplasmic stress granule21873635.IBAComponent
GO:0048096chromatin-mediated maintenance of transcription-IEAProcess
GO:0048096chromatin-mediated maintenance of transcription-ISOProcess
GO:0051647nucleus localization-IEAProcess
GO:0051647nucleus localization-ISOProcess
GO:1990904ribonucleoprotein complex21873635.IBAComponent

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