EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012806 (Gene tree)
Gene ID: 308968
Gene Symbol: Rbbp6
Alias: LOC308968
Full Name: RB binding protein 6%2C ubiquitin ligase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 31619 bases
Position: chr1:192933540-192965158
Accession: 1311964
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000036139	zf-CCHC_2	PF13696.6	3.9e-09	1	1
ENSRNOP00000036139	zf-CCHC	PF00098.23	6.1e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000035770	-	5975	XM_006230198	ENSRNOP00000036139	1789 (aa)	XP_001076339	G3V953

Gene Model

Click here to download ENSRNOG00000012806's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012806's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012806	Rbbp6	94	88.614	ENSG00000122257	RBBP6	100	98.339	Homo_sapiens
ENSRNOG00000012806	Rbbp6	94	87.000	ENSAMEG00000009312	RBBP6	94	86.647	Ailuropoda_melanoleuca
ENSRNOG00000012806	Rbbp6	91	71.437	ENSAPLG00000009569	RBBP6	95	71.654	Anas_platyrhynchos
ENSRNOG00000012806	Rbbp6	94	88.260	ENSANAG00000037384	RBBP6	96	93.303	Aotus_nancymaae
ENSRNOG00000012806	Rbbp6	94	88.509	ENSBTAG00000009441	RBBP6	61	83.575	Bos_taurus
ENSRNOG00000012806	Rbbp6	94	87.611	ENSCJAG00000020661	RBBP6	96	93.303	Callithrix_jacchus
ENSRNOG00000012806	Rbbp6	96	87.413	ENSCAFG00000017566	RBBP6	98	86.785	Canis_familiaris
ENSRNOG00000012806	Rbbp6	94	88.214	ENSCHIG00000013732	RBBP6	62	83.122	Capra_hircus
ENSRNOG00000012806	Rbbp6	94	89.231	ENSTSYG00000000822	RBBP6	96	97.229	Carlito_syrichta
ENSRNOG00000012806	Rbbp6	87	83.440	ENSCAPG00000012399	RBBP6	93	82.605	Cavia_aperea
ENSRNOG00000012806	Rbbp6	94	86.967	ENSCPOG00000040025	RBBP6	94	86.415	Cavia_porcellus
ENSRNOG00000012806	Rbbp6	94	88.201	ENSCCAG00000023229	RBBP6	96	96.767	Cebus_capucinus
ENSRNOG00000012806	Rbbp6	94	88.260	ENSCATG00000033601	RBBP6	96	96.767	Cercocebus_atys
ENSRNOG00000012806	Rbbp6	94	86.671	ENSCLAG00000009872	RBBP6	94	86.119	Chinchilla_lanigera
ENSRNOG00000012806	Rbbp6	94	88.201	ENSCSAG00000006609	RBBP6	94	87.832	Chlorocebus_sabaeus
ENSRNOG00000012806	Rbbp6	62	96.325	ENSCHOG00000000278	RBBP6	63	96.302	Choloepus_hoffmanni
ENSRNOG00000012806	Rbbp6	94	73.765	ENSCPBG00000001818	RBBP6	94	79.924	Chrysemys_picta_bellii
ENSRNOG00000012806	Rbbp6	94	88.201	ENSCANG00000039613	RBBP6	96	96.998	Colobus_angolensis_palliatus
ENSRNOG00000012806	Rbbp6	94	93.558	ENSCGRG00001017193	Rbbp6	94	93.144	Cricetulus_griseus_chok1gshd
ENSRNOG00000012806	Rbbp6	94	93.558	ENSCGRG00000011887	Rbbp6	94	93.144	Cricetulus_griseus_crigri
ENSRNOG00000012806	Rbbp6	94	87.936	ENSDNOG00000048802	RBBP6	94	87.936	Dasypus_novemcinctus
ENSRNOG00000012806	Rbbp6	96	86.941	ENSDORG00000010285	Rbbp6	96	86.498	Dipodomys_ordii
ENSRNOG00000012806	Rbbp6	94	89.053	ENSFCAG00000043694	RBBP6	96	96.074	Felis_catus
ENSRNOG00000012806	Rbbp6	93	70.723	ENSFALG00000003750	RBBP6	94	70.653	Ficedula_albicollis
ENSRNOG00000012806	Rbbp6	94	86.864	ENSFDAG00000013132	RBBP6	94	86.431	Fukomys_damarensis
ENSRNOG00000012806	Rbbp6	97	73.413	ENSGALG00000006043	RBBP6	90	73.058	Gallus_gallus
ENSRNOG00000012806	Rbbp6	88	80.077	ENSGAGG00000004371	RBBP6	94	80.306	Gopherus_agassizii
ENSRNOG00000012806	Rbbp6	94	88.378	ENSGGOG00000007137	RBBP6	96	96.536	Gorilla_gorilla
ENSRNOG00000012806	Rbbp6	94	86.315	ENSHGLG00000008327	RBBP6	94	85.765	Heterocephalus_glaber_female
ENSRNOG00000012806	Rbbp6	94	83.132	ENSHGLG00100007773	RBBP6	88	83.768	Heterocephalus_glaber_male
ENSRNOG00000012806	Rbbp6	94	87.175	ENSJJAG00000014549	Rbbp6	94	86.836	Jaculus_jaculus
ENSRNOG00000012806	Rbbp6	92	51.131	ENSLOCG00000005487	RBBP6	95	53.649	Lepisosteus_oculatus
ENSRNOG00000012806	Rbbp6	94	87.367	ENSLAFG00000009528	RBBP6	94	86.954	Loxodonta_africana
ENSRNOG00000012806	Rbbp6	94	88.201	ENSMFAG00000038627	RBBP6	96	96.998	Macaca_fascicularis
ENSRNOG00000012806	Rbbp6	94	88.142	ENSMMUG00000015908	RBBP6	96	96.998	Macaca_mulatta
ENSRNOG00000012806	Rbbp6	94	88.319	ENSMNEG00000033630	RBBP6	96	96.998	Macaca_nemestrina
ENSRNOG00000012806	Rbbp6	94	88.319	ENSMLEG00000030073	RBBP6	96	96.998	Mandrillus_leucophaeus
ENSRNOG00000012806	Rbbp6	93	71.639	ENSMGAG00000006423	RBBP6	94	71.282	Meleagris_gallopavo
ENSRNOG00000012806	Rbbp6	94	89.053	ENSMICG00000008059	RBBP6	89	96.998	Microcebus_murinus
ENSRNOG00000012806	Rbbp6	94	76.437	ENSMODG00000016318	-	94	76.043	Monodelphis_domestica
ENSRNOG00000012806	Rbbp6	70	96.703	MGP_CAROLIEiJ_G0030424	-	100	98.182	Mus_caroli
ENSRNOG00000012806	Rbbp6	100	95.815	ENSMUSG00000030779	Rbbp6	100	95.424	Mus_musculus
ENSRNOG00000012806	Rbbp6	100	95.036	MGP_PahariEiJ_G0013634	Rbbp6	100	94.757	Mus_pahari
ENSRNOG00000012806	Rbbp6	100	95.592	MGP_SPRETEiJ_G0031538	Rbbp6	100	95.201	Mus_spretus
ENSRNOG00000012806	Rbbp6	94	85.891	ENSMLUG00000010601	-	94	85.478	Myotis_lucifugus
ENSRNOG00000012806	Rbbp6	60	88.100	ENSNGAG00000002381	Rbbp6	62	86.909	Nannospalax_galili
ENSRNOG00000012806	Rbbp6	92	96.108	ENSNLEG00000011896	RBBP6	96	96.536	Nomascus_leucogenys
ENSRNOG00000012806	Rbbp6	88	78.223	ENSMEUG00000014491	RBBP6	88	78.223	Notamacropus_eugenii
ENSRNOG00000012806	Rbbp6	58	98.870	ENSOPRG00000016272	RBBP6	59	98.830	Ochotona_princeps
ENSRNOG00000012806	Rbbp6	94	75.029	ENSOANG00000007673	RBBP6	94	75.371	Ornithorhynchus_anatinus
ENSRNOG00000012806	Rbbp6	99	83.955	ENSOCUG00000004346	RBBP6	97	84.475	Oryctolagus_cuniculus
ENSRNOG00000012806	Rbbp6	94	88.671	ENSOGAG00000026986	RBBP6	94	88.316	Otolemur_garnettii
ENSRNOG00000012806	Rbbp6	94	86.404	ENSOARG00000017741	RBBP6	61	83.031	Ovis_aries
ENSRNOG00000012806	Rbbp6	94	86.726	ENSPPAG00000023595	RBBP6	94	86.356	Pan_paniscus
ENSRNOG00000012806	Rbbp6	94	88.935	ENSPPRG00000004074	RBBP6	96	95.843	Panthera_pardus
ENSRNOG00000012806	Rbbp6	94	88.935	ENSPTIG00000010342	RBBP6	96	95.843	Panthera_tigris_altaica
ENSRNOG00000012806	Rbbp6	94	88.496	ENSPTRG00000007897	RBBP6	96	96.767	Pan_troglodytes
ENSRNOG00000012806	Rbbp6	94	88.437	ENSPANG00000019625	RBBP6	96	97.229	Papio_anubis
ENSRNOG00000012806	Rbbp6	94	79.520	ENSPCIG00000014000	RBBP6	94	79.064	Phascolarctos_cinereus
ENSRNOG00000012806	Rbbp6	94	89.172	ENSPCOG00000021939	RBBP6	89	96.767	Propithecus_coquereli
ENSRNOG00000012806	Rbbp6	62	91.289	ENSPVAG00000001110	RBBP6	85	89.409	Pteropus_vampyrus
ENSRNOG00000012806	Rbbp6	98	89.870	ENSRBIG00000004517	RBBP6	99	90.996	Rhinopithecus_bieti
ENSRNOG00000012806	Rbbp6	94	88.083	ENSRROG00000032092	RBBP6	96	96.998	Rhinopithecus_roxellana
ENSRNOG00000012806	Rbbp6	94	87.965	ENSSBOG00000021666	RBBP6	96	93.303	Saimiri_boliviensis_boliviensis
ENSRNOG00000012806	Rbbp6	94	80.472	ENSSHAG00000004727	-	94	80.012	Sarcophilus_harrisii
ENSRNOG00000012806	Rbbp6	89	83.779	ENSSARG00000004977	RBBP6	94	83.551	Sorex_araneus
ENSRNOG00000012806	Rbbp6	94	88.423	ENSSSCG00000007830	RBBP6	94	88.626	Sus_scrofa
ENSRNOG00000012806	Rbbp6	93	71.311	ENSTGUG00000006185	RBBP6	94	71.196	Taeniopygia_guttata
ENSRNOG00000012806	Rbbp6	94	86.458	ENSTTRG00000002696	RBBP6	94	86.415	Tursiops_truncatus
ENSRNOG00000012806	Rbbp6	94	81.754	ENSUMAG00000008537	RBBP6	94	87.021	Ursus_maritimus
ENSRNOG00000012806	Rbbp6	66	91.916	ENSVPAG00000006458	RBBP6	79	91.916	Vicugna_pacos
ENSRNOG00000012806	Rbbp6	94	88.791	ENSVVUG00000005484	RBBP6	94	88.378	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001701	in utero embryonic development	-	IEA	Process
GO:0001701	in utero embryonic development	-	ISO	Process
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0004842	ubiquitin-protein transferase activity	-	ISO	Function
GO:0005813	centrosome	-	IEA	Component
GO:0005813	centrosome	-	ISO	Component
GO:0006275	regulation of DNA replication	-	IEA	Process
GO:0006275	regulation of DNA replication	-	ISO	Process
GO:0006397	mRNA processing	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	IEA	Process
GO:0006511	ubiquitin-dependent protein catabolic process	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	IEA	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016567	protein ubiquitination	-	IEA	Process
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0019901	protein kinase binding	-	IEA	Function
GO:0019901	protein kinase binding	-	ISO	Function
GO:0032991	protein-containing complex	-	IEA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0035264	multicellular organism growth	-	IEA	Process
GO:0035264	multicellular organism growth	-	ISO	Process
GO:0048568	embryonic organ development	-	IEA	Process
GO:0048568	embryonic organ development	-	ISO	Process
GO:0061053	somite development	-	IEA	Process
GO:0061053	somite development	-	ISO	Process
GO:0061630	ubiquitin protein ligase activity	-	IEA	Function
GO:0061630	ubiquitin protein ligase activity	-	ISO	Function