EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012828 (Gene tree)
Gene ID: 312706
Gene Symbol: Emg1
Alias: Grcc2f|LOC312706
Full Name: EMG1 N1-specific pseudouridine methyltransferase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 8263 bases
Position: chr4:157222385-157230647
Accession: 1307665
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017334	EMG1	PF03587.14	1.9e-84	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017334	-	1828	-	ENSRNOP00000017334	244 (aa)	-	D3ZDS4

Gene Model

Click here to download ENSRNOG00000012828's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012828's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012828	Emg1	100	90.984	ENSG00000126749	EMG1	100	90.984	Homo_sapiens
ENSRNOG00000012828	Emg1	92	70.982	ENSAPOG00000023213	emg1	94	70.982	Acanthochromis_polyacanthus
ENSRNOG00000012828	Emg1	100	90.574	ENSAMEG00000013753	EMG1	100	90.574	Ailuropoda_melanoleuca
ENSRNOG00000012828	Emg1	100	68.443	ENSACIG00000011786	emg1	100	68.443	Amphilophus_citrinellus
ENSRNOG00000012828	Emg1	99	66.667	ENSAOCG00000006520	emg1	99	66.667	Amphiprion_ocellaris
ENSRNOG00000012828	Emg1	99	66.667	ENSAPEG00000011094	emg1	99	66.667	Amphiprion_percula
ENSRNOG00000012828	Emg1	100	68.443	ENSATEG00000021642	emg1	100	68.443	Anabas_testudineus
ENSRNOG00000012828	Emg1	77	85.714	ENSAPLG00000005308	EMG1	100	85.714	Anas_platyrhynchos
ENSRNOG00000012828	Emg1	85	85.096	ENSACAG00000007210	EMG1	91	85.096	Anolis_carolinensis
ENSRNOG00000012828	Emg1	100	89.388	ENSANAG00000022855	-	100	89.388	Aotus_nancymaae
ENSRNOG00000012828	Emg1	100	82.377	ENSANAG00000029536	-	100	82.377	Aotus_nancymaae
ENSRNOG00000012828	Emg1	100	68.443	ENSACLG00000023688	emg1	100	68.443	Astatotilapia_calliptera
ENSRNOG00000012828	Emg1	100	68.033	ENSAMXG00000018994	emg1	100	68.033	Astyanax_mexicanus
ENSRNOG00000012828	Emg1	100	92.213	ENSBTAG00000013126	EMG1	70	92.213	Bos_taurus
ENSRNOG00000012828	Emg1	90	56.502	WBGene00012652	Y39A1A.14	97	56.502	Caenorhabditis_elegans
ENSRNOG00000012828	Emg1	100	90.164	ENSCJAG00000007120	EMG1	100	90.164	Callithrix_jacchus
ENSRNOG00000012828	Emg1	100	90.984	ENSCAFG00000014424	EMG1	100	90.984	Canis_familiaris
ENSRNOG00000012828	Emg1	100	90.984	ENSCAFG00020003127	EMG1	100	90.984	Canis_lupus_dingo
ENSRNOG00000012828	Emg1	100	91.803	ENSCHIG00000003188	EMG1	100	91.803	Capra_hircus
ENSRNOG00000012828	Emg1	62	93.377	ENSTSYG00000035847	EMG1	100	93.377	Carlito_syrichta
ENSRNOG00000012828	Emg1	62	96.026	ENSCAPG00000011212	EMG1	100	96.026	Cavia_aperea
ENSRNOG00000012828	Emg1	100	91.393	ENSCPOG00000025388	EMG1	100	91.393	Cavia_porcellus
ENSRNOG00000012828	Emg1	62	67.763	ENSCCAG00000024274	-	100	67.763	Cebus_capucinus
ENSRNOG00000012828	Emg1	100	90.164	ENSCCAG00000033309	-	100	90.164	Cebus_capucinus
ENSRNOG00000012828	Emg1	60	72.603	ENSCCAG00000034889	-	85	72.603	Cebus_capucinus
ENSRNOG00000012828	Emg1	100	91.393	ENSCATG00000016750	EMG1	100	91.393	Cercocebus_atys
ENSRNOG00000012828	Emg1	100	91.393	ENSCLAG00000015067	EMG1	100	91.393	Chinchilla_lanigera
ENSRNOG00000012828	Emg1	100	91.393	ENSCSAG00000010140	EMG1	100	91.393	Chlorocebus_sabaeus
ENSRNOG00000012828	Emg1	100	91.803	ENSCHOG00000002886	EMG1	100	91.803	Choloepus_hoffmanni
ENSRNOG00000012828	Emg1	70	88.235	ENSCPBG00000005167	EMG1	59	88.235	Chrysemys_picta_bellii
ENSRNOG00000012828	Emg1	84	75.728	ENSCING00000022202	-	87	75.728	Ciona_intestinalis
ENSRNOG00000012828	Emg1	84	74.020	ENSCSAVG00000005612	-	86	74.020	Ciona_savignyi
ENSRNOG00000012828	Emg1	100	90.574	ENSCANG00000043101	-	100	90.574	Colobus_angolensis_palliatus
ENSRNOG00000012828	Emg1	93	81.938	ENSCANG00000042498	-	100	87.857	Colobus_angolensis_palliatus
ENSRNOG00000012828	Emg1	100	93.443	ENSCGRG00001018228	Emg1	100	93.443	Cricetulus_griseus_chok1gshd
ENSRNOG00000012828	Emg1	100	93.443	ENSCGRG00000018238	Emg1	100	93.443	Cricetulus_griseus_crigri
ENSRNOG00000012828	Emg1	96	66.946	ENSCSEG00000020136	emg1	99	66.946	Cynoglossus_semilaevis
ENSRNOG00000012828	Emg1	92	71.875	ENSCVAG00000001164	emg1	94	71.875	Cyprinodon_variegatus
ENSRNOG00000012828	Emg1	100	66.803	ENSDARG00000056914	emg1	100	66.803	Danio_rerio
ENSRNOG00000012828	Emg1	100	91.393	ENSDNOG00000005533	EMG1	100	91.393	Dasypus_novemcinctus
ENSRNOG00000012828	Emg1	100	75.410	ENSDORG00000009795	Emg1	100	75.410	Dipodomys_ordii
ENSRNOG00000012828	Emg1	96	58.704	FBgn0029714	CG3527	96	58.704	Drosophila_melanogaster
ENSRNOG00000012828	Emg1	62	61.842	ENSETEG00000009111	-	99	61.842	Echinops_telfairi
ENSRNOG00000012828	Emg1	90	65.611	ENSEBUG00000008287	emg1	99	58.824	Eptatretus_burgeri
ENSRNOG00000012828	Emg1	100	92.213	ENSEASG00005016018	EMG1	100	92.213	Equus_asinus_asinus
ENSRNOG00000012828	Emg1	100	92.623	ENSECAG00000022412	EMG1	100	92.623	Equus_caballus
ENSRNOG00000012828	Emg1	100	91.393	ENSEEUG00000000065	EMG1	100	91.393	Erinaceus_europaeus
ENSRNOG00000012828	Emg1	100	90.164	ENSFCAG00000004288	EMG1	100	90.164	Felis_catus
ENSRNOG00000012828	Emg1	84	89.320	ENSFALG00000004617	EMG1	86	89.320	Ficedula_albicollis
ENSRNOG00000012828	Emg1	100	90.574	ENSFDAG00000011086	EMG1	100	90.574	Fukomys_damarensis
ENSRNOG00000012828	Emg1	50	71.901	ENSFHEG00000014379	emg1	55	70.732	Fundulus_heteroclitus
ENSRNOG00000012828	Emg1	57	61.594	ENSFHEG00000014307	emg1	82	61.594	Fundulus_heteroclitus
ENSRNOG00000012828	Emg1	100	66.393	ENSGMOG00000011025	emg1	98	66.393	Gadus_morhua
ENSRNOG00000012828	Emg1	96	80.000	ENSGALG00000014568	EMG1	99	80.000	Gallus_gallus
ENSRNOG00000012828	Emg1	92	72.321	ENSGAFG00000014143	emg1	94	72.321	Gambusia_affinis
ENSRNOG00000012828	Emg1	96	69.198	ENSGACG00000010330	emg1	96	69.198	Gasterosteus_aculeatus
ENSRNOG00000012828	Emg1	77	87.831	ENSGAGG00000005641	EMG1	100	86.755	Gopherus_agassizii
ENSRNOG00000012828	Emg1	100	90.984	ENSGGOG00000004287	EMG1	100	90.984	Gorilla_gorilla
ENSRNOG00000012828	Emg1	100	68.443	ENSHBUG00000014862	emg1	100	68.443	Haplochromis_burtoni
ENSRNOG00000012828	Emg1	100	91.463	ENSHGLG00000001300	EMG1	100	91.463	Heterocephalus_glaber_female
ENSRNOG00000012828	Emg1	100	91.463	ENSHGLG00100011644	EMG1	100	91.463	Heterocephalus_glaber_male
ENSRNOG00000012828	Emg1	100	66.803	ENSHCOG00000017870	emg1	100	66.803	Hippocampus_comes
ENSRNOG00000012828	Emg1	100	68.033	ENSIPUG00000008261	emg1	100	68.033	Ictalurus_punctatus
ENSRNOG00000012828	Emg1	100	92.213	ENSSTOG00000000387	EMG1	100	92.213	Ictidomys_tridecemlineatus
ENSRNOG00000012828	Emg1	100	89.837	ENSJJAG00000018448	Emg1	100	89.837	Jaculus_jaculus
ENSRNOG00000012828	Emg1	100	67.623	ENSKMAG00000007069	emg1	100	67.623	Kryptolebias_marmoratus
ENSRNOG00000012828	Emg1	100	68.033	ENSLBEG00000007424	emg1	100	68.033	Labrus_bergylta
ENSRNOG00000012828	Emg1	99	69.547	ENSLOCG00000008451	emg1	98	69.547	Lepisosteus_oculatus
ENSRNOG00000012828	Emg1	100	91.393	ENSLAFG00000001314	EMG1	100	91.393	Loxodonta_africana
ENSRNOG00000012828	Emg1	100	91.393	ENSMFAG00000037142	EMG1	100	91.393	Macaca_fascicularis
ENSRNOG00000012828	Emg1	100	91.393	ENSMMUG00000010207	EMG1	100	91.393	Macaca_mulatta
ENSRNOG00000012828	Emg1	100	91.393	ENSMNEG00000040907	EMG1	100	91.393	Macaca_nemestrina
ENSRNOG00000012828	Emg1	100	91.393	ENSMLEG00000026029	EMG1	100	91.393	Mandrillus_leucophaeus
ENSRNOG00000012828	Emg1	100	68.852	ENSMAMG00000001888	emg1	100	68.852	Mastacembelus_armatus
ENSRNOG00000012828	Emg1	100	68.443	ENSMZEG00005017546	emg1	100	68.443	Maylandia_zebra
ENSRNOG00000012828	Emg1	84	87.379	ENSMGAG00000014145	EMG1	85	87.379	Meleagris_gallopavo
ENSRNOG00000012828	Emg1	100	94.262	ENSMAUG00000011093	Emg1	100	94.262	Mesocricetus_auratus
ENSRNOG00000012828	Emg1	100	93.033	ENSMICG00000001790	EMG1	100	93.033	Microcebus_murinus
ENSRNOG00000012828	Emg1	100	95.082	ENSMOCG00000022570	Emg1	100	95.082	Microtus_ochrogaster
ENSRNOG00000012828	Emg1	100	66.803	ENSMMOG00000016090	emg1	100	66.803	Mola_mola
ENSRNOG00000012828	Emg1	100	86.066	ENSMODG00000018161	EMG1	98	86.066	Monodelphis_domestica
ENSRNOG00000012828	Emg1	95	69.658	ENSMALG00000022477	emg1	98	69.658	Monopterus_albus
ENSRNOG00000012828	Emg1	100	97.951	MGP_CAROLIEiJ_G0028844	Emg1	100	97.951	Mus_caroli
ENSRNOG00000012828	Emg1	100	96.721	ENSMUSG00000004268	Emg1	100	96.721	Mus_musculus
ENSRNOG00000012828	Emg1	100	97.131	MGP_PahariEiJ_G0022605	Emg1	100	97.131	Mus_pahari
ENSRNOG00000012828	Emg1	100	97.131	MGP_SPRETEiJ_G0029886	Emg1	100	97.131	Mus_spretus
ENSRNOG00000012828	Emg1	100	90.164	ENSMPUG00000016763	EMG1	100	90.164	Mustela_putorius_furo
ENSRNOG00000012828	Emg1	100	91.057	ENSMLUG00000009196	EMG1	100	91.057	Myotis_lucifugus
ENSRNOG00000012828	Emg1	100	91.803	ENSNGAG00000022592	Emg1	100	91.803	Nannospalax_galili
ENSRNOG00000012828	Emg1	100	68.443	ENSNBRG00000001192	emg1	100	68.443	Neolamprologus_brichardi
ENSRNOG00000012828	Emg1	100	90.574	ENSNLEG00000005080	EMG1	100	90.574	Nomascus_leucogenys
ENSRNOG00000012828	Emg1	93	87.665	ENSMEUG00000000831	EMG1	100	87.665	Notamacropus_eugenii
ENSRNOG00000012828	Emg1	64	87.421	ENSOPRG00000004071	-	100	87.421	Ochotona_princeps
ENSRNOG00000012828	Emg1	77	94.681	ENSOPRG00000016878	-	100	94.681	Ochotona_princeps
ENSRNOG00000012828	Emg1	100	90.574	ENSODEG00000004059	EMG1	100	90.574	Octodon_degus
ENSRNOG00000012828	Emg1	100	68.443	ENSONIG00000012893	emg1	99	68.443	Oreochromis_niloticus
ENSRNOG00000012828	Emg1	100	91.393	ENSOCUG00000003603	EMG1	100	91.393	Oryctolagus_cuniculus
ENSRNOG00000012828	Emg1	92	72.768	ENSORLG00000012146	emg1	91	72.768	Oryzias_latipes
ENSRNOG00000012828	Emg1	92	72.768	ENSORLG00020005499	emg1	94	72.768	Oryzias_latipes_hni
ENSRNOG00000012828	Emg1	92	72.768	ENSORLG00015011535	emg1	94	72.768	Oryzias_latipes_hsok
ENSRNOG00000012828	Emg1	92	73.661	ENSOMEG00000012687	emg1	94	73.661	Oryzias_melastigma
ENSRNOG00000012828	Emg1	100	91.393	ENSOGAG00000006975	EMG1	100	91.393	Otolemur_garnettii
ENSRNOG00000012828	Emg1	100	90.650	ENSOARG00000004923	EMG1	100	90.650	Ovis_aries
ENSRNOG00000012828	Emg1	100	91.803	ENSPPAG00000033046	EMG1	100	91.803	Pan_paniscus
ENSRNOG00000012828	Emg1	100	90.574	ENSPPRG00000012350	EMG1	100	90.574	Panthera_pardus
ENSRNOG00000012828	Emg1	100	90.574	ENSPTIG00000000358	EMG1	100	90.574	Panthera_tigris_altaica
ENSRNOG00000012828	Emg1	100	91.803	ENSPTRG00000048050	EMG1	100	91.803	Pan_troglodytes
ENSRNOG00000012828	Emg1	100	90.574	ENSPANG00000005523	-	100	90.574	Papio_anubis
ENSRNOG00000012828	Emg1	100	90.984	ENSPANG00000019398	-	100	90.984	Papio_anubis
ENSRNOG00000012828	Emg1	100	68.163	ENSPKIG00000025303	emg1	100	68.163	Paramormyrops_kingsleyae
ENSRNOG00000012828	Emg1	95	79.828	ENSPSIG00000011094	EMG1	98	79.828	Pelodiscus_sinensis
ENSRNOG00000012828	Emg1	92	73.214	ENSPMGG00000019918	emg1	94	73.214	Periophthalmus_magnuspinnatus
ENSRNOG00000012828	Emg1	100	93.852	ENSPEMG00000010244	Emg1	100	93.852	Peromyscus_maniculatus_bairdii
ENSRNOG00000012828	Emg1	100	88.115	ENSPCIG00000002814	EMG1	100	88.115	Phascolarctos_cinereus
ENSRNOG00000012828	Emg1	92	71.429	ENSPFOG00000013034	emg1	94	71.429	Poecilia_formosa
ENSRNOG00000012828	Emg1	92	71.429	ENSPLAG00000000125	emg1	94	71.429	Poecilia_latipinna
ENSRNOG00000012828	Emg1	92	71.875	ENSPMEG00000016802	emg1	94	71.875	Poecilia_mexicana
ENSRNOG00000012828	Emg1	99	67.220	ENSPREG00000010409	emg1	83	67.220	Poecilia_reticulata
ENSRNOG00000012828	Emg1	100	91.803	ENSPPYG00000004215	EMG1	100	91.803	Pongo_abelii
ENSRNOG00000012828	Emg1	100	77.869	ENSPCAG00000012368	EMG1	100	77.869	Procavia_capensis
ENSRNOG00000012828	Emg1	100	93.443	ENSPCOG00000028560	EMG1	100	93.443	Propithecus_coquereli
ENSRNOG00000012828	Emg1	100	91.803	ENSPVAG00000006030	EMG1	100	91.803	Pteropus_vampyrus
ENSRNOG00000012828	Emg1	100	68.443	ENSPNYG00000023172	emg1	100	68.443	Pundamilia_nyererei
ENSRNOG00000012828	Emg1	100	67.213	ENSPNAG00000019953	emg1	100	67.213	Pygocentrus_nattereri
ENSRNOG00000012828	Emg1	100	91.393	ENSRBIG00000031315	EMG1	100	91.393	Rhinopithecus_bieti
ENSRNOG00000012828	Emg1	100	91.393	ENSRROG00000032961	EMG1	100	91.393	Rhinopithecus_roxellana
ENSRNOG00000012828	Emg1	84	52.336	YLR186W	EMG1	85	52.336	Saccharomyces_cerevisiae
ENSRNOG00000012828	Emg1	100	90.574	ENSSBOG00000029143	-	100	90.574	Saimiri_boliviensis_boliviensis
ENSRNOG00000012828	Emg1	93	66.520	ENSSBOG00000022895	-	93	66.520	Saimiri_boliviensis_boliviensis
ENSRNOG00000012828	Emg1	100	86.885	ENSSHAG00000016428	EMG1	100	86.885	Sarcophilus_harrisii
ENSRNOG00000012828	Emg1	100	67.073	ENSSFOG00015002421	emg1	100	67.073	Scleropages_formosus
ENSRNOG00000012828	Emg1	92	73.214	ENSSMAG00000011806	emg1	94	73.214	Scophthalmus_maximus
ENSRNOG00000012828	Emg1	98	68.724	ENSSDUG00000011345	emg1	96	68.724	Seriola_dumerili
ENSRNOG00000012828	Emg1	100	68.443	ENSSLDG00000023439	emg1	95	68.443	Seriola_lalandi_dorsalis
ENSRNOG00000012828	Emg1	100	70.902	ENSSARG00000002227	EMG1	100	70.902	Sorex_araneus
ENSRNOG00000012828	Emg1	85	83.173	ENSSPUG00000014446	EMG1	89	83.173	Sphenodon_punctatus
ENSRNOG00000012828	Emg1	91	71.749	ENSSPAG00000005460	emg1	94	71.749	Stegastes_partitus
ENSRNOG00000012828	Emg1	100	92.213	ENSSSCG00000026812	EMG1	100	92.213	Sus_scrofa
ENSRNOG00000012828	Emg1	84	89.806	ENSTGUG00000013271	EMG1	100	89.806	Taeniopygia_guttata
ENSRNOG00000012828	Emg1	92	72.768	ENSTRUG00000001906	emg1	94	72.768	Takifugu_rubripes
ENSRNOG00000012828	Emg1	96	70.339	ENSTNIG00000008047	emg1	97	70.339	Tetraodon_nigroviridis
ENSRNOG00000012828	Emg1	86	94.258	ENSTBEG00000015406	EMG1	100	94.258	Tupaia_belangeri
ENSRNOG00000012828	Emg1	100	76.639	ENSTTRG00000004810	EMG1	100	76.639	Tursiops_truncatus
ENSRNOG00000012828	Emg1	100	90.984	ENSUAMG00000026959	EMG1	100	90.984	Ursus_americanus
ENSRNOG00000012828	Emg1	100	90.574	ENSUMAG00000003248	EMG1	100	90.574	Ursus_maritimus
ENSRNOG00000012828	Emg1	100	90.984	ENSVVUG00000010807	EMG1	100	90.984	Vulpes_vulpes
ENSRNOG00000012828	Emg1	83	81.281	ENSXETG00000023917	emg1	99	81.281	Xenopus_tropicalis
ENSRNOG00000012828	Emg1	92	71.429	ENSXMAG00000011508	emg1	94	71.429	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001824	blastocyst development	-	IEA	Process
GO:0001824	blastocyst development	-	ISO	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	21873635.	IBA	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0017126	nucleologenesis	-	IEA	Process
GO:0017126	nucleologenesis	-	ISO	Process
GO:0019843	rRNA binding	21873635.	IBA	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0070037	rRNA (pseudouridine) methyltransferase activity	21873635.	IBA	Function
GO:0070037	rRNA (pseudouridine) methyltransferase activity	-	ISO	Function
GO:0070475	rRNA base methylation	21873635.	IBA	Process