EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012954 (Gene tree)
Gene ID: 500255
Gene Symbol: Eefsec
Alias: LOC500255|RGD1560552
Full Name: eukaryotic elongation factor%2C selenocysteine-tRNA-specific
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 195853 bases
Position: chr4:120194335-120390187
Accession: 1560552
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000058839	GTP_EFTU	PF00009.27	3.4e-26	1	1
ENSRNOP00000017323	GTP_EFTU	PF00009.27	8.2e-26	1	1
ENSRNOP00000058839	MMR_HSR1	PF01926.23	1.1e-05	1	1
ENSRNOP00000017323	MMR_HSR1	PF01926.23	2.9e-05	1	1
ENSRNOP00000017323	GTP_EFTU_D2	PF03144.25	2.9e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000063950	-	2005	-	ENSRNOP00000058839	363 (aa)	-	D3Z9S4
ENSRNOT00000017323	-	2115	XM_006236864	ENSRNOP00000017323	583 (aa)	XP_006236926	B5DEJ5

Gene Model

Click here to download ENSRNOG00000012954's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012954's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012954	Eefsec	100	88.610	ENSG00000132394	EEFSEC	100	88.610	Homo_sapiens
ENSRNOG00000012954	Eefsec	99	69.960	ENSAPOG00000015931	eefsec	98	63.140	Acanthochromis_polyacanthus
ENSRNOG00000012954	Eefsec	84	84.016	ENSAMEG00000015165	EEFSEC	98	84.016	Ailuropoda_melanoleuca
ENSRNOG00000012954	Eefsec	99	67.213	ENSACIG00000022407	eefsec	99	67.302	Amphilophus_citrinellus
ENSRNOG00000012954	Eefsec	99	69.960	ENSAOCG00000008603	eefsec	98	63.311	Amphiprion_ocellaris
ENSRNOG00000012954	Eefsec	99	69.565	ENSAPEG00000017090	eefsec	98	62.104	Amphiprion_percula
ENSRNOG00000012954	Eefsec	99	70.800	ENSATEG00000002753	eefsec	99	61.706	Anabas_testudineus
ENSRNOG00000012954	Eefsec	74	79.908	ENSAPLG00000006745	EEFSEC	100	79.908	Anas_platyrhynchos
ENSRNOG00000012954	Eefsec	100	87.940	ENSANAG00000032691	EEFSEC	100	87.940	Aotus_nancymaae
ENSRNOG00000012954	Eefsec	99	70.356	ENSACLG00000024565	eefsec	98	66.667	Astatotilapia_calliptera
ENSRNOG00000012954	Eefsec	98	71.774	ENSAMXG00000002260	eefsec	97	63.069	Astyanax_mexicanus
ENSRNOG00000012954	Eefsec	100	88.803	ENSBTAG00000030962	EEFSEC	100	87.097	Bos_taurus
ENSRNOG00000012954	Eefsec	79	44.681	WBGene00008133	efsc-1	90	32.190	Caenorhabditis_elegans
ENSRNOG00000012954	Eefsec	100	87.437	ENSCJAG00000005387	EEFSEC	100	87.437	Callithrix_jacchus
ENSRNOG00000012954	Eefsec	99	86.957	ENSCAFG00000004135	EEFSEC	81	87.188	Canis_familiaris
ENSRNOG00000012954	Eefsec	100	87.022	ENSCAFG00020004811	EEFSEC	100	87.188	Canis_lupus_dingo
ENSRNOG00000012954	Eefsec	100	89.600	ENSCHIG00000021838	EEFSEC	100	85.788	Capra_hircus
ENSRNOG00000012954	Eefsec	100	88.107	ENSTSYG00000012922	EEFSEC	100	88.107	Carlito_syrichta
ENSRNOG00000012954	Eefsec	84	81.263	ENSCAPG00000000084	EEFSEC	98	81.263	Cavia_aperea
ENSRNOG00000012954	Eefsec	100	88.930	ENSCPOG00000024352	EEFSEC	100	94.757	Cavia_porcellus
ENSRNOG00000012954	Eefsec	100	88.793	ENSCCAG00000031336	EEFSEC	100	87.980	Cebus_capucinus
ENSRNOG00000012954	Eefsec	100	88.275	ENSCATG00000019414	EEFSEC	100	89.897	Cercocebus_atys
ENSRNOG00000012954	Eefsec	100	90.037	ENSCLAG00000006973	EEFSEC	100	95.880	Chinchilla_lanigera
ENSRNOG00000012954	Eefsec	100	88.107	ENSCSAG00000008599	EEFSEC	100	88.107	Chlorocebus_sabaeus
ENSRNOG00000012954	Eefsec	99	83.065	ENSCPBG00000014356	EEFSEC	82	82.937	Chrysemys_picta_bellii
ENSRNOG00000012954	Eefsec	98	63.359	ENSCSAVG00000002208	-	100	56.803	Ciona_savignyi
ENSRNOG00000012954	Eefsec	100	87.772	ENSCANG00000031492	EEFSEC	99	87.772	Colobus_angolensis_palliatus
ENSRNOG00000012954	Eefsec	100	98.400	ENSCGRG00001018089	Eefsec	100	96.398	Cricetulus_griseus_chok1gshd
ENSRNOG00000012954	Eefsec	100	96.800	ENSCGRG00000010063	Eefsec	100	97.368	Cricetulus_griseus_crigri
ENSRNOG00000012954	Eefsec	99	70.751	ENSCSEG00000003008	eefsec	99	66.788	Cynoglossus_semilaevis
ENSRNOG00000012954	Eefsec	99	69.685	ENSCVAG00000005381	eefsec	99	62.732	Cyprinodon_variegatus
ENSRNOG00000012954	Eefsec	99	72.332	ENSDARG00000004696	eefsec	99	63.866	Danio_rerio
ENSRNOG00000012954	Eefsec	100	81.619	ENSDNOG00000008925	EEFSEC	100	81.681	Dasypus_novemcinctus
ENSRNOG00000012954	Eefsec	84	71.894	ENSDORG00000000264	Eefsec	99	87.629	Dipodomys_ordii
ENSRNOG00000012954	Eefsec	83	54.733	FBgn0034627	eEFSec	95	45.698	Drosophila_melanogaster
ENSRNOG00000012954	Eefsec	99	76.728	ENSETEG00000007406	EEFSEC	99	76.728	Echinops_telfairi
ENSRNOG00000012954	Eefsec	77	68.817	ENSEBUG00000015029	eefsec	98	49.278	Eptatretus_burgeri
ENSRNOG00000012954	Eefsec	100	88.255	ENSEASG00005006786	EEFSEC	100	88.462	Equus_asinus_asinus
ENSRNOG00000012954	Eefsec	100	88.255	ENSECAG00000016565	EEFSEC	100	88.462	Equus_caballus
ENSRNOG00000012954	Eefsec	99	63.370	ENSELUG00000016632	eefsec	98	61.448	Esox_lucius
ENSRNOG00000012954	Eefsec	100	87.145	ENSFCAG00000006153	EEFSEC	100	87.479	Felis_catus
ENSRNOG00000012954	Eefsec	74	86.624	ENSFALG00000007901	EEFSEC	99	76.122	Ficedula_albicollis
ENSRNOG00000012954	Eefsec	84	87.984	ENSFDAG00000010243	EEFSEC	100	95.395	Fukomys_damarensis
ENSRNOG00000012954	Eefsec	99	70.751	ENSFHEG00000007155	eefsec	98	63.514	Fundulus_heteroclitus
ENSRNOG00000012954	Eefsec	99	64.940	ENSGMOG00000007705	eefsec	98	60.616	Gadus_morhua
ENSRNOG00000012954	Eefsec	99	82.329	ENSGALG00000038684	EEFSEC	99	75.773	Gallus_gallus
ENSRNOG00000012954	Eefsec	99	69.291	ENSGAFG00000021692	eefsec	99	62.162	Gambusia_affinis
ENSRNOG00000012954	Eefsec	99	69.721	ENSGACG00000000793	eefsec	99	62.857	Gasterosteus_aculeatus
ENSRNOG00000012954	Eefsec	99	83.065	ENSGAGG00000002059	EEFSEC	98	75.514	Gopherus_agassizii
ENSRNOG00000012954	Eefsec	89	90.019	ENSGGOG00000001445	EEFSEC	100	90.019	Gorilla_gorilla
ENSRNOG00000012954	Eefsec	99	70.356	ENSHBUG00000008917	eefsec	97	65.056	Haplochromis_burtoni
ENSRNOG00000012954	Eefsec	100	89.299	ENSHGLG00000000094	EEFSEC	100	95.395	Heterocephalus_glaber_female
ENSRNOG00000012954	Eefsec	100	89.299	ENSHGLG00100011393	EEFSEC	96	88.699	Heterocephalus_glaber_male
ENSRNOG00000012954	Eefsec	98	67.407	ENSHCOG00000004193	eefsec	99	63.185	Hippocampus_comes
ENSRNOG00000012954	Eefsec	99	71.486	ENSIPUG00000017291	eefsec	97	66.603	Ictalurus_punctatus
ENSRNOG00000012954	Eefsec	84	85.947	ENSSTOG00000019802	EEFSEC	99	93.421	Ictidomys_tridecemlineatus
ENSRNOG00000012954	Eefsec	73	96.241	ENSJJAG00000020703	-	100	96.711	Jaculus_jaculus
ENSRNOG00000012954	Eefsec	99	69.758	ENSKMAG00000019907	eefsec	98	63.311	Kryptolebias_marmoratus
ENSRNOG00000012954	Eefsec	98	70.518	ENSLBEG00000017908	eefsec	98	62.901	Labrus_bergylta
ENSRNOG00000012954	Eefsec	80	80.226	ENSLACG00000013137	EEFSEC	96	68.824	Latimeria_chalumnae
ENSRNOG00000012954	Eefsec	98	75.200	ENSLOCG00000014535	eefsec	98	64.966	Lepisosteus_oculatus
ENSRNOG00000012954	Eefsec	99	84.418	ENSLAFG00000001997	EEFSEC	100	85.274	Loxodonta_africana
ENSRNOG00000012954	Eefsec	100	88.610	ENSMFAG00000042128	EEFSEC	100	88.610	Macaca_fascicularis
ENSRNOG00000012954	Eefsec	83	90.103	ENSMMUG00000018663	EEFSEC	100	90.103	Macaca_mulatta
ENSRNOG00000012954	Eefsec	100	88.777	ENSMNEG00000028574	EEFSEC	100	88.777	Macaca_nemestrina
ENSRNOG00000012954	Eefsec	85	89.718	ENSMLEG00000041771	EEFSEC	93	89.718	Mandrillus_leucophaeus
ENSRNOG00000012954	Eefsec	98	71.371	ENSMAMG00000023964	eefsec	99	67.286	Mastacembelus_armatus
ENSRNOG00000012954	Eefsec	99	66.667	ENSMZEG00005009380	eefsec	98	66.667	Maylandia_zebra
ENSRNOG00000012954	Eefsec	67	75.318	ENSMGAG00000007243	EEFSEC	100	75.318	Meleagris_gallopavo
ENSRNOG00000012954	Eefsec	89	95.962	ENSMAUG00000011197	Eefsec	100	97.744	Mesocricetus_auratus
ENSRNOG00000012954	Eefsec	100	96.226	ENSMOCG00000017748	Eefsec	100	98.120	Microtus_ochrogaster
ENSRNOG00000012954	Eefsec	99	67.302	ENSMMOG00000021820	eefsec	99	67.209	Mola_mola
ENSRNOG00000012954	Eefsec	96	88.636	ENSMODG00000008034	EEFSEC	91	82.649	Monodelphis_domestica
ENSRNOG00000012954	Eefsec	96	70.916	ENSMALG00000016211	eefsec	99	65.242	Monopterus_albus
ENSRNOG00000012954	Eefsec	100	97.427	MGP_CAROLIEiJ_G0028627	Eefsec	100	100.000	Mus_caroli
ENSRNOG00000012954	Eefsec	100	97.599	ENSMUSG00000033216	Eefsec	100	99.624	Mus_musculus
ENSRNOG00000012954	Eefsec	100	97.427	MGP_PahariEiJ_G0022366	Eefsec	100	100.000	Mus_pahari
ENSRNOG00000012954	Eefsec	100	97.770	MGP_SPRETEiJ_G0029640	Eefsec	100	99.624	Mus_spretus
ENSRNOG00000012954	Eefsec	99	86.723	ENSMPUG00000017340	EEFSEC	96	86.891	Mustela_putorius_furo
ENSRNOG00000012954	Eefsec	85	88.081	ENSMLUG00000004261	EEFSEC	100	88.081	Myotis_lucifugus
ENSRNOG00000012954	Eefsec	73	97.368	ENSNGAG00000023278	-	100	97.368	Nannospalax_galili
ENSRNOG00000012954	Eefsec	99	70.751	ENSNBRG00000002387	eefsec	98	67.213	Neolamprologus_brichardi
ENSRNOG00000012954	Eefsec	100	88.275	ENSNLEG00000014303	EEFSEC	100	88.275	Nomascus_leucogenys
ENSRNOG00000012954	Eefsec	75	93.038	ENSMEUG00000005747	EEFSEC	100	79.022	Notamacropus_eugenii
ENSRNOG00000012954	Eefsec	99	88.007	ENSOPRG00000011276	EEFSEC	100	88.007	Ochotona_princeps
ENSRNOG00000012954	Eefsec	100	88.561	ENSODEG00000002928	EEFSEC	100	94.382	Octodon_degus
ENSRNOG00000012954	Eefsec	83	60.685	ENSONIG00000019038	eefsec	100	61.245	Oreochromis_niloticus
ENSRNOG00000012954	Eefsec	83	76.860	ENSOANG00000009108	EEFSEC	99	76.860	Ornithorhynchus_anatinus
ENSRNOG00000012954	Eefsec	100	87.395	ENSOCUG00000016517	EEFSEC	100	87.395	Oryctolagus_cuniculus
ENSRNOG00000012954	Eefsec	99	69.565	ENSORLG00000001377	eefsec	98	65.940	Oryzias_latipes
ENSRNOG00000012954	Eefsec	99	69.565	ENSORLG00020000729	eefsec	98	69.565	Oryzias_latipes_hni
ENSRNOG00000012954	Eefsec	99	69.565	ENSORLG00015001986	eefsec	98	62.669	Oryzias_latipes_hsok
ENSRNOG00000012954	Eefsec	84	60.887	ENSOMEG00000010071	eefsec	89	61.000	Oryzias_melastigma
ENSRNOG00000012954	Eefsec	75	89.679	ENSOGAG00000014084	EEFSEC	97	89.679	Otolemur_garnettii
ENSRNOG00000012954	Eefsec	65	86.737	ENSOARG00000004600	EEFSEC	100	86.772	Ovis_aries
ENSRNOG00000012954	Eefsec	100	88.777	ENSPPAG00000030936	EEFSEC	100	88.777	Pan_paniscus
ENSRNOG00000012954	Eefsec	100	87.940	ENSPPRG00000002846	EEFSEC	100	88.107	Panthera_pardus
ENSRNOG00000012954	Eefsec	86	87.819	ENSPTIG00000013855	EEFSEC	92	87.819	Panthera_tigris_altaica
ENSRNOG00000012954	Eefsec	100	88.945	ENSPTRG00000015353	EEFSEC	100	88.945	Pan_troglodytes
ENSRNOG00000012954	Eefsec	100	88.777	ENSPANG00000017041	EEFSEC	100	88.777	Papio_anubis
ENSRNOG00000012954	Eefsec	99	74.206	ENSPKIG00000005220	eefsec	98	69.963	Paramormyrops_kingsleyae
ENSRNOG00000012954	Eefsec	89	78.846	ENSPSIG00000015135	EEFSEC	97	78.846	Pelodiscus_sinensis
ENSRNOG00000012954	Eefsec	99	66.667	ENSPMGG00000020300	eefsec	99	63.373	Periophthalmus_magnuspinnatus
ENSRNOG00000012954	Eefsec	100	95.197	ENSPEMG00000013677	Eefsec	100	97.744	Peromyscus_maniculatus_bairdii
ENSRNOG00000012954	Eefsec	85	73.123	ENSPMAG00000006779	eefsec	99	65.918	Petromyzon_marinus
ENSRNOG00000012954	Eefsec	73	92.763	ENSPCIG00000020494	EEFSEC	100	79.630	Phascolarctos_cinereus
ENSRNOG00000012954	Eefsec	99	69.721	ENSPFOG00000003748	eefsec	99	62.542	Poecilia_formosa
ENSRNOG00000012954	Eefsec	99	69.721	ENSPLAG00000018012	eefsec	99	62.542	Poecilia_latipinna
ENSRNOG00000012954	Eefsec	99	69.291	ENSPMEG00000001202	eefsec	99	62.563	Poecilia_mexicana
ENSRNOG00000012954	Eefsec	99	69.721	ENSPREG00000012235	eefsec	99	62.881	Poecilia_reticulata
ENSRNOG00000012954	Eefsec	100	87.940	ENSPPYG00000013436	EEFSEC	100	87.940	Pongo_abelii
ENSRNOG00000012954	Eefsec	89	76.981	ENSPCAG00000005883	EEFSEC	100	76.981	Procavia_capensis
ENSRNOG00000012954	Eefsec	100	87.023	ENSPCOG00000023432	EEFSEC	100	81.008	Propithecus_coquereli
ENSRNOG00000012954	Eefsec	100	87.500	ENSPVAG00000007070	EEFSEC	65	87.405	Pteropus_vampyrus
ENSRNOG00000012954	Eefsec	99	70.356	ENSPNYG00000005726	eefsec	98	66.940	Pundamilia_nyererei
ENSRNOG00000012954	Eefsec	99	71.146	ENSPNAG00000016724	eefsec	99	62.857	Pygocentrus_nattereri
ENSRNOG00000012954	Eefsec	100	87.940	ENSRBIG00000032635	EEFSEC	100	87.940	Rhinopithecus_bieti
ENSRNOG00000012954	Eefsec	69	95.181	ENSRROG00000030260	-	89	90.566	Rhinopithecus_roxellana
ENSRNOG00000012954	Eefsec	83	89.691	ENSSBOG00000031478	EEFSEC	100	89.691	Saimiri_boliviensis_boliviensis
ENSRNOG00000012954	Eefsec	73	92.763	ENSSHAG00000014760	EEFSEC	100	78.601	Sarcophilus_harrisii
ENSRNOG00000012954	Eefsec	98	72.000	ENSSFOG00015021109	eefsec	98	62.438	Scleropages_formosus
ENSRNOG00000012954	Eefsec	99	71.600	ENSSMAG00000001454	eefsec	99	62.919	Scophthalmus_maximus
ENSRNOG00000012954	Eefsec	99	71.371	ENSSDUG00000007924	eefsec	99	68.199	Seriola_dumerili
ENSRNOG00000012954	Eefsec	96	70.968	ENSSLDG00000024985	eefsec	98	62.607	Seriola_lalandi_dorsalis
ENSRNOG00000012954	Eefsec	50	88.235	ENSSARG00000003789	-	56	88.235	Sorex_araneus
ENSRNOG00000012954	Eefsec	73	85.430	ENSSPUG00000004191	EEFSEC	100	73.140	Sphenodon_punctatus
ENSRNOG00000012954	Eefsec	99	70.356	ENSSPAG00000001320	eefsec	99	66.120	Stegastes_partitus
ENSRNOG00000012954	Eefsec	100	89.883	ENSSSCG00000011619	EEFSEC	100	88.919	Sus_scrofa
ENSRNOG00000012954	Eefsec	99	83.333	ENSTGUG00000007895	EEFSEC	100	76.581	Taeniopygia_guttata
ENSRNOG00000012954	Eefsec	99	70.400	ENSTRUG00000010327	eefsec	98	62.500	Takifugu_rubripes
ENSRNOG00000012954	Eefsec	99	70.916	ENSTNIG00000003225	eefsec	99	62.963	Tetraodon_nigroviridis
ENSRNOG00000012954	Eefsec	100	88.803	ENSTTRG00000000994	EEFSEC	100	86.486	Tursiops_truncatus
ENSRNOG00000012954	Eefsec	100	88.442	ENSUAMG00000017283	EEFSEC	100	88.442	Ursus_americanus
ENSRNOG00000012954	Eefsec	74	90.300	ENSVVUG00000018372	EEFSEC	91	90.300	Vulpes_vulpes
ENSRNOG00000012954	Eefsec	80	75.480	ENSXETG00000002066	eefsec	99	75.480	Xenopus_tropicalis
ENSRNOG00000012954	Eefsec	99	70.079	ENSXCOG00000019916	eefsec	99	62.500	Xiphophorus_couchianus
ENSRNOG00000012954	Eefsec	99	69.685	ENSXMAG00000001839	eefsec	99	62.500	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000049	tRNA binding	-	IEA	Function
GO:0000049	tRNA binding	-	ISO	Function
GO:0001514	selenocysteine incorporation	21873635.	IBA	Process
GO:0001514	selenocysteine incorporation	-	ISO	Process
GO:0003746	translation elongation factor activity	21873635.	IBA	Function
GO:0003746	translation elongation factor activity	-	ISO	Function
GO:0003924	GTPase activity	-	IEA	Function
GO:0003924	GTPase activity	-	ISO	Function
GO:0003924	GTPase activity	-	TAS	Function
GO:0005525	GTP binding	-	IEA	Function
GO:0005525	GTP binding	-	ISO	Function
GO:0005829	cytosol	-	TAS	Component
GO:0006414	translational elongation	21873635.	IBA	Process
GO:0035368	selenocysteine insertion sequence binding	-	IEA	Function
GO:0035368	selenocysteine insertion sequence binding	-	ISO	Function
GO:0043021	ribonucleoprotein complex binding	-	IEA	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:1990904	ribonucleoprotein complex	-	IEA	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component