EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000012994 (Gene tree)
Gene ID: 315554
Gene Symbol: Pus3
Alias: LOC315554|RGD1310757
Full Name: pseudouridine synthase 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 2186 bases
Position: chr8:36766977-36769162
Accession: 1310757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017648	PseudoU_synth_1	PF01416.20	2.6e-34	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017648	-	1686	XM_006242785	ENSRNOP00000017648	479 (aa)	XP_006242847	B0BN58

Gene Model

Click here to download ENSRNOG00000012994's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000012994's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000012994	Pus3	99	83.857	ENSG00000110060	PUS3	100	83.577	Homo_sapiens
ENSRNOG00000012994	Pus3	89	53.846	ENSAPOG00000019483	pus3	93	53.953	Acanthochromis_polyacanthus
ENSRNOG00000012994	Pus3	99	83.992	ENSAMEG00000000144	PUS3	99	83.992	Ailuropoda_melanoleuca
ENSRNOG00000012994	Pus3	69	62.857	ENSACIG00000024479	pus3	95	63.889	Amphilophus_citrinellus
ENSRNOG00000012994	Pus3	89	50.547	ENSAOCG00000006589	pus3	91	50.655	Amphiprion_ocellaris
ENSRNOG00000012994	Pus3	89	51.209	ENSAPEG00000014617	pus3	91	51.876	Amphiprion_percula
ENSRNOG00000012994	Pus3	89	52.045	ENSATEG00000022731	pus3	90	52.154	Anabas_testudineus
ENSRNOG00000012994	Pus3	91	67.706	ENSAPLG00000013285	PUS3	100	67.706	Anas_platyrhynchos
ENSRNOG00000012994	Pus3	93	67.857	ENSACAG00000000186	PUS3	97	67.857	Anolis_carolinensis
ENSRNOG00000012994	Pus3	99	82.983	ENSANAG00000035614	PUS3	99	82.983	Aotus_nancymaae
ENSRNOG00000012994	Pus3	88	50.000	ENSACLG00000007356	pus3	98	48.255	Astatotilapia_calliptera
ENSRNOG00000012994	Pus3	89	52.135	ENSAMXG00000019534	pus3	90	52.242	Astyanax_mexicanus
ENSRNOG00000012994	Pus3	100	82.195	ENSBTAG00000014339	PUS3	100	82.195	Bos_taurus
ENSRNOG00000012994	Pus3	73	37.222	WBGene00006473	tag-124	88	37.222	Caenorhabditis_elegans
ENSRNOG00000012994	Pus3	99	83.403	ENSCJAG00000046645	PUS3	99	83.403	Callithrix_jacchus
ENSRNOG00000012994	Pus3	99	83.368	ENSCAFG00000010534	PUS3	99	83.368	Canis_familiaris
ENSRNOG00000012994	Pus3	99	83.368	ENSCAFG00020010659	PUS3	99	83.368	Canis_lupus_dingo
ENSRNOG00000012994	Pus3	100	83.644	ENSCHIG00000012260	PUS3	100	83.644	Capra_hircus
ENSRNOG00000012994	Pus3	100	82.988	ENSTSYG00000014744	PUS3	99	82.988	Carlito_syrichta
ENSRNOG00000012994	Pus3	100	79.210	ENSCAPG00000012231	PUS3	100	79.210	Cavia_aperea
ENSRNOG00000012994	Pus3	100	79.210	ENSCPOG00000032587	PUS3	100	79.210	Cavia_porcellus
ENSRNOG00000012994	Pus3	100	82.328	ENSCCAG00000035999	PUS3	100	82.328	Cebus_capucinus
ENSRNOG00000012994	Pus3	99	83.229	ENSCATG00000043123	PUS3	99	83.229	Cercocebus_atys
ENSRNOG00000012994	Pus3	100	83.402	ENSCLAG00000014947	PUS3	100	83.402	Chinchilla_lanigera
ENSRNOG00000012994	Pus3	99	83.438	ENSCSAG00000002281	PUS3	99	83.438	Chlorocebus_sabaeus
ENSRNOG00000012994	Pus3	78	83.871	ENSCHOG00000008442	PUS3	98	83.871	Choloepus_hoffmanni
ENSRNOG00000012994	Pus3	56	68.214	ENSCPBG00000011173	PUS3	98	68.214	Chrysemys_picta_bellii
ENSRNOG00000012994	Pus3	81	32.160	ENSCING00000009062	-	80	32.160	Ciona_intestinalis
ENSRNOG00000012994	Pus3	85	36.170	ENSCSAVG00000002211	-	95	36.643	Ciona_savignyi
ENSRNOG00000012994	Pus3	99	82.180	ENSCANG00000038729	PUS3	99	82.180	Colobus_angolensis_palliatus
ENSRNOG00000012994	Pus3	100	91.042	ENSCGRG00001019842	Pus3	100	91.042	Cricetulus_griseus_chok1gshd
ENSRNOG00000012994	Pus3	100	90.625	ENSCGRG00000010155	Pus3	100	90.625	Cricetulus_griseus_crigri
ENSRNOG00000012994	Pus3	89	52.194	ENSCSEG00000007948	pus3	89	52.194	Cynoglossus_semilaevis
ENSRNOG00000012994	Pus3	89	50.547	ENSCVAG00000022150	pus3	90	50.547	Cyprinodon_variegatus
ENSRNOG00000012994	Pus3	89	55.093	ENSDARG00000028976	pus3	95	53.043	Danio_rerio
ENSRNOG00000012994	Pus3	97	81.741	ENSDNOG00000040719	PUS3	98	81.741	Dasypus_novemcinctus
ENSRNOG00000012994	Pus3	99	80.873	ENSDORG00000001819	Pus3	99	80.873	Dipodomys_ordii
ENSRNOG00000012994	Pus3	90	39.915	FBgn0034703	CG3045	89	39.915	Drosophila_melanogaster
ENSRNOG00000012994	Pus3	99	75.789	ENSETEG00000013067	PUS3	98	75.789	Echinops_telfairi
ENSRNOG00000012994	Pus3	86	48.980	ENSEBUG00000002154	pus3	60	55.122	Eptatretus_burgeri
ENSRNOG00000012994	Pus3	100	82.573	ENSEASG00005023003	PUS3	100	82.573	Equus_asinus_asinus
ENSRNOG00000012994	Pus3	100	82.780	ENSECAG00000007581	PUS3	100	82.780	Equus_caballus
ENSRNOG00000012994	Pus3	100	79.668	ENSEEUG00000010543	PUS3	100	79.668	Erinaceus_europaeus
ENSRNOG00000012994	Pus3	89	53.846	ENSELUG00000004425	pus3	92	53.950	Esox_lucius
ENSRNOG00000012994	Pus3	99	84.200	ENSFCAG00000005340	PUS3	99	84.200	Felis_catus
ENSRNOG00000012994	Pus3	98	62.292	ENSFALG00000005159	PUS3	99	62.292	Ficedula_albicollis
ENSRNOG00000012994	Pus3	100	82.365	ENSFDAG00000020745	PUS3	100	82.365	Fukomys_damarensis
ENSRNOG00000012994	Pus3	90	50.776	ENSFHEG00000010984	pus3	85	50.776	Fundulus_heteroclitus
ENSRNOG00000012994	Pus3	89	51.843	ENSGMOG00000004534	pus3	95	51.843	Gadus_morhua
ENSRNOG00000012994	Pus3	94	67.467	ENSGALG00000000962	PUS3	97	67.467	Gallus_gallus
ENSRNOG00000012994	Pus3	89	50.336	ENSGAFG00000005615	pus3	90	50.670	Gambusia_affinis
ENSRNOG00000012994	Pus3	89	51.945	ENSGACG00000002125	pus3	89	52.740	Gasterosteus_aculeatus
ENSRNOG00000012994	Pus3	99	67.409	ENSGAGG00000000160	PUS3	99	67.409	Gopherus_agassizii
ENSRNOG00000012994	Pus3	99	83.857	ENSGGOG00000015047	PUS3	99	83.857	Gorilla_gorilla
ENSRNOG00000012994	Pus3	88	49.558	ENSHBUG00000016532	pus3	98	47.844	Haplochromis_burtoni
ENSRNOG00000012994	Pus3	67	75.701	ENSHGLG00000015753	-	82	75.701	Heterocephalus_glaber_female
ENSRNOG00000012994	Pus3	57	68.248	ENSHGLG00000016285	-	100	68.248	Heterocephalus_glaber_female
ENSRNOG00000012994	Pus3	100	72.407	ENSHGLG00000018861	-	100	72.407	Heterocephalus_glaber_female
ENSRNOG00000012994	Pus3	100	82.988	ENSHGLG00000000565	PUS3	100	82.988	Heterocephalus_glaber_female
ENSRNOG00000012994	Pus3	99	75.468	ENSHGLG00000006599	-	97	75.468	Heterocephalus_glaber_female
ENSRNOG00000012994	Pus3	65	81.529	ENSHGLG00100008656	-	99	81.529	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	57	69.343	ENSHGLG00100002139	-	100	69.343	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	99	67.568	ENSHGLG00100007519	-	96	67.360	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	60	74.483	ENSHGLG00100002435	-	100	74.483	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	100	69.295	ENSHGLG00100011339	-	100	69.295	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	100	77.593	ENSHGLG00100014825	-	100	77.593	Heterocephalus_glaber_male
ENSRNOG00000012994	Pus3	89	52.315	ENSHCOG00000015705	pus3	92	52.304	Hippocampus_comes
ENSRNOG00000012994	Pus3	54	30.241	ENSIPUG00000010387	pus1	64	30.241	Ictalurus_punctatus
ENSRNOG00000012994	Pus3	89	52.740	ENSIPUG00000000105	pus3	89	52.847	Ictalurus_punctatus
ENSRNOG00000012994	Pus3	100	83.402	ENSSTOG00000003721	PUS3	100	83.402	Ictidomys_tridecemlineatus
ENSRNOG00000012994	Pus3	100	82.744	ENSJJAG00000011306	Pus3	99	82.744	Jaculus_jaculus
ENSRNOG00000012994	Pus3	89	49.339	ENSKMAG00000016715	pus3	91	49.451	Kryptolebias_marmoratus
ENSRNOG00000012994	Pus3	89	51.515	ENSLBEG00000004143	pus3	91	51.515	Labrus_bergylta
ENSRNOG00000012994	Pus3	56	30.034	ENSLACG00000016044	-	80	30.034	Latimeria_chalumnae
ENSRNOG00000012994	Pus3	96	60.499	ENSLACG00000011161	PUS3	96	60.499	Latimeria_chalumnae
ENSRNOG00000012994	Pus3	92	49.163	ENSLOCG00000011922	pus3	98	49.163	Lepisosteus_oculatus
ENSRNOG00000012994	Pus3	100	82.365	ENSLAFG00000000535	PUS3	100	82.365	Loxodonta_africana
ENSRNOG00000012994	Pus3	100	82.536	ENSMFAG00000041002	PUS3	100	82.536	Macaca_fascicularis
ENSRNOG00000012994	Pus3	100	82.536	ENSMMUG00000041875	PUS3	100	82.536	Macaca_mulatta
ENSRNOG00000012994	Pus3	100	82.744	ENSMNEG00000045347	PUS3	100	82.744	Macaca_nemestrina
ENSRNOG00000012994	Pus3	99	83.019	ENSMLEG00000029053	PUS3	99	83.019	Mandrillus_leucophaeus
ENSRNOG00000012994	Pus3	88	51.345	ENSMAMG00000016741	pus3	90	51.786	Mastacembelus_armatus
ENSRNOG00000012994	Pus3	88	50.000	ENSMZEG00005015950	pus3	98	48.255	Maylandia_zebra
ENSRNOG00000012994	Pus3	82	68.957	ENSMGAG00000000851	PUS3	99	68.957	Meleagris_gallopavo
ENSRNOG00000012994	Pus3	100	91.042	ENSMAUG00000015873	Pus3	100	91.042	Mesocricetus_auratus
ENSRNOG00000012994	Pus3	100	82.365	ENSMICG00000032941	PUS3	100	82.365	Microcebus_murinus
ENSRNOG00000012994	Pus3	100	90.208	ENSMOCG00000004901	Pus3	100	90.208	Microtus_ochrogaster
ENSRNOG00000012994	Pus3	89	54.042	ENSMMOG00000013909	pus3	89	54.483	Mola_mola
ENSRNOG00000012994	Pus3	92	75.730	ENSMODG00000004222	PUS3	99	75.730	Monodelphis_domestica
ENSRNOG00000012994	Pus3	89	53.687	ENSMALG00000022420	pus3	90	53.793	Monopterus_albus
ENSRNOG00000012994	Pus3	100	93.347	MGP_CAROLIEiJ_G0031957	Pus3	100	93.347	Mus_caroli
ENSRNOG00000012994	Pus3	99	92.708	ENSMUSG00000032103	Pus3	99	93.333	Mus_musculus
ENSRNOG00000012994	Pus3	100	92.100	MGP_PahariEiJ_G0014822	Pus3	100	92.516	Mus_pahari
ENSRNOG00000012994	Pus3	100	92.723	MGP_SPRETEiJ_G0033081	Pus3	100	92.723	Mus_spretus
ENSRNOG00000012994	Pus3	99	84.200	ENSMPUG00000006568	PUS3	99	84.200	Mustela_putorius_furo
ENSRNOG00000012994	Pus3	100	81.535	ENSMLUG00000030636	PUS3	100	81.535	Myotis_lucifugus
ENSRNOG00000012994	Pus3	99	85.654	ENSNGAG00000013868	Pus3	99	85.654	Nannospalax_galili
ENSRNOG00000012994	Pus3	88	49.779	ENSNBRG00000015864	pus3	92	49.890	Neolamprologus_brichardi
ENSRNOG00000012994	Pus3	99	83.019	ENSNLEG00000007460	PUS3	99	83.019	Nomascus_leucogenys
ENSRNOG00000012994	Pus3	98	62.917	ENSMEUG00000014040	PUS3	99	62.917	Notamacropus_eugenii
ENSRNOG00000012994	Pus3	100	81.705	ENSOPRG00000007888	-	99	81.705	Ochotona_princeps
ENSRNOG00000012994	Pus3	100	81.950	ENSODEG00000004280	PUS3	100	81.950	Octodon_degus
ENSRNOG00000012994	Pus3	91	52.370	ENSONIG00000016224	pus3	100	52.370	Oreochromis_niloticus
ENSRNOG00000012994	Pus3	96	66.237	ENSOANG00000000406	PUS3	96	66.237	Ornithorhynchus_anatinus
ENSRNOG00000012994	Pus3	97	82.553	ENSOCUG00000004468	PUS3	92	82.553	Oryctolagus_cuniculus
ENSRNOG00000012994	Pus3	89	48.894	ENSORLG00000008445	pus3	91	49.007	Oryzias_latipes
ENSRNOG00000012994	Pus3	89	48.894	ENSORLG00020008847	pus3	94	48.401	Oryzias_latipes_hni
ENSRNOG00000012994	Pus3	89	49.115	ENSORLG00015007438	pus3	94	48.614	Oryzias_latipes_hsok
ENSRNOG00000012994	Pus3	89	51.802	ENSOMEG00000014321	pus3	94	51.620	Oryzias_melastigma
ENSRNOG00000012994	Pus3	100	82.780	ENSOGAG00000008913	PUS3	100	82.780	Otolemur_garnettii
ENSRNOG00000012994	Pus3	100	83.437	ENSOARG00000011870	PUS3	100	83.437	Ovis_aries
ENSRNOG00000012994	Pus3	99	83.229	ENSPPAG00000025809	PUS3	99	83.229	Pan_paniscus
ENSRNOG00000012994	Pus3	99	83.784	ENSPPRG00000005662	PUS3	99	83.784	Panthera_pardus
ENSRNOG00000012994	Pus3	99	83.784	ENSPTIG00000001192	PUS3	99	83.784	Panthera_tigris_altaica
ENSRNOG00000012994	Pus3	99	83.648	ENSPTRG00000004449	PUS3	99	83.648	Pan_troglodytes
ENSRNOG00000012994	Pus3	99	83.229	ENSPANG00000013782	PUS3	99	83.229	Papio_anubis
ENSRNOG00000012994	Pus3	94	49.272	ENSPKIG00000000646	pus3	98	49.272	Paramormyrops_kingsleyae
ENSRNOG00000012994	Pus3	98	66.530	ENSPSIG00000013961	PUS3	98	66.530	Pelodiscus_sinensis
ENSRNOG00000012994	Pus3	81	53.964	ENSPMGG00000000911	pus3	86	53.964	Periophthalmus_magnuspinnatus
ENSRNOG00000012994	Pus3	100	90.852	ENSPEMG00000009602	Pus3	100	90.852	Peromyscus_maniculatus_bairdii
ENSRNOG00000012994	Pus3	98	74.214	ENSPCIG00000010225	PUS3	98	77.027	Phascolarctos_cinereus
ENSRNOG00000012994	Pus3	89	52.778	ENSPFOG00000009447	pus3	94	52.778	Poecilia_formosa
ENSRNOG00000012994	Pus3	89	51.339	ENSPLAG00000023343	pus3	90	51.339	Poecilia_latipinna
ENSRNOG00000012994	Pus3	89	51.339	ENSPMEG00000009870	pus3	90	51.339	Poecilia_mexicana
ENSRNOG00000012994	Pus3	65	56.250	ENSPREG00000003179	pus3	64	56.250	Poecilia_reticulata
ENSRNOG00000012994	Pus3	99	83.438	ENSPPYG00000004039	PUS3	99	83.438	Pongo_abelii
ENSRNOG00000012994	Pus3	99	80.249	ENSPCAG00000000441	PUS3	100	80.249	Procavia_capensis
ENSRNOG00000012994	Pus3	100	83.402	ENSPCOG00000019330	PUS3	100	83.402	Propithecus_coquereli
ENSRNOG00000012994	Pus3	100	81.328	ENSPVAG00000002606	PUS3	100	81.328	Pteropus_vampyrus
ENSRNOG00000012994	Pus3	88	50.221	ENSPNYG00000019615	pus3	98	48.049	Pundamilia_nyererei
ENSRNOG00000012994	Pus3	89	52.691	ENSPNAG00000014541	pus3	89	52.796	Pygocentrus_nattereri
ENSRNOG00000012994	Pus3	65	30.857	ENSPNAG00000003938	pus1	74	30.857	Pygocentrus_nattereri
ENSRNOG00000012994	Pus3	99	81.761	ENSRBIG00000044456	PUS3	99	81.761	Rhinopithecus_bieti
ENSRNOG00000012994	Pus3	99	82.809	ENSRROG00000035245	PUS3	99	82.809	Rhinopithecus_roxellana
ENSRNOG00000012994	Pus3	67	44.311	YFL001W	DEG1	71	44.311	Saccharomyces_cerevisiae
ENSRNOG00000012994	Pus3	99	82.636	ENSSBOG00000022433	PUS3	99	82.636	Saimiri_boliviensis_boliviensis
ENSRNOG00000012994	Pus3	98	73.795	ENSSHAG00000001382	PUS3	98	73.795	Sarcophilus_harrisii
ENSRNOG00000012994	Pus3	88	54.009	ENSSFOG00015004850	pus3	92	52.242	Scleropages_formosus
ENSRNOG00000012994	Pus3	89	50.000	ENSSMAG00000020340	pus3	91	50.328	Scophthalmus_maximus
ENSRNOG00000012994	Pus3	88	49.778	ENSSDUG00000020825	pus3	90	50.219	Seriola_dumerili
ENSRNOG00000012994	Pus3	88	50.885	ENSSLDG00000019932	pus3	90	50.993	Seriola_lalandi_dorsalis
ENSRNOG00000012994	Pus3	65	82.484	ENSSARG00000013826	PUS3	100	82.484	Sorex_araneus
ENSRNOG00000012994	Pus3	97	67.500	ENSSPUG00000001412	PUS3	98	67.500	Sphenodon_punctatus
ENSRNOG00000012994	Pus3	89	53.380	ENSSPAG00000019221	pus3	92	53.488	Stegastes_partitus
ENSRNOG00000012994	Pus3	99	82.121	ENSSSCG00000015222	PUS3	100	82.121	Sus_scrofa
ENSRNOG00000012994	Pus3	91	66.063	ENSTGUG00000000778	-	100	66.063	Taeniopygia_guttata
ENSRNOG00000012994	Pus3	89	49.780	ENSTRUG00000013050	pus3	95	49.780	Takifugu_rubripes
ENSRNOG00000012994	Pus3	75	50.909	ENSTNIG00000010307	pus3	93	50.909	Tetraodon_nigroviridis
ENSRNOG00000012994	Pus3	89	49.539	ENSTNIG00000004929	PUS3	90	49.539	Tetraodon_nigroviridis
ENSRNOG00000012994	Pus3	95	75.983	ENSTBEG00000004382	PUS3	100	75.983	Tupaia_belangeri
ENSRNOG00000012994	Pus3	100	84.407	ENSTTRG00000012167	PUS3	100	84.407	Tursiops_truncatus
ENSRNOG00000012994	Pus3	99	84.200	ENSUAMG00000009297	PUS3	99	84.200	Ursus_americanus
ENSRNOG00000012994	Pus3	99	84.407	ENSUMAG00000001795	PUS3	99	84.407	Ursus_maritimus
ENSRNOG00000012994	Pus3	98	82.875	ENSVPAG00000001495	PUS3	98	82.875	Vicugna_pacos
ENSRNOG00000012994	Pus3	99	83.576	ENSVVUG00000020152	PUS3	99	83.576	Vulpes_vulpes
ENSRNOG00000012994	Pus3	94	55.310	ENSXETG00000024532	pus3	85	55.310	Xenopus_tropicalis
ENSRNOG00000012994	Pus3	71	53.509	ENSXMAG00000025077	pus3	78	53.509	Xiphophorus_maculatus
ENSRNOG00000012994	Pus3	52	59.449	ENSXMAG00000025146	pus3	78	59.449	Xiphophorus_maculatus
ENSRNOG00000012994	Pus3	94	50.217	ENSXMAG00000028016	pus3	97	50.217	Xiphophorus_maculatus
ENSRNOG00000012994	Pus3	71	53.353	ENSXMAG00000029934	pus3	78	53.353	Xiphophorus_maculatus
ENSRNOG00000012994	Pus3	52	59.449	ENSXMAG00000028945	pus3	84	59.449	Xiphophorus_maculatus
ENSRNOG00000012994	Pus3	71	53.509	ENSXMAG00000025659	PUS3	52	56.452	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0009982	pseudouridine synthase activity	21873635.	IBA	Function
GO:0009982	pseudouridine synthase activity	-	ISO	Function
GO:0031119	tRNA pseudouridine synthesis	21873635.	IBA	Process
GO:0031119	tRNA pseudouridine synthesis	-	ISO	Process
GO:0106029	tRNA pseudouridine synthase activity	-	IEA	Function
GO:1990481	mRNA pseudouridine synthesis	21873635.	IBA	Process