EuRBPDB

Description

RBDs

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013148 (Gene tree)
Gene ID: 298429
Gene Symbol: Rad54l
Alias: LOC298429
Full Name: RAD54 like
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 29614 bases
Position: chr5:134948512-134978125
Accession: 1310600
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000018004	ResIII	PF04851.15	2.2e-10	1	1
ENSRNOP00000018004	DEAD	PF00270.29	2.4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000018004	-	2794	-	ENSRNOP00000018004	748 (aa)	-	B5DFE8

Gene Model

Click here to download ENSRNOG00000013148's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03440	Homologous recombination	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013148's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000013148	Rad54l	68	30.859	ENSRNOG00000017669	Chd1l	51	30.664
ENSRNOG00000013148	Rad54l	76	47.279	ENSRNOG00000039949	Rad54b	71	45.131

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013148	Rad54l	99	93.834	ENSG00000085999	RAD54L	100	96.000	Homo_sapiens
ENSRNOG00000013148	Rad54l	99	76.985	ENSAPOG00000011643	rad54l	99	76.985	Acanthochromis_polyacanthus
ENSRNOG00000013148	Rad54l	99	93.691	ENSAMEG00000013902	RAD54L	99	93.691	Ailuropoda_melanoleuca
ENSRNOG00000013148	Rad54l	99	77.181	ENSACIG00000001939	rad54l	99	77.181	Amphilophus_citrinellus
ENSRNOG00000013148	Rad54l	99	79.946	ENSAOCG00000017576	rad54l	99	79.946	Amphiprion_ocellaris
ENSRNOG00000013148	Rad54l	96	80.559	ENSAPEG00000020658	rad54l	97	81.392	Amphiprion_percula
ENSRNOG00000013148	Rad54l	94	81.792	ENSATEG00000006767	rad54l	99	81.792	Anabas_testudineus
ENSRNOG00000013148	Rad54l	94	86.040	ENSAPLG00000006389	RAD54L	99	86.040	Anas_platyrhynchos
ENSRNOG00000013148	Rad54l	99	83.534	ENSACAG00000002312	RAD54L	99	83.534	Anolis_carolinensis
ENSRNOG00000013148	Rad54l	99	93.566	ENSANAG00000035439	RAD54L	99	93.566	Aotus_nancymaae
ENSRNOG00000013148	Rad54l	99	76.676	ENSACLG00000018711	rad54l	99	76.676	Astatotilapia_calliptera
ENSRNOG00000013148	Rad54l	99	80.161	ENSAMXG00000012777	rad54l	99	80.161	Astyanax_mexicanus
ENSRNOG00000013148	Rad54l	99	93.984	ENSBTAG00000019901	RAD54L	99	93.984	Bos_taurus
ENSRNOG00000013148	Rad54l	93	58.106	WBGene00004298	rad-54	84	58.106	Caenorhabditis_elegans
ENSRNOG00000013148	Rad54l	99	90.775	ENSCJAG00000021080	RAD54L	95	90.775	Callithrix_jacchus
ENSRNOG00000013148	Rad54l	99	93.566	ENSCAFG00000004272	RAD54L	99	93.566	Canis_familiaris
ENSRNOG00000013148	Rad54l	99	93.557	ENSCAFG00020015066	RAD54L	99	93.557	Canis_lupus_dingo
ENSRNOG00000013148	Rad54l	99	93.708	ENSCHIG00000020118	RAD54L	99	93.708	Capra_hircus
ENSRNOG00000013148	Rad54l	99	93.574	ENSTSYG00000002032	RAD54L	99	93.574	Carlito_syrichta
ENSRNOG00000013148	Rad54l	99	94.244	ENSCPOG00000006768	RAD54L	99	94.244	Cavia_porcellus
ENSRNOG00000013148	Rad54l	99	94.236	ENSCCAG00000025783	RAD54L	99	94.236	Cebus_capucinus
ENSRNOG00000013148	Rad54l	99	93.700	ENSCATG00000030589	RAD54L	99	93.700	Cercocebus_atys
ENSRNOG00000013148	Rad54l	99	94.511	ENSCLAG00000004645	RAD54L	99	94.511	Chinchilla_lanigera
ENSRNOG00000013148	Rad54l	99	93.834	ENSCSAG00000001229	RAD54L	99	93.834	Chlorocebus_sabaeus
ENSRNOG00000013148	Rad54l	99	85.542	ENSCPBG00000005675	RAD54L	99	85.542	Chrysemys_picta_bellii
ENSRNOG00000013148	Rad54l	99	63.286	ENSCING00000024456	-	99	63.205	Ciona_intestinalis
ENSRNOG00000013148	Rad54l	99	63.117	ENSCSAVG00000010859	-	99	63.117	Ciona_savignyi
ENSRNOG00000013148	Rad54l	99	93.834	ENSCANG00000034891	RAD54L	99	93.834	Colobus_angolensis_palliatus
ENSRNOG00000013148	Rad54l	99	96.252	ENSCGRG00001014807	Rad54l	100	96.252	Cricetulus_griseus_chok1gshd
ENSRNOG00000013148	Rad54l	99	96.252	ENSCGRG00000016038	Rad54l	100	96.252	Cricetulus_griseus_crigri
ENSRNOG00000013148	Rad54l	99	77.315	ENSCSEG00000001983	rad54l	99	77.315	Cynoglossus_semilaevis
ENSRNOG00000013148	Rad54l	86	80.632	ENSCVAG00000019561	rad54l	99	80.632	Cyprinodon_variegatus
ENSRNOG00000013148	Rad54l	99	78.954	ENSDARG00000018623	rad54l	99	78.954	Danio_rerio
ENSRNOG00000013148	Rad54l	99	92.503	ENSDNOG00000003395	RAD54L	100	92.503	Dasypus_novemcinctus
ENSRNOG00000013148	Rad54l	99	84.148	ENSDORG00000002632	Rad54l	99	84.148	Dipodomys_ordii
ENSRNOG00000013148	Rad54l	99	55.718	FBgn0002989	okr	95	55.718	Drosophila_melanogaster
ENSRNOG00000013148	Rad54l	78	94.355	ENSETEG00000000550	RAD54L	78	94.355	Echinops_telfairi
ENSRNOG00000013148	Rad54l	99	93.154	ENSEASG00005004511	RAD54L	99	93.154	Equus_asinus_asinus
ENSRNOG00000013148	Rad54l	99	93.566	ENSECAG00000008760	RAD54L	99	94.309	Equus_caballus
ENSRNOG00000013148	Rad54l	99	87.684	ENSEEUG00000008113	RAD54L	100	87.684	Erinaceus_europaeus
ENSRNOG00000013148	Rad54l	99	80.107	ENSELUG00000002295	rad54l	99	80.107	Esox_lucius
ENSRNOG00000013148	Rad54l	99	93.173	ENSFCAG00000003444	RAD54L	100	93.173	Felis_catus
ENSRNOG00000013148	Rad54l	99	85.007	ENSFALG00000009480	RAD54L	99	85.007	Ficedula_albicollis
ENSRNOG00000013148	Rad54l	99	94.504	ENSFDAG00000007806	RAD54L	99	94.504	Fukomys_damarensis
ENSRNOG00000013148	Rad54l	61	76.652	ENSFHEG00000009824	rad54l	78	76.652	Fundulus_heteroclitus
ENSRNOG00000013148	Rad54l	99	78.255	ENSGMOG00000014568	rad54l	99	78.255	Gadus_morhua
ENSRNOG00000013148	Rad54l	99	84.316	ENSGALG00000010356	RAD54L	92	84.316	Gallus_gallus
ENSRNOG00000013148	Rad54l	91	77.876	ENSGAFG00000011110	rad54l	100	77.876	Gambusia_affinis
ENSRNOG00000013148	Rad54l	99	78.715	ENSGACG00000003111	rad54l	97	78.715	Gasterosteus_aculeatus
ENSRNOG00000013148	Rad54l	99	85.389	ENSGAGG00000014089	RAD54L	96	85.389	Gopherus_agassizii
ENSRNOG00000013148	Rad54l	99	93.700	ENSGGOG00000010602	RAD54L	99	93.700	Gorilla_gorilla
ENSRNOG00000013148	Rad54l	99	76.810	ENSHBUG00000007793	rad54l	99	76.810	Haplochromis_burtoni
ENSRNOG00000013148	Rad54l	99	93.968	ENSHGLG00000000753	RAD54L	99	93.968	Heterocephalus_glaber_female
ENSRNOG00000013148	Rad54l	99	93.834	ENSHGLG00100016987	RAD54L	99	93.834	Heterocephalus_glaber_male
ENSRNOG00000013148	Rad54l	99	77.867	ENSIPUG00000015999	rad54l	99	80.973	Ictalurus_punctatus
ENSRNOG00000013148	Rad54l	99	94.370	ENSSTOG00000029125	RAD54L	99	94.370	Ictidomys_tridecemlineatus
ENSRNOG00000013148	Rad54l	99	82.282	ENSJJAG00000000235	-	99	82.148	Jaculus_jaculus
ENSRNOG00000013148	Rad54l	99	77.957	ENSKMAG00000009944	rad54l	99	77.957	Kryptolebias_marmoratus
ENSRNOG00000013148	Rad54l	99	80.242	ENSLBEG00000014617	rad54l	99	81.898	Labrus_bergylta
ENSRNOG00000013148	Rad54l	99	81.099	ENSLOCG00000004144	rad54l	100	82.789	Lepisosteus_oculatus
ENSRNOG00000013148	Rad54l	99	94.497	ENSLAFG00000007583	RAD54L	99	94.497	Loxodonta_africana
ENSRNOG00000013148	Rad54l	99	93.700	ENSMFAG00000031241	RAD54L	99	93.700	Macaca_fascicularis
ENSRNOG00000013148	Rad54l	99	93.700	ENSMMUG00000011568	RAD54L	99	93.700	Macaca_mulatta
ENSRNOG00000013148	Rad54l	99	93.700	ENSMNEG00000038562	RAD54L	99	93.700	Macaca_nemestrina
ENSRNOG00000013148	Rad54l	99	93.834	ENSMLEG00000038145	RAD54L	99	93.834	Mandrillus_leucophaeus
ENSRNOG00000013148	Rad54l	99	79.250	ENSMAMG00000022180	rad54l	100	82.111	Mastacembelus_armatus
ENSRNOG00000013148	Rad54l	99	76.542	ENSMZEG00005018081	rad54l	99	76.542	Maylandia_zebra
ENSRNOG00000013148	Rad54l	99	84.295	ENSMGAG00000010634	RAD54L	99	84.295	Meleagris_gallopavo
ENSRNOG00000013148	Rad54l	99	95.984	ENSMAUG00000020076	Rad54l	100	95.984	Mesocricetus_auratus
ENSRNOG00000013148	Rad54l	99	95.040	ENSMICG00000003266	RAD54L	99	95.040	Microcebus_murinus
ENSRNOG00000013148	Rad54l	99	96.519	ENSMOCG00000001778	Rad54l	100	96.519	Microtus_ochrogaster
ENSRNOG00000013148	Rad54l	99	75.871	ENSMALG00000021148	rad54l	99	75.871	Monopterus_albus
ENSRNOG00000013148	Rad54l	99	92.708	MGP_CAROLIEiJ_G0026325	Rad54l	100	92.708	Mus_caroli
ENSRNOG00000013148	Rad54l	99	98.126	ENSMUSG00000028702	Rad54l	100	98.126	Mus_musculus
ENSRNOG00000013148	Rad54l	99	98.260	MGP_PahariEiJ_G0028657	Rad54l	100	98.260	Mus_pahari
ENSRNOG00000013148	Rad54l	99	97.992	MGP_SPRETEiJ_G0027297	Rad54l	100	97.992	Mus_spretus
ENSRNOG00000013148	Rad54l	99	93.039	ENSMPUG00000012883	RAD54L	99	93.039	Mustela_putorius_furo
ENSRNOG00000013148	Rad54l	99	94.497	ENSMLUG00000003763	RAD54L	99	94.497	Myotis_lucifugus
ENSRNOG00000013148	Rad54l	99	94.511	ENSNGAG00000024213	Rad54l	100	94.511	Nannospalax_galili
ENSRNOG00000013148	Rad54l	99	93.700	ENSNLEG00000016548	RAD54L	99	93.700	Nomascus_leucogenys
ENSRNOG00000013148	Rad54l	90	83.876	ENSMEUG00000006793	RAD54L	99	83.876	Notamacropus_eugenii
ENSRNOG00000013148	Rad54l	91	94.792	ENSOPRG00000016016	RAD54L	91	94.792	Ochotona_princeps
ENSRNOG00000013148	Rad54l	99	94.779	ENSODEG00000008519	RAD54L	99	94.779	Octodon_degus
ENSRNOG00000013148	Rad54l	99	76.676	ENSONIG00000007659	rad54l	99	76.676	Oreochromis_niloticus
ENSRNOG00000013148	Rad54l	99	93.842	ENSOCUG00000005229	RAD54L	100	93.842	Oryctolagus_cuniculus
ENSRNOG00000013148	Rad54l	99	77.315	ENSORLG00000002958	rad54l	99	78.255	Oryzias_latipes
ENSRNOG00000013148	Rad54l	99	78.389	ENSORLG00020006554	rad54l	99	81.085	Oryzias_latipes_hni
ENSRNOG00000013148	Rad54l	99	77.987	ENSORLG00015002907	rad54l	99	78.389	Oryzias_latipes_hsok
ENSRNOG00000013148	Rad54l	99	78.389	ENSOMEG00000007770	rad54l	99	78.389	Oryzias_melastigma
ENSRNOG00000013148	Rad54l	99	93.591	ENSOARG00000002264	RAD54L	99	93.591	Ovis_aries
ENSRNOG00000013148	Rad54l	99	93.566	ENSPPAG00000031222	RAD54L	99	93.566	Pan_paniscus
ENSRNOG00000013148	Rad54l	99	93.173	ENSPPRG00000010317	RAD54L	100	93.173	Panthera_pardus
ENSRNOG00000013148	Rad54l	99	93.173	ENSPTIG00000012200	RAD54L	100	93.173	Panthera_tigris_altaica
ENSRNOG00000013148	Rad54l	99	93.700	ENSPTRG00000000689	RAD54L	99	93.700	Pan_troglodytes
ENSRNOG00000013148	Rad54l	99	93.834	ENSPANG00000016295	RAD54L	99	93.834	Papio_anubis
ENSRNOG00000013148	Rad54l	99	76.613	ENSPKIG00000016172	rad54l	99	76.613	Paramormyrops_kingsleyae
ENSRNOG00000013148	Rad54l	99	85.230	ENSPSIG00000003258	RAD54L	99	85.230	Pelodiscus_sinensis
ENSRNOG00000013148	Rad54l	99	75.067	ENSPMGG00000016335	rad54l	99	75.067	Periophthalmus_magnuspinnatus
ENSRNOG00000013148	Rad54l	99	96.519	ENSPEMG00000011422	Rad54l	100	96.519	Peromyscus_maniculatus_bairdii
ENSRNOG00000013148	Rad54l	99	70.494	ENSPMAG00000007719	rad54l	99	70.494	Petromyzon_marinus
ENSRNOG00000013148	Rad54l	99	86.863	ENSPCIG00000029032	RAD54L	99	86.863	Phascolarctos_cinereus
ENSRNOG00000013148	Rad54l	85	80.472	ENSPFOG00000013732	rad54l	99	80.472	Poecilia_formosa
ENSRNOG00000013148	Rad54l	81	79.058	ENSPLAG00000023416	rad54l	99	79.058	Poecilia_latipinna
ENSRNOG00000013148	Rad54l	91	77.876	ENSPMEG00000008299	rad54l	100	77.876	Poecilia_mexicana
ENSRNOG00000013148	Rad54l	99	76.273	ENSPREG00000019955	rad54l	99	76.273	Poecilia_reticulata
ENSRNOG00000013148	Rad54l	93	92.376	ENSPPYG00000001398	RAD54L	99	92.376	Pongo_abelii
ENSRNOG00000013148	Rad54l	80	93.204	ENSPCAG00000005323	RAD54L	80	93.204	Procavia_capensis
ENSRNOG00000013148	Rad54l	99	94.779	ENSPCOG00000015423	RAD54L	100	94.779	Propithecus_coquereli
ENSRNOG00000013148	Rad54l	99	73.210	ENSPNYG00000002942	rad54l	99	73.210	Pundamilia_nyererei
ENSRNOG00000013148	Rad54l	99	79.357	ENSPNAG00000012483	rad54l	99	79.357	Pygocentrus_nattereri
ENSRNOG00000013148	Rad54l	99	93.834	ENSRBIG00000043495	RAD54L	99	93.834	Rhinopithecus_bieti
ENSRNOG00000013148	Rad54l	99	93.968	ENSRROG00000020844	RAD54L	99	93.968	Rhinopithecus_roxellana
ENSRNOG00000013148	Rad54l	80	48.372	YGL163C	RAD54	71	48.837	Saccharomyces_cerevisiae
ENSRNOG00000013148	Rad54l	99	94.236	ENSSBOG00000024672	RAD54L	99	94.236	Saimiri_boliviensis_boliviensis
ENSRNOG00000013148	Rad54l	99	86.933	ENSSHAG00000000110	RAD54L	99	86.933	Sarcophilus_harrisii
ENSRNOG00000013148	Rad54l	99	79.491	ENSSDUG00000019147	rad54l	99	79.491	Seriola_dumerili
ENSRNOG00000013148	Rad54l	99	79.759	ENSSLDG00000012330	rad54l	99	79.759	Seriola_lalandi_dorsalis
ENSRNOG00000013148	Rad54l	83	87.319	ENSSARG00000006689	RAD54L	100	87.319	Sorex_araneus
ENSRNOG00000013148	Rad54l	99	78.898	ENSSPAG00000011016	rad54l	99	78.898	Stegastes_partitus
ENSRNOG00000013148	Rad54l	99	93.298	ENSSSCG00000003905	RAD54L	99	93.298	Sus_scrofa
ENSRNOG00000013148	Rad54l	99	84.471	ENSTGUG00000008233	RAD54L	99	84.605	Taeniopygia_guttata
ENSRNOG00000013148	Rad54l	99	75.067	ENSTRUG00000008410	rad54l	99	75.067	Takifugu_rubripes
ENSRNOG00000013148	Rad54l	99	74.765	ENSTNIG00000004716	rad54l	99	74.765	Tetraodon_nigroviridis
ENSRNOG00000013148	Rad54l	99	85.810	ENSTTRG00000006315	RAD54L	100	85.810	Tursiops_truncatus
ENSRNOG00000013148	Rad54l	99	93.117	ENSUAMG00000011824	RAD54L	99	93.117	Ursus_americanus
ENSRNOG00000013148	Rad54l	99	92.038	ENSUMAG00000023603	RAD54L	99	92.038	Ursus_maritimus
ENSRNOG00000013148	Rad54l	99	93.566	ENSVVUG00000007201	RAD54L	99	93.566	Vulpes_vulpes
ENSRNOG00000013148	Rad54l	96	77.051	ENSXETG00000004369	rad54l	99	77.051	Xenopus_tropicalis
ENSRNOG00000013148	Rad54l	55	74.515	ENSXCOG00000016028	rad54l	81	78.533	Xiphophorus_couchianus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000724	double-strand break repair via homologous recombination	-	IEA	Process
GO:0000724	double-strand break repair via homologous recombination	-	ISO	Process
GO:0000733	DNA strand renaturation	-	IEA	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006302	double-strand break repair	-	ISO	Process
GO:0006974	cellular response to DNA damage stimulus	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0008340	determination of adult lifespan	-	IEA	Process
GO:0008340	determination of adult lifespan	-	ISO	Process
GO:0010212	response to ionizing radiation	-	IEA	Process
GO:0010212	response to ionizing radiation	-	ISO	Process
GO:0032991	protein-containing complex	-	IEA	Component
GO:0032991	protein-containing complex	-	ISO	Component
GO:0036310	annealing helicase activity	-	IEA	Function
GO:0036310	annealing helicase activity	-	ISO	Function
GO:0042493	response to drug	-	IEA	Process
GO:0042493	response to drug	-	ISO	Process
GO:0051276	chromosome organization	-	ISO	Process