EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000013180 (Gene tree)
Gene ID
291703
Gene Symbol
Ercc3
Alias
LOC291703|MGC112916
Full Name
ERCC excision repair 3%2C TFIIH core complex helicase subunit
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
30765 bases
Position
chr18:25037625-25068389
Accession
1307139
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000018422ResIIIPF04851.151.3e-1511
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000018422-2668-ENSRNOP00000018422782 (aa)-Q4G005
Gene Model
Click here to download ENSRNOG00000013180's gene model file
Pathways
Pathway IDPathway NameSource
rno03022Basal transcription factorsKEGG
rno03420Nucleotide excision repairKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013180's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000013180Ercc310095.908ENSG00000163161ERCC399100.000Homo_sapiens
ENSRNOG00000013180Ercc310088.422ENSAPOG00000014383ercc310088.295Acanthochromis_polyacanthus
ENSRNOG00000013180Ercc310095.652ENSAMEG00000016840ERCC310095.652Ailuropoda_melanoleuca
ENSRNOG00000013180Ercc39987.130ENSACIG00000000126ercc39887.979Amphilophus_citrinellus
ENSRNOG00000013180Ercc310088.422ENSAOCG00000009396ercc310088.422Amphiprion_ocellaris
ENSRNOG00000013180Ercc310088.422ENSAPEG00000023077ercc310088.422Amphiprion_percula
ENSRNOG00000013180Ercc310087.532ENSATEG00000014860ercc310087.532Anabas_testudineus
ENSRNOG00000013180Ercc39193.380ENSAPLG00000012068ERCC39893.380Anas_platyrhynchos
ENSRNOG00000013180Ercc39292.907ENSACAG00000009919ERCC310092.907Anolis_carolinensis
ENSRNOG00000013180Ercc310096.036ENSANAG00000031091ERCC310096.036Aotus_nancymaae
ENSRNOG00000013180Ercc310087.405ENSACLG00000022508ercc310086.896Astatotilapia_calliptera
ENSRNOG00000013180Ercc310088.138ENSAMXG00000036947ercc310087.628Astyanax_mexicanus
ENSRNOG00000013180Ercc310095.780ENSBTAG00000020777ERCC310095.780Bos_taurus
ENSRNOG00000013180Ercc39862.687WBGene00013441xpb-19764.729Caenorhabditis_elegans
ENSRNOG00000013180Ercc310096.036ENSCJAG00000010416ERCC310096.036Callithrix_jacchus
ENSRNOG00000013180Ercc310096.036ENSCAFG00000004497ERCC310096.036Canis_familiaris
ENSRNOG00000013180Ercc310096.036ENSCAFG00020003495ERCC310096.036Canis_lupus_dingo
ENSRNOG00000013180Ercc310095.908ENSCHIG00000014551ERCC310095.908Capra_hircus
ENSRNOG00000013180Ercc39995.472ENSTSYG00000004137ERCC39796.286Carlito_syrichta
ENSRNOG00000013180Ercc38980.372ENSCAPG00000017027ERCC310080.659Cavia_aperea
ENSRNOG00000013180Ercc310095.780ENSCPOG00000002144ERCC310095.780Cavia_porcellus
ENSRNOG00000013180Ercc310096.036ENSCCAG00000024421ERCC310096.036Cebus_capucinus
ENSRNOG00000013180Ercc310096.164ENSCATG00000032313ERCC310096.164Cercocebus_atys
ENSRNOG00000013180Ercc310096.419ENSCLAG00000002965ERCC39696.419Chinchilla_lanigera
ENSRNOG00000013180Ercc310096.036ENSCSAG00000016827ERCC310096.036Chlorocebus_sabaeus
ENSRNOG00000013180Ercc38397.076ENSCHOG00000007414ERCC38397.076Choloepus_hoffmanni
ENSRNOG00000013180Ercc39293.463ENSCPBG00000013638ERCC310093.463Chrysemys_picta_bellii
ENSRNOG00000013180Ercc39672.251ENSCING00000002867ercc39672.251Ciona_intestinalis
ENSRNOG00000013180Ercc310096.036ENSCANG00000007094ERCC310096.036Colobus_angolensis_palliatus
ENSRNOG00000013180Ercc310098.082ENSCGRG00001009426Ercc310098.082Cricetulus_griseus_chok1gshd
ENSRNOG00000013180Ercc39796.974ENSCGRG00000015547Ercc310096.974Cricetulus_griseus_crigri
ENSRNOG00000013180Ercc310086.277ENSCSEG00000016479ercc310086.277Cynoglossus_semilaevis
ENSRNOG00000013180Ercc310088.422ENSCVAG00000015177ercc310088.295Cyprinodon_variegatus
ENSRNOG00000013180Ercc39689.272ENSDARG00000002402ercc310087.389Danio_rerio
ENSRNOG00000013180Ercc35697.506ENSDNOG00000035027ERCC39597.506Dasypus_novemcinctus
ENSRNOG00000013180Ercc39696.950ENSDORG00000004671Ercc310096.164Dipodomys_ordii
ENSRNOG00000013180Ercc39968.875FBgn0001179hay9470.789Drosophila_melanogaster
ENSRNOG00000013180Ercc39096.486ENSETEG00000019887ERCC39096.486Echinops_telfairi
ENSRNOG00000013180Ercc310080.025ENSEBUG00000009773ercc310080.025Eptatretus_burgeri
ENSRNOG00000013180Ercc310093.766ENSEASG00005022466ERCC310093.766Equus_asinus_asinus
ENSRNOG00000013180Ercc310096.164ENSECAG00000006589ERCC310096.164Equus_caballus
ENSRNOG00000013180Ercc39394.543ENSEEUG00000001057ERCC39895.385Erinaceus_europaeus
ENSRNOG00000013180Ercc310086.132ENSELUG00000000089ercc39986.132Esox_lucius
ENSRNOG00000013180Ercc310096.164ENSFCAG00000006989ERCC310096.164Felis_catus
ENSRNOG00000013180Ercc39991.506ENSFALG00000003936ERCC39891.558Ficedula_albicollis
ENSRNOG00000013180Ercc310095.141ENSFDAG00000011924ERCC310095.141Fukomys_damarensis
ENSRNOG00000013180Ercc310087.532ENSFHEG00000005185ercc310087.277Fundulus_heteroclitus
ENSRNOG00000013180Ercc310084.694ENSGMOG00000018032ercc39984.439Gadus_morhua
ENSRNOG00000013180Ercc39692.185ENSGALG00000011515ERCC39991.774Gallus_gallus
ENSRNOG00000013180Ercc310088.168ENSGAFG00000011936ercc310087.913Gambusia_affinis
ENSRNOG00000013180Ercc310086.514ENSGACG00000015218ercc39987.654Gasterosteus_aculeatus
ENSRNOG00000013180Ercc39293.463ENSGAGG00000018579ERCC310093.463Gopherus_agassizii
ENSRNOG00000013180Ercc310096.036ENSGGOG00000015255ERCC310096.036Gorilla_gorilla
ENSRNOG00000013180Ercc310087.405ENSHBUG00000003818ercc310086.896Haplochromis_burtoni
ENSRNOG00000013180Ercc310096.419ENSHGLG00000011014ERCC310096.419Heterocephalus_glaber_female
ENSRNOG00000013180Ercc310096.419ENSHGLG00100013806ERCC310096.419Heterocephalus_glaber_male
ENSRNOG00000013180Ercc310087.261ENSHCOG00000016924ercc310086.369Hippocampus_comes
ENSRNOG00000013180Ercc310087.134ENSIPUG00000021000ercc310087.134Ictalurus_punctatus
ENSRNOG00000013180Ercc310096.419ENSSTOG00000011001ERCC310096.419Ictidomys_tridecemlineatus
ENSRNOG00000013180Ercc39095.461ENSJJAG00000001117Ercc310095.461Jaculus_jaculus
ENSRNOG00000013180Ercc310088.168ENSKMAG00000021764ercc310087.786Kryptolebias_marmoratus
ENSRNOG00000013180Ercc310087.134ENSLBEG00000000468ercc310086.879Labrus_bergylta
ENSRNOG00000013180Ercc39686.815ENSLACG00000014815ERCC310086.038Latimeria_chalumnae
ENSRNOG00000013180Ercc39481.720ENSLOCG00000010907ercc39281.720Lepisosteus_oculatus
ENSRNOG00000013180Ercc310095.908ENSLAFG00000014866ERCC310095.908Loxodonta_africana
ENSRNOG00000013180Ercc310096.164ENSMFAG00000003370ERCC310096.164Macaca_fascicularis
ENSRNOG00000013180Ercc310092.172ENSMNEG00000004215ERCC310092.172Macaca_nemestrina
ENSRNOG00000013180Ercc310096.164ENSMLEG00000042061ERCC310096.164Mandrillus_leucophaeus
ENSRNOG00000013180Ercc310087.786ENSMAMG00000004505ercc39987.659Mastacembelus_armatus
ENSRNOG00000013180Ercc310087.405ENSMZEG00005004854ercc310086.896Maylandia_zebra
ENSRNOG00000013180Ercc39093.191ENSMGAG00000011706ERCC310093.191Meleagris_gallopavo
ENSRNOG00000013180Ercc310097.318ENSMAUG00000004515Ercc310097.318Mesocricetus_auratus
ENSRNOG00000013180Ercc310097.059ENSMICG00000009578ERCC310097.059Microcebus_murinus
ENSRNOG00000013180Ercc310098.338ENSMOCG00000021767Ercc310098.338Microtus_ochrogaster
ENSRNOG00000013180Ercc39986.305ENSMMOG00000018174ercc39786.922Mola_mola
ENSRNOG00000013180Ercc39695.364ENSMODG00000018695ERCC310094.764Monodelphis_domestica
ENSRNOG00000013180Ercc310087.786ENSMALG00000014944ercc310087.023Monopterus_albus
ENSRNOG00000013180Ercc310099.233MGP_CAROLIEiJ_G0022075Ercc310099.233Mus_caroli
ENSRNOG00000013180Ercc310098.595ENSMUSG00000024382Ercc310098.595Mus_musculus
ENSRNOG00000013180Ercc310099.105MGP_PahariEiJ_G0018809Ercc310099.105Mus_pahari
ENSRNOG00000013180Ercc310098.851MGP_SPRETEiJ_G0022987Ercc310098.851Mus_spretus
ENSRNOG00000013180Ercc310096.419ENSMPUG00000012021ERCC310096.419Mustela_putorius_furo
ENSRNOG00000013180Ercc39290.608ENSMLUG00000007429ERCC39990.608Myotis_lucifugus
ENSRNOG00000013180Ercc39994.057ENSNGAG00000019598Ercc310097.429Nannospalax_galili
ENSRNOG00000013180Ercc310087.405ENSNBRG00000019074ercc310086.896Neolamprologus_brichardi
ENSRNOG00000013180Ercc39294.413ENSNLEG00000015665ERCC39794.413Nomascus_leucogenys
ENSRNOG00000013180Ercc310093.223ENSOPRG00000004553ERCC310093.223Ochotona_princeps
ENSRNOG00000013180Ercc310096.419ENSODEG00000005795ERCC310096.419Octodon_degus
ENSRNOG00000013180Ercc310087.405ENSONIG00000003255ercc310086.896Oreochromis_niloticus
ENSRNOG00000013180Ercc310096.419ENSOCUG00000002248ERCC310096.419Oryctolagus_cuniculus
ENSRNOG00000013180Ercc310087.786ENSORLG00000004393ercc310086.768Oryzias_latipes
ENSRNOG00000013180Ercc310087.659ENSORLG00020017718ercc310087.659Oryzias_latipes_hni
ENSRNOG00000013180Ercc310087.532ENSORLG00015015695ercc310086.768Oryzias_latipes_hsok
ENSRNOG00000013180Ercc310087.659ENSOMEG00000015374ercc310087.023Oryzias_melastigma
ENSRNOG00000013180Ercc310096.811ENSOGAG00000009103ERCC310096.811Otolemur_garnettii
ENSRNOG00000013180Ercc310095.780ENSOARG00000016147ERCC310095.780Ovis_aries
ENSRNOG00000013180Ercc310096.036ENSPPAG00000036166ERCC310096.036Pan_paniscus
ENSRNOG00000013180Ercc310096.292ENSPPRG00000001305ERCC310096.292Panthera_pardus
ENSRNOG00000013180Ercc39297.075ENSPTIG00000016969ERCC310097.075Panthera_tigris_altaica
ENSRNOG00000013180Ercc310096.036ENSPTRG00000046940ERCC310096.036Pan_troglodytes
ENSRNOG00000013180Ercc310096.164ENSPANG00000007699ERCC310096.164Papio_anubis
ENSRNOG00000013180Ercc310087.389ENSPKIG00000001319ercc39988.609Paramormyrops_kingsleyae
ENSRNOG00000013180Ercc39293.324ENSPSIG00000014682ERCC310093.324Pelodiscus_sinensis
ENSRNOG00000013180Ercc39690.053ENSPMGG00000017885ercc39988.520Periophthalmus_magnuspinnatus
ENSRNOG00000013180Ercc310098.210ENSPEMG00000013733Ercc310098.210Peromyscus_maniculatus_bairdii
ENSRNOG00000013180Ercc39078.881ENSPMAG00000005081ercc39978.881Petromyzon_marinus
ENSRNOG00000013180Ercc39995.349ENSPCIG00000011821ERCC310095.019Phascolarctos_cinereus
ENSRNOG00000013180Ercc39689.683ENSPFOG00000015604ercc310088.041Poecilia_formosa
ENSRNOG00000013180Ercc39686.939ENSPLAG00000022245ercc310089.751Poecilia_latipinna
ENSRNOG00000013180Ercc39689.683ENSPMEG00000016987ercc310088.041Poecilia_mexicana
ENSRNOG00000013180Ercc310088.550ENSPREG00000020921ercc310088.422Poecilia_reticulata
ENSRNOG00000013180Ercc310095.275ENSPPYG00000012769ERCC310095.275Pongo_abelii
ENSRNOG00000013180Ercc310097.059ENSPCOG00000024903ERCC310097.059Propithecus_coquereli
ENSRNOG00000013180Ercc39094.531ENSPVAG00000013774ERCC39094.531Pteropus_vampyrus
ENSRNOG00000013180Ercc310087.405ENSPNYG00000001208ercc310086.896Pundamilia_nyererei
ENSRNOG00000013180Ercc310088.153ENSPNAG00000005748ercc310087.643Pygocentrus_nattereri
ENSRNOG00000013180Ercc310095.908ENSRBIG00000027692ERCC310095.908Rhinopithecus_bieti
ENSRNOG00000013180Ercc310095.908ENSRROG00000040673ERCC310095.908Rhinopithecus_roxellana
ENSRNOG00000013180Ercc39155.874YIL143CSSL28556.456Saccharomyces_cerevisiae
ENSRNOG00000013180Ercc310095.780ENSSBOG00000023079ERCC310095.780Saimiri_boliviensis_boliviensis
ENSRNOG00000013180Ercc39695.232ENSSHAG00000007423ERCC310094.508Sarcophilus_harrisii
ENSRNOG00000013180Ercc39688.344ENSSFOG00015012753ercc310087.134Scleropages_formosus
ENSRNOG00000013180Ercc310085.878ENSSMAG00000011915ercc310085.878Scophthalmus_maximus
ENSRNOG00000013180Ercc310087.532ENSSDUG00000021181ercc310087.150Seriola_dumerili
ENSRNOG00000013180Ercc310087.532ENSSLDG00000008744ercc39887.150Seriola_lalandi_dorsalis
ENSRNOG00000013180Ercc36576.125ENSSARG00000000751-8585.912Sorex_araneus
ENSRNOG00000013180Ercc39092.340ENSSPUG00000015183ERCC39192.340Sphenodon_punctatus
ENSRNOG00000013180Ercc310088.041ENSSPAG00000004748ercc310087.913Stegastes_partitus
ENSRNOG00000013180Ercc310096.292ENSSSCG00000015721ERCC310097.120Sus_scrofa
ENSRNOG00000013180Ercc39992.377ENSTGUG00000004920-10093.023Taeniopygia_guttata
ENSRNOG00000013180Ercc310086.497ENSTRUG00000017185ercc310085.987Takifugu_rubripes
ENSRNOG00000013180Ercc39784.404ENSTNIG00000005457ercc39986.225Tetraodon_nigroviridis
ENSRNOG00000013180Ercc38096.480ENSTBEG00000009381ERCC38196.480Tupaia_belangeri
ENSRNOG00000013180Ercc36897.917ENSUAMG00000009589-10097.917Ursus_americanus
ENSRNOG00000013180Ercc310095.652ENSUMAG00000008361ERCC310095.652Ursus_maritimus
ENSRNOG00000013180Ercc39296.797ENSVVUG00000010431ERCC310096.797Vulpes_vulpes
ENSRNOG00000013180Ercc310090.076ENSXETG00000033646ercc310090.076Xenopus_tropicalis
ENSRNOG00000013180Ercc39988.273ENSXCOG00000001791ercc39789.153Xiphophorus_couchianus
ENSRNOG00000013180Ercc310088.422ENSXMAG00000003641ercc310088.295Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000112nucleotide-excision repair factor 3 complex21873635.IBAComponent
GO:0000439transcription factor TFIIH core complex21873635.IBAComponent
GO:0000439transcription factor TFIIH core complex8855220.IDAComponent
GO:0000717nucleotide-excision repair, DNA duplex unwinding-IEAProcess
GO:0000717nucleotide-excision repair, DNA duplex unwinding-ISOProcess
GO:0001666response to hypoxia9763211.IEPProcess
GO:0003677DNA binding-IEAFunction
GO:0004003ATP-dependent DNA helicase activity21873635.IBAFunction
GO:0004672protein kinase activity-ISOFunction
GO:0004672protein kinase activity-ISSFunction
GO:0005524ATP binding-IEAFunction
GO:0005634nucleus18543291.IDAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005669transcription factor TFIID complex-IEAComponent
GO:0005669transcription factor TFIID complex-ISOComponent
GO:0005675transcription factor TFIIH holo complex21873635.IBAComponent
GO:0005675transcription factor TFIIH holo complex-ISOComponent
GO:0005675transcription factor TFIIH holo complex-ISSComponent
GO:0006265DNA topological change-IEAProcess
GO:0006265DNA topological change-ISOProcess
GO:0006281DNA repair-ISOProcess
GO:0006283transcription-coupled nucleotide-excision repair-IEAProcess
GO:0006283transcription-coupled nucleotide-excision repair-ISOProcess
GO:0006289nucleotide-excision repair-ISOProcess
GO:0006366transcription by RNA polymerase II21873635.IBAProcess
GO:0006366transcription by RNA polymerase II-ISOProcess
GO:0006366transcription by RNA polymerase II-ISSProcess
GO:0006367transcription initiation from RNA polymerase II promoter21873635.IBAProcess
GO:0006468protein phosphorylation-IEAProcess
GO:0006915apoptotic process-IEAProcess
GO:0006915apoptotic process-ISOProcess
GO:0006979response to oxidative stress-IEAProcess
GO:0006979response to oxidative stress-ISOProcess
GO:0008022protein C-terminus binding-IEAFunction
GO:0008022protein C-terminus binding-ISOFunction
GO:0008094DNA-dependent ATPase activity-ISOFunction
GO:0008094DNA-dependent ATPase activity-ISSFunction
GO:0008104protein localization-IEAProcess
GO:0008104protein localization-ISOProcess
GO:0008134transcription factor binding21873635.IBAFunction
GO:0008134transcription factor binding-ISOFunction
GO:0008353RNA polymerase II CTD heptapeptide repeat kinase activity21873635.IBAFunction
GO:0008353RNA polymerase II CTD heptapeptide repeat kinase activity-ISOFunction
GO:0008353RNA polymerase II CTD heptapeptide repeat kinase activity-ISSFunction
GO:0009411response to UV21873635.IBAProcess
GO:0009411response to UV-ISOProcess
GO:0009650UV protection-IEAProcess
GO:0009650UV protection-ISOProcess
GO:0016887ATPase activity-ISOFunction
GO:0033683nucleotide-excision repair, DNA incision21873635.IBAProcess
GO:0033683nucleotide-excision repair, DNA incision-ISOProcess
GO:0035315hair cell differentiation21873635.IBAProcess
GO:0035315hair cell differentiation-ISOProcess
GO:0043065positive regulation of apoptotic process-IEAProcess
GO:0043065positive regulation of apoptotic process-ISOProcess
GO:00431383'-5' DNA helicase activity21873635.IBAFunction
GO:00431383'-5' DNA helicase activity-ISOFunction
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0047485protein N-terminus binding-IEAFunction
GO:0047485protein N-terminus binding-ISOFunction
GO:0048568embryonic organ development21873635.IBAProcess
GO:0048568embryonic organ development11425516.IEPProcess
GO:0097550transcriptional preinitiation complex21873635.IBAComponent
GO:1901990regulation of mitotic cell cycle phase transition-IEAProcess
GO:1901990regulation of mitotic cell cycle phase transition-ISOProcess

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