EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013216 (Gene tree)
Gene ID: 307643
Gene Symbol: Usb1
Alias: LOC307643|RGD1305215
Full Name: U6 snRNA biogenesis phosphodiesterase 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 13428 bases
Position: chr19:10105701-10119128
Accession: 1305215
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017960	HVSL	PF09749.9	9.3e-65	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017960	-	2141	-	ENSRNOP00000017960	267 (aa)	-	Q5I0I5

Gene Model

Click here to download ENSRNOG00000013216's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013216's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013216	Usb1	100	82.772	ENSG00000103005	USB1	100	85.047	Homo_sapiens
ENSRNOG00000013216	Usb1	98	49.104	ENSAPOG00000011942	usb1	99	49.104	Acanthochromis_polyacanthus
ENSRNOG00000013216	Usb1	100	81.413	ENSAMEG00000017205	USB1	100	81.413	Ailuropoda_melanoleuca
ENSRNOG00000013216	Usb1	85	55.310	ENSACIG00000012234	usb1	99	52.963	Amphilophus_citrinellus
ENSRNOG00000013216	Usb1	85	54.185	ENSAOCG00000014831	usb1	99	49.822	Amphiprion_ocellaris
ENSRNOG00000013216	Usb1	85	54.626	ENSAPEG00000000296	usb1	99	50.178	Amphiprion_percula
ENSRNOG00000013216	Usb1	95	50.593	ENSATEG00000009348	usb1	99	49.286	Anabas_testudineus
ENSRNOG00000013216	Usb1	84	67.401	ENSAPLG00000002756	USB1	100	67.257	Anas_platyrhynchos
ENSRNOG00000013216	Usb1	85	61.572	ENSACAG00000015481	USB1	100	61.572	Anolis_carolinensis
ENSRNOG00000013216	Usb1	100	83.895	ENSANAG00000035640	USB1	100	83.895	Aotus_nancymaae
ENSRNOG00000013216	Usb1	84	54.911	ENSACLG00000020586	usb1	99	48.929	Astatotilapia_calliptera
ENSRNOG00000013216	Usb1	84	50.667	ENSAMXG00000040146	usb1	95	46.021	Astyanax_mexicanus
ENSRNOG00000013216	Usb1	100	80.524	ENSBTAG00000015758	USB1	100	80.524	Bos_taurus
ENSRNOG00000013216	Usb1	100	83.895	ENSCJAG00000011733	USB1	100	83.895	Callithrix_jacchus
ENSRNOG00000013216	Usb1	99	79.779	ENSCAFG00000008556	USB1	73	79.779	Canis_familiaris
ENSRNOG00000013216	Usb1	99	80.970	ENSCAFG00020009263	USB1	99	80.970	Canis_lupus_dingo
ENSRNOG00000013216	Usb1	100	79.026	ENSCHIG00000024290	USB1	100	79.026	Capra_hircus
ENSRNOG00000013216	Usb1	100	82.022	ENSTSYG00000006997	USB1	100	83.146	Carlito_syrichta
ENSRNOG00000013216	Usb1	87	69.397	ENSCAPG00000009057	USB1	100	69.397	Cavia_aperea
ENSRNOG00000013216	Usb1	100	80.970	ENSCPOG00000014325	USB1	100	80.970	Cavia_porcellus
ENSRNOG00000013216	Usb1	100	84.644	ENSCCAG00000022132	USB1	100	84.644	Cebus_capucinus
ENSRNOG00000013216	Usb1	100	82.772	ENSCATG00000032174	USB1	100	83.521	Cercocebus_atys
ENSRNOG00000013216	Usb1	66	86.364	ENSCLAG00000007363	USB1	100	86.364	Chinchilla_lanigera
ENSRNOG00000013216	Usb1	100	83.146	ENSCSAG00000004783	USB1	100	83.895	Chlorocebus_sabaeus
ENSRNOG00000013216	Usb1	90	64.167	ENSCPBG00000026943	USB1	100	60.573	Chrysemys_picta_bellii
ENSRNOG00000013216	Usb1	82	30.222	ENSCSAVG00000000894	-	81	30.222	Ciona_savignyi
ENSRNOG00000013216	Usb1	100	81.648	ENSCANG00000037135	USB1	100	82.397	Colobus_angolensis_palliatus
ENSRNOG00000013216	Usb1	100	89.925	ENSCGRG00001011243	USB1	100	89.925	Cricetulus_griseus_chok1gshd
ENSRNOG00000013216	Usb1	100	89.925	ENSCGRG00000013252	USB1	100	89.925	Cricetulus_griseus_crigri
ENSRNOG00000013216	Usb1	98	47.636	ENSCSEG00000013881	usb1	99	47.636	Cynoglossus_semilaevis
ENSRNOG00000013216	Usb1	84	48.246	ENSCVAG00000009252	usb1	97	48.684	Cyprinodon_variegatus
ENSRNOG00000013216	Usb1	90	47.699	ENSDARG00000003841	usb1	99	44.727	Danio_rerio
ENSRNOG00000013216	Usb1	100	82.022	ENSDORG00000001888	Usb1	100	82.022	Dipodomys_ordii
ENSRNOG00000013216	Usb1	76	40.000	FBgn0037713	CG16790	97	35.379	Drosophila_melanogaster
ENSRNOG00000013216	Usb1	100	67.416	ENSETEG00000019682	USB1	100	67.416	Echinops_telfairi
ENSRNOG00000013216	Usb1	83	48.198	ENSEBUG00000005889	usb1	78	48.198	Eptatretus_burgeri
ENSRNOG00000013216	Usb1	100	82.022	ENSEASG00005005484	USB1	100	82.022	Equus_asinus_asinus
ENSRNOG00000013216	Usb1	100	82.022	ENSECAG00000019493	USB1	91	82.022	Equus_caballus
ENSRNOG00000013216	Usb1	66	76.705	ENSEEUG00000000154	USB1	66	76.705	Erinaceus_europaeus
ENSRNOG00000013216	Usb1	91	47.951	ENSELUG00000010974	usb1	99	45.520	Esox_lucius
ENSRNOG00000013216	Usb1	100	82.397	ENSFCAG00000002693	USB1	100	82.397	Felis_catus
ENSRNOG00000013216	Usb1	99	58.868	ENSFALG00000006876	USB1	99	58.868	Ficedula_albicollis
ENSRNOG00000013216	Usb1	100	83.146	ENSFDAG00000010052	USB1	100	83.146	Fukomys_damarensis
ENSRNOG00000013216	Usb1	88	45.455	ENSFHEG00000012334	usb1	91	47.845	Fundulus_heteroclitus
ENSRNOG00000013216	Usb1	84	52.466	ENSGMOG00000004228	usb1	99	52.466	Gadus_morhua
ENSRNOG00000013216	Usb1	84	65.625	ENSGALG00000035604	USB1	99	61.278	Gallus_gallus
ENSRNOG00000013216	Usb1	98	49.818	ENSGAFG00000021890	usb1	99	49.818	Gambusia_affinis
ENSRNOG00000013216	Usb1	97	47.308	ENSGACG00000003257	usb1	99	49.462	Gasterosteus_aculeatus
ENSRNOG00000013216	Usb1	100	62.774	ENSGAGG00000022572	USB1	100	62.774	Gopherus_agassizii
ENSRNOG00000013216	Usb1	100	83.146	ENSGGOG00000017147	USB1	100	83.146	Gorilla_gorilla
ENSRNOG00000013216	Usb1	85	55.066	ENSHBUG00000009823	usb1	99	49.104	Haplochromis_burtoni
ENSRNOG00000013216	Usb1	100	83.521	ENSHGLG00000016078	USB1	98	83.521	Heterocephalus_glaber_female
ENSRNOG00000013216	Usb1	100	83.521	ENSHGLG00100005562	USB1	98	83.521	Heterocephalus_glaber_male
ENSRNOG00000013216	Usb1	81	55.760	ENSHCOG00000015633	usb1	99	52.672	Hippocampus_comes
ENSRNOG00000013216	Usb1	98	46.528	ENSIPUG00000008601	usb1	99	46.528	Ictalurus_punctatus
ENSRNOG00000013216	Usb1	100	82.418	ENSSTOG00000007548	USB1	100	82.784	Ictidomys_tridecemlineatus
ENSRNOG00000013216	Usb1	100	88.015	ENSJJAG00000021859	Usb1	100	88.015	Jaculus_jaculus
ENSRNOG00000013216	Usb1	85	51.982	ENSKMAG00000007200	usb1	99	47.143	Kryptolebias_marmoratus
ENSRNOG00000013216	Usb1	74	54.040	ENSLBEG00000008452	usb1	64	54.737	Labrus_bergylta
ENSRNOG00000013216	Usb1	77	61.058	ENSLACG00000000105	USB1	91	53.409	Latimeria_chalumnae
ENSRNOG00000013216	Usb1	96	53.696	ENSLOCG00000000465	usb1	99	51.957	Lepisosteus_oculatus
ENSRNOG00000013216	Usb1	100	68.519	ENSLAFG00000002267	USB1	100	69.259	Loxodonta_africana
ENSRNOG00000013216	Usb1	100	83.146	ENSMFAG00000003926	USB1	100	83.895	Macaca_fascicularis
ENSRNOG00000013216	Usb1	100	83.146	ENSMMUG00000022669	USB1	100	83.895	Macaca_mulatta
ENSRNOG00000013216	Usb1	100	82.772	ENSMNEG00000042487	USB1	100	83.521	Macaca_nemestrina
ENSRNOG00000013216	Usb1	100	83.146	ENSMLEG00000028756	USB1	100	83.895	Mandrillus_leucophaeus
ENSRNOG00000013216	Usb1	98	50.000	ENSMAMG00000015092	usb1	99	50.000	Mastacembelus_armatus
ENSRNOG00000013216	Usb1	84	54.911	ENSMZEG00005010008	usb1	99	49.104	Maylandia_zebra
ENSRNOG00000013216	Usb1	100	88.764	ENSMAUG00000007832	Usb1	100	88.764	Mesocricetus_auratus
ENSRNOG00000013216	Usb1	100	82.397	ENSMICG00000004900	USB1	100	83.146	Microcebus_murinus
ENSRNOG00000013216	Usb1	100	89.139	ENSMOCG00000022647	Usb1	100	89.139	Microtus_ochrogaster
ENSRNOG00000013216	Usb1	85	51.754	ENSMMOG00000000490	usb1	99	50.000	Mola_mola
ENSRNOG00000013216	Usb1	100	66.052	ENSMODG00000014067	USB1	100	67.897	Monodelphis_domestica
ENSRNOG00000013216	Usb1	85	51.982	ENSMALG00000005930	usb1	99	47.331	Monopterus_albus
ENSRNOG00000013216	Usb1	100	91.386	MGP_CAROLIEiJ_G0031421	Usb1	100	91.386	Mus_caroli
ENSRNOG00000013216	Usb1	100	91.760	ENSMUSG00000031792	Usb1	100	92.920	Mus_musculus
ENSRNOG00000013216	Usb1	100	92.135	MGP_PahariEiJ_G0023019	Usb1	100	93.162	Mus_pahari
ENSRNOG00000013216	Usb1	100	91.386	MGP_SPRETEiJ_G0032540	Usb1	100	91.386	Mus_spretus
ENSRNOG00000013216	Usb1	100	78.439	ENSMPUG00000004684	USB1	96	78.810	Mustela_putorius_furo
ENSRNOG00000013216	Usb1	87	85.281	ENSMLUG00000007400	USB1	100	85.281	Myotis_lucifugus
ENSRNOG00000013216	Usb1	100	87.361	ENSNGAG00000009703	Usb1	100	87.361	Nannospalax_galili
ENSRNOG00000013216	Usb1	87	48.918	ENSNBRG00000008747	usb1	99	54.206	Neolamprologus_brichardi
ENSRNOG00000013216	Usb1	94	82.540	ENSNLEG00000003340	USB1	100	82.540	Nomascus_leucogenys
ENSRNOG00000013216	Usb1	57	58.824	ENSMEUG00000003328	-	100	60.131	Notamacropus_eugenii
ENSRNOG00000013216	Usb1	63	97.059	ENSOPRG00000011803	USB1	72	97.059	Ochotona_princeps
ENSRNOG00000013216	Usb1	100	80.899	ENSODEG00000016214	USB1	100	80.899	Octodon_degus
ENSRNOG00000013216	Usb1	98	50.179	ENSONIG00000011063	usb1	99	50.179	Oreochromis_niloticus
ENSRNOG00000013216	Usb1	84	70.667	ENSOANG00000012118	USB1	94	70.667	Ornithorhynchus_anatinus
ENSRNOG00000013216	Usb1	84	51.786	ENSORLG00000012479	usb1	99	48.529	Oryzias_latipes
ENSRNOG00000013216	Usb1	84	51.786	ENSORLG00020018671	usb1	99	47.794	Oryzias_latipes_hni
ENSRNOG00000013216	Usb1	92	48.047	ENSORLG00015009679	usb1	99	48.162	Oryzias_latipes_hsok
ENSRNOG00000013216	Usb1	84	51.786	ENSOMEG00000012930	usb1	99	48.364	Oryzias_melastigma
ENSRNOG00000013216	Usb1	100	74.906	ENSOGAG00000003273	USB1	100	76.404	Otolemur_garnettii
ENSRNOG00000013216	Usb1	92	78.862	ENSOARG00000001107	USB1	94	78.862	Ovis_aries
ENSRNOG00000013216	Usb1	100	83.521	ENSPPAG00000042137	USB1	100	83.521	Pan_paniscus
ENSRNOG00000013216	Usb1	100	82.022	ENSPPRG00000024797	USB1	100	82.022	Panthera_pardus
ENSRNOG00000013216	Usb1	100	82.022	ENSPTIG00000007506	USB1	100	82.022	Panthera_tigris_altaica
ENSRNOG00000013216	Usb1	100	76.030	ENSPTRG00000008172	USB1	100	85.514	Pan_troglodytes
ENSRNOG00000013216	Usb1	100	83.146	ENSPANG00000025138	USB1	100	83.895	Papio_anubis
ENSRNOG00000013216	Usb1	96	48.649	ENSPKIG00000015109	usb1	84	48.649	Paramormyrops_kingsleyae
ENSRNOG00000013216	Usb1	84	47.679	ENSPSIG00000004305	USB1	100	47.679	Pelodiscus_sinensis
ENSRNOG00000013216	Usb1	84	52.889	ENSPMGG00000017725	usb1	98	49.425	Periophthalmus_magnuspinnatus
ENSRNOG00000013216	Usb1	100	90.074	ENSPEMG00000016183	Usb1	100	90.074	Peromyscus_maniculatus_bairdii
ENSRNOG00000013216	Usb1	91	47.967	ENSPMAG00000000462	usb1	99	47.967	Petromyzon_marinus
ENSRNOG00000013216	Usb1	98	48.561	ENSPFOG00000011130	usb1	99	48.561	Poecilia_formosa
ENSRNOG00000013216	Usb1	98	48.561	ENSPLAG00000009820	usb1	99	48.561	Poecilia_latipinna
ENSRNOG00000013216	Usb1	98	49.275	ENSPMEG00000006402	usb1	99	49.275	Poecilia_mexicana
ENSRNOG00000013216	Usb1	85	49.587	ENSPREG00000001047	usb1	98	50.413	Poecilia_reticulata
ENSRNOG00000013216	Usb1	95	79.134	ENSPPYG00000007401	USB1	100	79.134	Pongo_abelii
ENSRNOG00000013216	Usb1	100	83.146	ENSPCOG00000022612	USB1	100	83.895	Propithecus_coquereli
ENSRNOG00000013216	Usb1	100	78.277	ENSPVAG00000004613	USB1	100	78.277	Pteropus_vampyrus
ENSRNOG00000013216	Usb1	85	55.066	ENSPNYG00000022262	usb1	99	49.104	Pundamilia_nyererei
ENSRNOG00000013216	Usb1	84	51.786	ENSPNAG00000011736	usb1	99	45.392	Pygocentrus_nattereri
ENSRNOG00000013216	Usb1	100	76.404	ENSRBIG00000044466	USB1	100	86.916	Rhinopithecus_bieti
ENSRNOG00000013216	Usb1	100	82.772	ENSRROG00000029211	USB1	100	83.521	Rhinopithecus_roxellana
ENSRNOG00000013216	Usb1	100	84.270	ENSSBOG00000029362	USB1	100	84.270	Saimiri_boliviensis_boliviensis
ENSRNOG00000013216	Usb1	82	71.689	ENSSHAG00000006993	USB1	100	66.667	Sarcophilus_harrisii
ENSRNOG00000013216	Usb1	93	53.012	ENSSFOG00015023663	usb1	78	53.012	Scleropages_formosus
ENSRNOG00000013216	Usb1	98	48.299	ENSSMAG00000015834	usb1	99	48.299	Scophthalmus_maximus
ENSRNOG00000013216	Usb1	85	54.425	ENSSDUG00000002949	usb1	99	49.638	Seriola_dumerili
ENSRNOG00000013216	Usb1	95	50.198	ENSSLDG00000014174	usb1	99	48.410	Seriola_lalandi_dorsalis
ENSRNOG00000013216	Usb1	80	65.888	ENSSPUG00000006741	USB1	100	65.888	Sphenodon_punctatus
ENSRNOG00000013216	Usb1	98	47.703	ENSSPAG00000007484	usb1	99	48.410	Stegastes_partitus
ENSRNOG00000013216	Usb1	100	81.784	ENSSSCG00000002807	USB1	100	81.784	Sus_scrofa
ENSRNOG00000013216	Usb1	79	67.453	ENSTGUG00000004792	USB1	99	61.509	Taeniopygia_guttata
ENSRNOG00000013216	Usb1	98	47.955	ENSTRUG00000021069	usb1	99	47.955	Takifugu_rubripes
ENSRNOG00000013216	Usb1	98	46.947	ENSTNIG00000000626	usb1	98	46.947	Tetraodon_nigroviridis
ENSRNOG00000013216	Usb1	87	62.500	ENSTBEG00000001507	USB1	100	62.500	Tupaia_belangeri
ENSRNOG00000013216	Usb1	100	81.041	ENSUAMG00000016823	USB1	100	81.413	Ursus_americanus
ENSRNOG00000013216	Usb1	80	84.579	ENSUMAG00000021369	USB1	100	84.579	Ursus_maritimus
ENSRNOG00000013216	Usb1	99	81.343	ENSVVUG00000023700	USB1	95	81.301	Vulpes_vulpes
ENSRNOG00000013216	Usb1	81	57.339	ENSXETG00000013795	usb1	99	52.672	Xenopus_tropicalis
ENSRNOG00000013216	Usb1	85	53.509	ENSXMAG00000024687	usb1	80	50.204	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000175	3'-5'-exoribonuclease activity	21873635.	IBA	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISO	Function
GO:0000175	3'-5'-exoribonuclease activity	-	ISS	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005634	nucleus	-	ISS	Component
GO:0008380	RNA splicing	-	ISO	Process
GO:0008380	RNA splicing	-	ISS	Process
GO:0034477	U6 snRNA 3'-end processing	21873635.	IBA	Process
GO:0034477	U6 snRNA 3'-end processing	-	ISO	Process
GO:0034477	U6 snRNA 3'-end processing	-	ISS	Process
GO:0045171	intercellular bridge	-	IEA	Component
GO:0045171	intercellular bridge	-	ISO	Component
GO:0090503	RNA phosphodiester bond hydrolysis, exonucleolytic	-	IEA	Process
GO:1990838	poly(U)-specific exoribonuclease activity, producing 3' uridine cyclic phosphate ends	-	IEA	Function