EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013287 (Gene tree)
Gene ID: 305854
Gene Symbol: Sall2
Alias: LOC305854
Full Name: spalt-like transcription factor 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 17903 bases
Position: chr15:28728140-28746042
Accession: 1309272
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073873	zf-C2H2	PF00096.26	4.6e-19	1	4
ENSRNOP00000073873	zf-C2H2	PF00096.26	4.6e-19	2	4
ENSRNOP00000073873	zf-C2H2	PF00096.26	4.6e-19	3	4
ENSRNOP00000073873	zf-C2H2	PF00096.26	4.6e-19	4	4
ENSRNOP00000017730	zf-C2H2	PF00096.26	4.6e-19	1	4
ENSRNOP00000017730	zf-C2H2	PF00096.26	4.6e-19	2	4
ENSRNOP00000017730	zf-C2H2	PF00096.26	4.6e-19	3	4
ENSRNOP00000017730	zf-C2H2	PF00096.26	4.6e-19	4	4
ENSRNOP00000073873	zf-met	PF12874.7	6.3e-12	1	2
ENSRNOP00000073873	zf-met	PF12874.7	6.3e-12	2	2
ENSRNOP00000017730	zf-met	PF12874.7	6.3e-12	1	2
ENSRNOP00000017730	zf-met	PF12874.7	6.3e-12	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000017730	-	5186	-	ENSRNOP00000017730	1004 (aa)	-	D4ADE6
ENSRNOT00000078180	-	4998	XM_006251884	ENSRNOP00000073873	1002 (aa)	XP_006251946	A0A0G2K6M7

Gene Model

Click here to download ENSRNOG00000013287's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013287's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013287	Sall2	100	88.282	ENSG00000165821	SALL2	100	89.076	Homo_sapiens
ENSRNOG00000013287	Sall2	100	87.327	ENSAMEG00000006226	SALL2	96	87.426	Ailuropoda_melanoleuca
ENSRNOG00000013287	Sall2	96	85.212	ENSANAG00000031405	SALL2	92	85.626	Aotus_nancymaae
ENSRNOG00000013287	Sall2	100	86.839	ENSBTAG00000013249	SALL2	100	86.939	Bos_taurus
ENSRNOG00000013287	Sall2	100	88.206	ENSCJAG00000008855	SALL2	100	88.999	Callithrix_jacchus
ENSRNOG00000013287	Sall2	74	80.774	ENSCAFG00000005676	SALL2	93	75.607	Canis_familiaris
ENSRNOG00000013287	Sall2	80	80.395	ENSCAFG00020015273	SALL2	100	76.308	Canis_lupus_dingo
ENSRNOG00000013287	Sall2	100	86.766	ENSCHIG00000025803	SALL2	100	86.866	Capra_hircus
ENSRNOG00000013287	Sall2	98	90.652	ENSTSYG00000030220	SALL2	89	94.937	Carlito_syrichta
ENSRNOG00000013287	Sall2	100	85.248	ENSCPOG00000040220	SALL2	100	85.644	Cavia_porcellus
ENSRNOG00000013287	Sall2	100	87.611	ENSCCAG00000033278	SALL2	100	88.503	Cebus_capucinus
ENSRNOG00000013287	Sall2	100	88.603	ENSCATG00000045263	SALL2	100	89.395	Cercocebus_atys
ENSRNOG00000013287	Sall2	100	85.119	ENSCLAG00000001400	SALL2	100	86.310	Chinchilla_lanigera
ENSRNOG00000013287	Sall2	80	86.556	ENSCSAG00000016461	SALL2	91	87.764	Chlorocebus_sabaeus
ENSRNOG00000013287	Sall2	79	55.945	ENSCPBG00000012695	SALL2	81	56.289	Chrysemys_picta_bellii
ENSRNOG00000013287	Sall2	100	88.206	ENSCANG00000036872	SALL2	100	88.999	Colobus_angolensis_palliatus
ENSRNOG00000013287	Sall2	100	93.035	ENSCGRG00001000154	Sall2	100	93.532	Cricetulus_griseus_chok1gshd
ENSRNOG00000013287	Sall2	100	92.935	ENSCGRG00000008130	Sall2	100	93.433	Cricetulus_griseus_crigri
ENSRNOG00000013287	Sall2	100	86.952	ENSDNOG00000032317	SALL2	100	87.052	Dasypus_novemcinctus
ENSRNOG00000013287	Sall2	100	86.037	ENSDORG00000030154	Sall2	100	86.136	Dipodomys_ordii
ENSRNOG00000013287	Sall2	100	88.107	ENSEASG00005011556	SALL2	100	88.503	Equus_asinus_asinus
ENSRNOG00000013287	Sall2	94	88.596	ENSECAG00000024449	SALL2	100	88.596	Equus_caballus
ENSRNOG00000013287	Sall2	100	87.636	ENSFCAG00000044786	SALL2	100	86.845	Felis_catus
ENSRNOG00000013287	Sall2	100	87.723	ENSFDAG00000014250	SALL2	100	87.822	Fukomys_damarensis
ENSRNOG00000013287	Sall2	100	88.668	ENSGGOG00000009133	SALL2	100	89.463	Gorilla_gorilla
ENSRNOG00000013287	Sall2	100	87.972	ENSHGLG00000006009	SALL2	100	88.072	Heterocephalus_glaber_female
ENSRNOG00000013287	Sall2	98	89.100	ENSHGLG00100000859	SALL2	99	86.860	Heterocephalus_glaber_male
ENSRNOG00000013287	Sall2	100	88.867	ENSSTOG00000023637	SALL2	100	88.966	Ictidomys_tridecemlineatus
ENSRNOG00000013287	Sall2	100	85.799	ENSJJAG00000000077	Sall2	100	85.601	Jaculus_jaculus
ENSRNOG00000013287	Sall2	100	87.215	ENSLAFG00000032150	SALL2	100	86.918	Loxodonta_africana
ENSRNOG00000013287	Sall2	100	88.503	ENSMFAG00000002687	SALL2	100	89.296	Macaca_fascicularis
ENSRNOG00000013287	Sall2	83	86.648	ENSMMUG00000014997	SALL2	91	88.160	Macaca_mulatta
ENSRNOG00000013287	Sall2	96	88.521	ENSMNEG00000030415	SALL2	93	89.349	Macaca_nemestrina
ENSRNOG00000013287	Sall2	100	88.603	ENSMLEG00000036462	SALL2	100	89.395	Mandrillus_leucophaeus
ENSRNOG00000013287	Sall2	100	92.270	ENSMAUG00000013964	Sall2	100	92.666	Mesocricetus_auratus
ENSRNOG00000013287	Sall2	100	89.264	ENSMICG00000046438	SALL2	100	89.761	Microcebus_murinus
ENSRNOG00000013287	Sall2	100	91.542	ENSMOCG00000003410	Sall2	100	91.940	Microtus_ochrogaster
ENSRNOG00000013287	Sall2	99	74.878	ENSMODG00000006068	SALL2	99	75.464	Monodelphis_domestica
ENSRNOG00000013287	Sall2	100	96.116	MGP_CAROLIEiJ_G0019241	Sall2	100	96.116	Mus_caroli
ENSRNOG00000013287	Sall2	100	96.315	ENSMUSG00000049532	Sall2	100	96.315	Mus_musculus
ENSRNOG00000013287	Sall2	100	95.120	MGP_PahariEiJ_G0030262	Sall2	100	95.817	Mus_pahari
ENSRNOG00000013287	Sall2	100	96.215	MGP_SPRETEiJ_G0020133	Sall2	100	96.215	Mus_spretus
ENSRNOG00000013287	Sall2	96	86.742	ENSMPUG00000000199	SALL2	88	87.050	Mustela_putorius_furo
ENSRNOG00000013287	Sall2	100	86.792	ENSMLUG00000009185	SALL2	99	87.090	Myotis_lucifugus
ENSRNOG00000013287	Sall2	100	89.672	ENSNGAG00000014258	Sall2	100	89.772	Nannospalax_galili
ENSRNOG00000013287	Sall2	100	88.095	ENSNLEG00000014602	SALL2	100	88.889	Nomascus_leucogenys
ENSRNOG00000013287	Sall2	95	76.211	ENSMEUG00000000526	SALL2	100	76.749	Notamacropus_eugenii
ENSRNOG00000013287	Sall2	100	86.395	ENSODEG00000001454	SALL2	100	86.991	Octodon_degus
ENSRNOG00000013287	Sall2	100	85.868	ENSOCUG00000027464	SALL2	100	86.510	Oryctolagus_cuniculus
ENSRNOG00000013287	Sall2	100	89.782	ENSOGAG00000031464	SALL2	100	89.782	Otolemur_garnettii
ENSRNOG00000013287	Sall2	100	86.667	ENSOARG00000019612	SALL2	100	86.368	Ovis_aries
ENSRNOG00000013287	Sall2	100	88.580	ENSPPAG00000038242	SALL2	100	89.374	Pan_paniscus
ENSRNOG00000013287	Sall2	100	88.206	ENSPPRG00000005572	SALL2	100	87.413	Panthera_pardus
ENSRNOG00000013287	Sall2	100	85.516	ENSPTIG00000018399	SALL2	100	84.722	Panthera_tigris_altaica
ENSRNOG00000013287	Sall2	100	88.580	ENSPTRG00000006128	SALL2	100	89.374	Pan_troglodytes
ENSRNOG00000013287	Sall2	100	88.603	ENSPANG00000020006	SALL2	100	89.296	Papio_anubis
ENSRNOG00000013287	Sall2	100	92.772	ENSPEMG00000022293	Sall2	100	93.762	Peromyscus_maniculatus_bairdii
ENSRNOG00000013287	Sall2	96	87.967	ENSPPYG00000005600	SALL2	93	88.797	Pongo_abelii
ENSRNOG00000013287	Sall2	89	85.523	ENSPCAG00000006689	SALL2	89	85.189	Procavia_capensis
ENSRNOG00000013287	Sall2	100	89.364	ENSPCOG00000017266	SALL2	100	89.662	Propithecus_coquereli
ENSRNOG00000013287	Sall2	100	83.631	ENSPVAG00000000277	SALL2	100	83.631	Pteropus_vampyrus
ENSRNOG00000013287	Sall2	86	87.947	ENSRBIG00000009332	SALL2	100	95.833	Rhinopithecus_bieti
ENSRNOG00000013287	Sall2	100	80.476	ENSRROG00000035352	SALL2	100	82.079	Rhinopithecus_roxellana
ENSRNOG00000013287	Sall2	100	87.711	ENSSBOG00000028539	SALL2	100	88.702	Saimiri_boliviensis_boliviensis
ENSRNOG00000013287	Sall2	99	73.359	ENSSHAG00000009219	SALL2	99	73.457	Sarcophilus_harrisii
ENSRNOG00000013287	Sall2	55	69.946	ENSSPUG00000010045	SALL2	71	56.149	Sphenodon_punctatus
ENSRNOG00000013287	Sall2	96	83.402	ENSSSCG00000022705	SALL2	89	83.921	Sus_scrofa
ENSRNOG00000013287	Sall2	100	86.567	ENSTTRG00000012842	SALL2	100	86.169	Tursiops_truncatus
ENSRNOG00000013287	Sall2	90	86.549	ENSUAMG00000028082	SALL2	87	86.770	Ursus_americanus
ENSRNOG00000013287	Sall2	100	84.044	ENSUMAG00000004963	SALL2	100	84.044	Ursus_maritimus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	IEA	Function
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	IEA	Function
GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	-	ISO	Function
GO:0001654	eye development	-	IEA	Process
GO:0001654	eye development	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003676	nucleic acid binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0008150	biological_process	-	ND	Process
GO:0021915	neural tube development	-	IEA	Process
GO:0021915	neural tube development	-	ISO	Process
GO:0044877	protein-containing complex binding	-	IEA	Function
GO:0044877	protein-containing complex binding	-	ISO	Function
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process