EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013328 (Gene tree)
Gene ID: 498642
Gene Symbol: Rbpms
Alias: LOC498642|RGD1561067
Full Name: RNA binding protein%2C mRNA processing factor
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 141908 bases
Position: chr16:61954590-62096497
Accession: 1561067
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000017883	RRM_1	PF00076.22	1.3e-11	1	1
ENSRNOP00000063629	RRM_1	PF00076.22	1.3e-11	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000068011	-	727	-	ENSRNOP00000063629	207 (aa)	-	F2Z3S5
ENSRNOT00000017883	-	1060	XM_006253240	ENSRNOP00000017883	220 (aa)	XP_006253302	F1M9Y9

Gene Model

Click here to download ENSRNOG00000013328's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013328's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000013328	Rbpms	73	76.316	ENSRNOG00000015896	Rbpms2	80	70.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013328	Rbpms	100	99.091	ENSG00000157110	RBPMS	100	100.000	Homo_sapiens
ENSRNOG00000013328	Rbpms	88	82.967	ENSAPOG00000022304	RBPMS	92	78.571	Acanthochromis_polyacanthus
ENSRNOG00000013328	Rbpms	93	97.561	ENSAMEG00000001522	RBPMS	93	97.561	Ailuropoda_melanoleuca
ENSRNOG00000013328	Rbpms	62	79.259	ENSACIG00000011395	RBPMS	75	77.857	Amphilophus_citrinellus
ENSRNOG00000013328	Rbpms	88	82.967	ENSAOCG00000007731	RBPMS	92	78.571	Amphiprion_ocellaris
ENSRNOG00000013328	Rbpms	88	82.967	ENSAPEG00000023543	RBPMS	92	78.571	Amphiprion_percula
ENSRNOG00000013328	Rbpms	88	82.967	ENSATEG00000018184	RBPMS	92	78.571	Anabas_testudineus
ENSRNOG00000013328	Rbpms	91	87.831	ENSACAG00000003012	RBPMS	95	83.069	Anolis_carolinensis
ENSRNOG00000013328	Rbpms	100	99.091	ENSANAG00000028150	RBPMS	100	99.091	Aotus_nancymaae
ENSRNOG00000013328	Rbpms	88	83.516	ENSACLG00000002926	RBPMS	92	79.121	Astatotilapia_calliptera
ENSRNOG00000013328	Rbpms	86	81.006	ENSAMXG00000033491	rbpms	93	76.536	Astyanax_mexicanus
ENSRNOG00000013328	Rbpms	100	97.727	ENSBTAG00000033727	RBPMS	100	97.727	Bos_taurus
ENSRNOG00000013328	Rbpms	100	98.636	ENSCJAG00000012366	RBPMS	100	98.636	Callithrix_jacchus
ENSRNOG00000013328	Rbpms	100	99.091	ENSCAFG00000006503	RBPMS	100	99.091	Canis_familiaris
ENSRNOG00000013328	Rbpms	100	99.091	ENSCAFG00020001031	RBPMS	100	99.091	Canis_lupus_dingo
ENSRNOG00000013328	Rbpms	88	87.978	ENSCHIG00000027156	RBPMS	92	84.699	Capra_hircus
ENSRNOG00000013328	Rbpms	53	100.000	ENSTSYG00000013982	RBPMS	83	100.000	Carlito_syrichta
ENSRNOG00000013328	Rbpms	100	98.182	ENSCPOG00000038597	RBPMS	100	98.182	Cavia_porcellus
ENSRNOG00000013328	Rbpms	86	98.876	ENSCCAG00000033226	RBPMS	92	96.703	Cebus_capucinus
ENSRNOG00000013328	Rbpms	100	99.091	ENSCATG00000036486	RBPMS	100	99.091	Cercocebus_atys
ENSRNOG00000013328	Rbpms	90	99.495	ENSCLAG00000001518	RBPMS	100	99.495	Chinchilla_lanigera
ENSRNOG00000013328	Rbpms	100	99.091	ENSCSAG00000015838	RBPMS	100	99.091	Chlorocebus_sabaeus
ENSRNOG00000013328	Rbpms	90	98.990	ENSCHOG00000008745	RBPMS	100	98.990	Choloepus_hoffmanni
ENSRNOG00000013328	Rbpms	85	90.909	ENSCPBG00000013437	RBPMS	92	84.444	Chrysemys_picta_bellii
ENSRNOG00000013328	Rbpms	90	99.495	ENSCANG00000034997	RBPMS	100	99.495	Colobus_angolensis_palliatus
ENSRNOG00000013328	Rbpms	100	100.000	ENSCGRG00001002814	Rbpms	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000013328	Rbpms	90	100.000	ENSCGRG00000006095	Rbpms	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000013328	Rbpms	86	83.616	ENSCSEG00000002777	rbpms	91	79.762	Cynoglossus_semilaevis
ENSRNOG00000013328	Rbpms	88	82.967	ENSCVAG00000013975	RBPMS	92	78.571	Cyprinodon_variegatus
ENSRNOG00000013328	Rbpms	75	66.667	ENSDARG00000099396	rbpms	91	64.103	Danio_rerio
ENSRNOG00000013328	Rbpms	100	95.909	ENSDNOG00000008126	RBPMS	100	91.818	Dasypus_novemcinctus
ENSRNOG00000013328	Rbpms	100	98.636	ENSETEG00000017582	RBPMS	100	98.636	Echinops_telfairi
ENSRNOG00000013328	Rbpms	90	99.495	ENSEASG00005016962	RBPMS	99	99.495	Equus_asinus_asinus
ENSRNOG00000013328	Rbpms	100	98.636	ENSECAG00000020735	RBPMS	100	98.636	Equus_caballus
ENSRNOG00000013328	Rbpms	88	80.220	ENSELUG00000009787	rbpms	92	76.923	Esox_lucius
ENSRNOG00000013328	Rbpms	88	50.820	ENSFCAG00000022292	-	85	58.333	Felis_catus
ENSRNOG00000013328	Rbpms	100	98.636	ENSFCAG00000025639	-	100	98.636	Felis_catus
ENSRNOG00000013328	Rbpms	90	98.990	ENSFDAG00000012078	RBPMS	100	98.990	Fukomys_damarensis
ENSRNOG00000013328	Rbpms	88	82.967	ENSFHEG00000000618	rbpms	92	78.571	Fundulus_heteroclitus
ENSRNOG00000013328	Rbpms	73	56.291	ENSGMOG00000009646	-	100	56.291	Gadus_morhua
ENSRNOG00000013328	Rbpms	88	82.967	ENSGAFG00000016566	RBPMS	92	78.571	Gambusia_affinis
ENSRNOG00000013328	Rbpms	88	73.077	ENSGACG00000019471	rbpms	92	72.527	Gasterosteus_aculeatus
ENSRNOG00000013328	Rbpms	61	88.095	ENSGAGG00000023634	RBPMS	56	85.821	Gopherus_agassizii
ENSRNOG00000013328	Rbpms	95	77.612	ENSHBUG00000005888	RBPMS	92	79.121	Haplochromis_burtoni
ENSRNOG00000013328	Rbpms	100	99.091	ENSHGLG00000002303	RBPMS	100	99.091	Heterocephalus_glaber_female
ENSRNOG00000013328	Rbpms	90	99.495	ENSHGLG00100008787	RBPMS	100	99.495	Heterocephalus_glaber_male
ENSRNOG00000013328	Rbpms	86	84.270	ENSHCOG00000005774	rbpms	91	80.226	Hippocampus_comes
ENSRNOG00000013328	Rbpms	85	78.531	ENSIPUG00000012459	RBPMS	92	75.706	Ictalurus_punctatus
ENSRNOG00000013328	Rbpms	100	98.636	ENSSTOG00000026546	RBPMS	100	98.636	Ictidomys_tridecemlineatus
ENSRNOG00000013328	Rbpms	100	98.636	ENSJJAG00000014024	Rbpms	100	98.636	Jaculus_jaculus
ENSRNOG00000013328	Rbpms	55	87.611	ENSKMAG00000006377	RBPMS	66	82.400	Kryptolebias_marmoratus
ENSRNOG00000013328	Rbpms	88	82.967	ENSLBEG00000027989	RBPMS	89	81.875	Labrus_bergylta
ENSRNOG00000013328	Rbpms	78	87.578	ENSLOCG00000013199	RBPMS	88	82.609	Lepisosteus_oculatus
ENSRNOG00000013328	Rbpms	100	98.636	ENSLAFG00000000209	RBPMS	100	98.636	Loxodonta_africana
ENSRNOG00000013328	Rbpms	100	99.091	ENSMFAG00000036911	RBPMS	100	99.091	Macaca_fascicularis
ENSRNOG00000013328	Rbpms	100	99.091	ENSMMUG00000000458	RBPMS	100	99.091	Macaca_mulatta
ENSRNOG00000013328	Rbpms	100	99.091	ENSMNEG00000043805	RBPMS	100	99.091	Macaca_nemestrina
ENSRNOG00000013328	Rbpms	90	99.495	ENSMLEG00000015635	RBPMS	100	99.495	Mandrillus_leucophaeus
ENSRNOG00000013328	Rbpms	64	84.091	ENSMAMG00000004604	RBPMS	71	81.752	Mastacembelus_armatus
ENSRNOG00000013328	Rbpms	88	83.516	ENSMZEG00005000698	RBPMS	92	79.121	Maylandia_zebra
ENSRNOG00000013328	Rbpms	78	93.789	ENSMGAG00000005088	RBPMS	90	82.486	Meleagris_gallopavo
ENSRNOG00000013328	Rbpms	100	100.000	ENSMAUG00000018892	Rbpms	100	100.000	Mesocricetus_auratus
ENSRNOG00000013328	Rbpms	100	96.818	ENSMICG00000001295	RBPMS	100	96.818	Microcebus_murinus
ENSRNOG00000013328	Rbpms	100	100.000	ENSMOCG00000014009	Rbpms	100	100.000	Microtus_ochrogaster
ENSRNOG00000013328	Rbpms	78	86.335	ENSMMOG00000012036	RBPMS	67	81.366	Mola_mola
ENSRNOG00000013328	Rbpms	85	90.857	ENSMODG00000019006	RBPMS	87	82.703	Monodelphis_domestica
ENSRNOG00000013328	Rbpms	87	81.667	ENSMALG00000003261	RBPMS	92	77.222	Monopterus_albus
ENSRNOG00000013328	Rbpms	100	100.000	MGP_CAROLIEiJ_G0030970	Rbpms	100	100.000	Mus_caroli
ENSRNOG00000013328	Rbpms	100	100.000	ENSMUSG00000031586	Rbpms	100	100.000	Mus_musculus
ENSRNOG00000013328	Rbpms	100	99.545	MGP_PahariEiJ_G0021439	Rbpms	100	99.545	Mus_pahari
ENSRNOG00000013328	Rbpms	100	100.000	MGP_SPRETEiJ_G0032087	Rbpms	100	100.000	Mus_spretus
ENSRNOG00000013328	Rbpms	93	97.561	ENSMPUG00000011314	RBPMS	93	97.561	Mustela_putorius_furo
ENSRNOG00000013328	Rbpms	88	95.604	ENSMLUG00000009391	RBPMS	100	98.101	Myotis_lucifugus
ENSRNOG00000013328	Rbpms	100	99.091	ENSNGAG00000011141	Rbpms	100	99.091	Nannospalax_galili
ENSRNOG00000013328	Rbpms	78	86.335	ENSNBRG00000003313	RBPMS	89	81.366	Neolamprologus_brichardi
ENSRNOG00000013328	Rbpms	100	98.636	ENSNLEG00000036183	-	100	98.636	Nomascus_leucogenys
ENSRNOG00000013328	Rbpms	100	78.636	ENSOPRG00000013151	RBPMS	100	78.636	Ochotona_princeps
ENSRNOG00000013328	Rbpms	100	99.091	ENSODEG00000006700	RBPMS	100	99.091	Octodon_degus
ENSRNOG00000013328	Rbpms	78	86.335	ENSONIG00000007546	RBPMS	91	81.366	Oreochromis_niloticus
ENSRNOG00000013328	Rbpms	100	98.636	ENSOCUG00000008572	RBPMS	100	98.636	Oryctolagus_cuniculus
ENSRNOG00000013328	Rbpms	88	81.868	ENSORLG00000004135	-	92	77.473	Oryzias_latipes
ENSRNOG00000013328	Rbpms	88	82.418	ENSORLG00020016179	RBPMS	92	78.022	Oryzias_latipes_hni
ENSRNOG00000013328	Rbpms	88	82.418	ENSORLG00015013770	RBPMS	92	78.022	Oryzias_latipes_hsok
ENSRNOG00000013328	Rbpms	88	82.418	ENSOMEG00000005044	RBPMS	92	78.022	Oryzias_melastigma
ENSRNOG00000013328	Rbpms	88	97.253	ENSOGAG00000030298	RBPMS	81	97.253	Otolemur_garnettii
ENSRNOG00000013328	Rbpms	64	88.722	ENSOARG00000010366	RBPMS	94	88.722	Ovis_aries
ENSRNOG00000013328	Rbpms	90	99.495	ENSPPAG00000033108	RBPMS	100	99.495	Pan_paniscus
ENSRNOG00000013328	Rbpms	100	98.636	ENSPPRG00000004836	RBPMS	100	98.636	Panthera_pardus
ENSRNOG00000013328	Rbpms	90	99.495	ENSPTIG00000015964	RBPMS	90	99.495	Panthera_tigris_altaica
ENSRNOG00000013328	Rbpms	100	99.091	ENSPTRG00000020135	RBPMS	100	99.091	Pan_troglodytes
ENSRNOG00000013328	Rbpms	100	99.091	ENSPANG00000008143	RBPMS	100	99.091	Papio_anubis
ENSRNOG00000013328	Rbpms	85	81.143	ENSPKIG00000004836	rbpms	92	77.714	Paramormyrops_kingsleyae
ENSRNOG00000013328	Rbpms	85	82.286	ENSPKIG00000000535	-	89	78.286	Paramormyrops_kingsleyae
ENSRNOG00000013328	Rbpms	77	93.125	ENSPSIG00000006136	RBPMS	88	94.872	Pelodiscus_sinensis
ENSRNOG00000013328	Rbpms	77	88.050	ENSPMGG00000018012	RBPMS	91	70.936	Periophthalmus_magnuspinnatus
ENSRNOG00000013328	Rbpms	100	98.190	ENSPEMG00000021130	Rbpms	100	98.190	Peromyscus_maniculatus_bairdii
ENSRNOG00000013328	Rbpms	77	95.597	ENSPCIG00000019298	-	81	79.500	Phascolarctos_cinereus
ENSRNOG00000013328	Rbpms	88	82.967	ENSPFOG00000017158	RBPMS	92	78.571	Poecilia_formosa
ENSRNOG00000013328	Rbpms	88	82.967	ENSPLAG00000010767	RBPMS	92	78.571	Poecilia_latipinna
ENSRNOG00000013328	Rbpms	88	82.967	ENSPMEG00000009788	RBPMS	92	78.571	Poecilia_mexicana
ENSRNOG00000013328	Rbpms	88	82.967	ENSPREG00000016959	RBPMS	92	78.571	Poecilia_reticulata
ENSRNOG00000013328	Rbpms	100	99.091	ENSPPYG00000018487	RBPMS	100	99.091	Pongo_abelii
ENSRNOG00000013328	Rbpms	53	98.182	ENSPCAG00000013493	-	100	98.182	Procavia_capensis
ENSRNOG00000013328	Rbpms	100	86.364	ENSPCOG00000015948	RBPMS	100	86.364	Propithecus_coquereli
ENSRNOG00000013328	Rbpms	99	97.260	ENSPVAG00000001661	RBPMS	99	97.260	Pteropus_vampyrus
ENSRNOG00000013328	Rbpms	88	83.516	ENSPNYG00000001172	RBPMS	92	79.121	Pundamilia_nyererei
ENSRNOG00000013328	Rbpms	86	82.123	ENSPNAG00000029160	RBPMS	93	77.654	Pygocentrus_nattereri
ENSRNOG00000013328	Rbpms	98	92.593	ENSRBIG00000038218	RBPMS	91	96.875	Rhinopithecus_bieti
ENSRNOG00000013328	Rbpms	100	99.091	ENSRROG00000042518	RBPMS	100	99.091	Rhinopithecus_roxellana
ENSRNOG00000013328	Rbpms	100	98.636	ENSSBOG00000026670	RBPMS	100	98.636	Saimiri_boliviensis_boliviensis
ENSRNOG00000013328	Rbpms	86	87.709	ENSSHAG00000010114	RBPMS	91	82.682	Sarcophilus_harrisii
ENSRNOG00000013328	Rbpms	78	81.366	ENSSFOG00015017481	-	92	74.857	Scleropages_formosus
ENSRNOG00000013328	Rbpms	88	80.769	ENSSFOG00015000417	rbpms	92	76.923	Scleropages_formosus
ENSRNOG00000013328	Rbpms	88	82.967	ENSSMAG00000010871	rbpms	92	78.571	Scophthalmus_maximus
ENSRNOG00000013328	Rbpms	88	82.967	ENSSDUG00000010894	RBPMS	92	78.571	Seriola_dumerili
ENSRNOG00000013328	Rbpms	88	82.967	ENSSLDG00000012916	RBPMS	92	78.571	Seriola_lalandi_dorsalis
ENSRNOG00000013328	Rbpms	100	95.000	ENSSARG00000000274	RBPMS	100	90.909	Sorex_araneus
ENSRNOG00000013328	Rbpms	86	88.333	ENSSPUG00000017525	RBPMS	69	83.333	Sphenodon_punctatus
ENSRNOG00000013328	Rbpms	62	85.156	ENSSPAG00000004777	rbpms	80	83.969	Stegastes_partitus
ENSRNOG00000013328	Rbpms	100	98.636	ENSSSCG00000015846	RBPMS	100	98.636	Sus_scrofa
ENSRNOG00000013328	Rbpms	85	90.341	ENSTGUG00000001776	RBPMS	94	83.889	Taeniopygia_guttata
ENSRNOG00000013328	Rbpms	88	82.418	ENSTRUG00000000041	RBPMS	92	78.022	Takifugu_rubripes
ENSRNOG00000013328	Rbpms	100	96.818	ENSTTRG00000012451	RBPMS	100	96.818	Tursiops_truncatus
ENSRNOG00000013328	Rbpms	56	95.690	ENSUAMG00000026353	RBPMS	76	95.690	Ursus_americanus
ENSRNOG00000013328	Rbpms	90	98.995	ENSUMAG00000007347	RBPMS	96	98.995	Ursus_maritimus
ENSRNOG00000013328	Rbpms	90	99.495	ENSVPAG00000010991	RBPMS	100	99.495	Vicugna_pacos
ENSRNOG00000013328	Rbpms	100	99.091	ENSVVUG00000019770	RBPMS	100	99.091	Vulpes_vulpes
ENSRNOG00000013328	Rbpms	76	93.631	ENSXETG00000011290	rbpms	89	88.462	Xenopus_tropicalis
ENSRNOG00000013328	Rbpms	88	74.176	ENSXCOG00000002436	RBPMS	92	69.780	Xiphophorus_couchianus
ENSRNOG00000013328	Rbpms	88	82.967	ENSXMAG00000027637	RBPMS	92	78.571	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0003713	transcription coactivator activity	-	IEA	Function
GO:0003713	transcription coactivator activity	-	ISO	Function
GO:0003723	RNA binding	-	ISO	Function
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006979	response to oxidative stress	-	IEA	Process
GO:0006979	response to oxidative stress	-	ISO	Process
GO:0008143	poly(A) binding	-	IEA	Function
GO:0008143	poly(A) binding	-	ISO	Function
GO:0010494	cytoplasmic stress granule	-	IEA	Component
GO:0010494	cytoplasmic stress granule	-	ISO	Component
GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	-	IEA	Process
GO:0010862	positive regulation of pathway-restricted SMAD protein phosphorylation	-	ISO	Process
GO:0035614	snRNA stem-loop binding	21873635.	IBA	Function
GO:0042803	protein homodimerization activity	-	IEA	Function
GO:0042803	protein homodimerization activity	-	ISO	Function
GO:0060391	positive regulation of SMAD protein signal transduction	-	IEA	Process
GO:0060391	positive regulation of SMAD protein signal transduction	-	ISO	Process
GO:1903508	positive regulation of nucleic acid-templated transcription	-	IEA	Process