EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013429 (Gene tree)
Gene ID: 287120
Gene Symbol: Tbl3
Alias: LOC287120|MGC94510
Full Name: transducin (beta)-like 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 5283 bases
Position: chr10:14066948-14072230
Accession: 1305142
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000018405	Utp13	PF08625.11	2.3e-39	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000018405	-	2570	-	ENSRNOP00000018405	800 (aa)	-	Q5U2W5

Gene Model

Click here to download ENSRNOG00000013429's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013429's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000013429	Tbl3	66	31.452	ENSRNOG00000008212	Wdr5	90	31.452
ENSRNOG00000013429	Tbl3	67	32.000	ENSRNOG00000002253	Wdr5b	91	32.000
ENSRNOG00000013429	Tbl3	66	33.673	ENSRNOG00000014777	Prpf4	56	33.673
ENSRNOG00000013429	Tbl3	80	30.435	ENSRNOG00000019670	Wdr3	57	30.435

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013429	Tbl3	99	89.348	ENSG00000183751	TBL3	99	89.348	Homo_sapiens
ENSRNOG00000013429	Tbl3	98	62.782	ENSAPOG00000021308	tbl3	85	63.736	Acanthochromis_polyacanthus
ENSRNOG00000013429	Tbl3	98	86.641	ENSAMEG00000017654	TBL3	99	86.558	Ailuropoda_melanoleuca
ENSRNOG00000013429	Tbl3	98	62.469	ENSACIG00000007459	tbl3	99	62.469	Amphilophus_citrinellus
ENSRNOG00000013429	Tbl3	98	63.158	ENSAOCG00000000453	tbl3	86	63.283	Amphiprion_ocellaris
ENSRNOG00000013429	Tbl3	98	62.861	ENSAPEG00000010228	tbl3	99	62.986	Amphiprion_percula
ENSRNOG00000013429	Tbl3	98	62.875	ENSATEG00000024571	tbl3	96	61.619	Anabas_testudineus
ENSRNOG00000013429	Tbl3	91	62.125	ENSAPLG00000008515	TBL3	99	62.125	Anas_platyrhynchos
ENSRNOG00000013429	Tbl3	53	63.445	ENSACAG00000012119	-	84	63.445	Anolis_carolinensis
ENSRNOG00000013429	Tbl3	99	89.533	ENSANAG00000030472	TBL3	99	89.533	Aotus_nancymaae
ENSRNOG00000013429	Tbl3	98	62.516	ENSACLG00000027954	tbl3	99	59.186	Astatotilapia_calliptera
ENSRNOG00000013429	Tbl3	98	61.965	ENSAMXG00000042589	tbl3	86	62.155	Astyanax_mexicanus
ENSRNOG00000013429	Tbl3	100	87.500	ENSBTAG00000020366	TBL3	100	85.750	Bos_taurus
ENSRNOG00000013429	Tbl3	97	32.379	WBGene00013143	Y53C12B.1	99	32.379	Caenorhabditis_elegans
ENSRNOG00000013429	Tbl3	99	88.457	ENSCJAG00000015245	TBL3	99	88.457	Callithrix_jacchus
ENSRNOG00000013429	Tbl3	99	86.835	ENSCAFG00000019430	TBL3	96	89.259	Canis_familiaris
ENSRNOG00000013429	Tbl3	99	87.056	ENSCAFG00020026321	TBL3	98	87.056	Canis_lupus_dingo
ENSRNOG00000013429	Tbl3	100	88.250	ENSCHIG00000007747	TBL3	98	88.250	Capra_hircus
ENSRNOG00000013429	Tbl3	100	87.141	ENSTSYG00000036142	TBL3	99	87.141	Carlito_syrichta
ENSRNOG00000013429	Tbl3	98	83.736	ENSCAPG00000016762	TBL3	96	83.736	Cavia_aperea
ENSRNOG00000013429	Tbl3	100	89.625	ENSCPOG00000005998	TBL3	100	89.625	Cavia_porcellus
ENSRNOG00000013429	Tbl3	99	89.460	ENSCCAG00000034486	TBL3	99	89.460	Cebus_capucinus
ENSRNOG00000013429	Tbl3	99	88.708	ENSCATG00000031298	TBL3	99	88.708	Cercocebus_atys
ENSRNOG00000013429	Tbl3	100	90.500	ENSCLAG00000013342	TBL3	100	90.500	Chinchilla_lanigera
ENSRNOG00000013429	Tbl3	99	89.084	ENSCSAG00000011191	TBL3	99	89.084	Chlorocebus_sabaeus
ENSRNOG00000013429	Tbl3	99	66.171	ENSCPBG00000000253	TBL3	99	66.171	Chrysemys_picta_bellii
ENSRNOG00000013429	Tbl3	98	45.891	ENSCING00000009521	-	98	45.891	Ciona_intestinalis
ENSRNOG00000013429	Tbl3	99	88.708	ENSCANG00000031169	TBL3	99	88.708	Colobus_angolensis_palliatus
ENSRNOG00000013429	Tbl3	100	94.500	ENSCGRG00001021817	Tbl3	100	94.500	Cricetulus_griseus_chok1gshd
ENSRNOG00000013429	Tbl3	100	94.500	ENSCGRG00000013364	Tbl3	100	94.500	Cricetulus_griseus_crigri
ENSRNOG00000013429	Tbl3	98	61.739	ENSCSEG00000015634	tbl3	99	59.527	Cynoglossus_semilaevis
ENSRNOG00000013429	Tbl3	98	63.237	ENSCVAG00000002720	tbl3	99	62.384	Cyprinodon_variegatus
ENSRNOG00000013429	Tbl3	98	54.318	ENSDARG00000052344	tbl3	88	54.443	Danio_rerio
ENSRNOG00000013429	Tbl3	87	58.587	ENSDNOG00000019996	TBL3	98	64.404	Dasypus_novemcinctus
ENSRNOG00000013429	Tbl3	98	88.462	ENSDORG00000007377	Tbl3	98	87.879	Dipodomys_ordii
ENSRNOG00000013429	Tbl3	97	31.946	FBgn0033454	CG1671	99	31.946	Drosophila_melanogaster
ENSRNOG00000013429	Tbl3	87	90.000	ENSETEG00000019403	TBL3	87	90.000	Echinops_telfairi
ENSRNOG00000013429	Tbl3	98	56.671	ENSEBUG00000003526	tbl3	90	56.671	Eptatretus_burgeri
ENSRNOG00000013429	Tbl3	99	89.348	ENSEASG00005004649	TBL3	99	89.348	Equus_asinus_asinus
ENSRNOG00000013429	Tbl3	99	89.348	ENSECAG00000019299	TBL3	99	89.348	Equus_caballus
ENSRNOG00000013429	Tbl3	88	86.448	ENSEEUG00000000761	-	63	86.448	Erinaceus_europaeus
ENSRNOG00000013429	Tbl3	98	51.799	ENSELUG00000007394	tbl3	98	51.799	Esox_lucius
ENSRNOG00000013429	Tbl3	100	87.625	ENSFCAG00000011740	TBL3	100	87.625	Felis_catus
ENSRNOG00000013429	Tbl3	98	65.448	ENSFALG00000003409	TBL3	99	65.093	Ficedula_albicollis
ENSRNOG00000013429	Tbl3	100	90.000	ENSFDAG00000007751	TBL3	100	90.000	Fukomys_damarensis
ENSRNOG00000013429	Tbl3	98	61.827	ENSFHEG00000002234	tbl3	86	61.952	Fundulus_heteroclitus
ENSRNOG00000013429	Tbl3	98	50.297	ENSGMOG00000011562	tbl3	99	57.678	Gadus_morhua
ENSRNOG00000013429	Tbl3	99	65.714	ENSGALG00000005558	TBL3	99	65.714	Gallus_gallus
ENSRNOG00000013429	Tbl3	98	62.328	ENSGAFG00000020165	tbl3	87	62.328	Gambusia_affinis
ENSRNOG00000013429	Tbl3	99	61.159	ENSGACG00000011960	tbl3	99	61.615	Gasterosteus_aculeatus
ENSRNOG00000013429	Tbl3	98	65.578	ENSGAGG00000024028	TBL3	97	65.578	Gopherus_agassizii
ENSRNOG00000013429	Tbl3	99	89.223	ENSGGOG00000009378	TBL3	99	89.223	Gorilla_gorilla
ENSRNOG00000013429	Tbl3	98	62.391	ENSHBUG00000011872	tbl3	98	61.854	Haplochromis_burtoni
ENSRNOG00000013429	Tbl3	100	90.000	ENSHGLG00000002431	TBL3	100	90.000	Heterocephalus_glaber_female
ENSRNOG00000013429	Tbl3	100	88.625	ENSHGLG00100012878	TBL3	100	88.625	Heterocephalus_glaber_male
ENSRNOG00000013429	Tbl3	98	62.594	ENSHCOG00000016689	tbl3	87	62.718	Hippocampus_comes
ENSRNOG00000013429	Tbl3	98	60.075	ENSIPUG00000003568	TBL3	87	60.075	Ictalurus_punctatus
ENSRNOG00000013429	Tbl3	100	89.500	ENSSTOG00000012964	TBL3	100	89.500	Ictidomys_tridecemlineatus
ENSRNOG00000013429	Tbl3	100	89.375	ENSJJAG00000004124	Tbl3	100	89.375	Jaculus_jaculus
ENSRNOG00000013429	Tbl3	99	62.112	ENSKMAG00000020117	tbl3	99	61.408	Kryptolebias_marmoratus
ENSRNOG00000013429	Tbl3	98	61.338	ENSLBEG00000026742	tbl3	86	61.338	Labrus_bergylta
ENSRNOG00000013429	Tbl3	99	62.095	ENSLACG00000000615	TBL3	99	62.095	Latimeria_chalumnae
ENSRNOG00000013429	Tbl3	98	64.375	ENSLOCG00000008853	tbl3	86	64.375	Lepisosteus_oculatus
ENSRNOG00000013429	Tbl3	100	86.625	ENSLAFG00000004699	TBL3	100	86.625	Loxodonta_africana
ENSRNOG00000013429	Tbl3	99	89.210	ENSMFAG00000030302	TBL3	99	89.210	Macaca_fascicularis
ENSRNOG00000013429	Tbl3	99	89.084	ENSMMUG00000007943	TBL3	99	89.084	Macaca_mulatta
ENSRNOG00000013429	Tbl3	99	89.210	ENSMNEG00000032603	TBL3	99	89.210	Macaca_nemestrina
ENSRNOG00000013429	Tbl3	98	89.017	ENSMLEG00000043359	TBL3	99	89.017	Mandrillus_leucophaeus
ENSRNOG00000013429	Tbl3	98	61.538	ENSMAMG00000023507	tbl3	86	61.538	Mastacembelus_armatus
ENSRNOG00000013429	Tbl3	98	62.267	ENSMZEG00005000630	tbl3	93	61.622	Maylandia_zebra
ENSRNOG00000013429	Tbl3	99	64.932	ENSMGAG00000005694	TBL3	99	64.888	Meleagris_gallopavo
ENSRNOG00000013429	Tbl3	100	94.750	ENSMAUG00000008718	Tbl3	100	94.750	Mesocricetus_auratus
ENSRNOG00000013429	Tbl3	99	89.210	ENSMICG00000012787	TBL3	87	89.210	Microcebus_murinus
ENSRNOG00000013429	Tbl3	100	95.000	ENSMOCG00000019634	Tbl3	100	95.000	Microtus_ochrogaster
ENSRNOG00000013429	Tbl3	98	61.318	ENSMMOG00000007551	tbl3	99	61.104	Mola_mola
ENSRNOG00000013429	Tbl3	99	73.325	ENSMODG00000016091	TBL3	99	73.325	Monodelphis_domestica
ENSRNOG00000013429	Tbl3	98	62.017	ENSMALG00000007013	tbl3	86	62.017	Monopterus_albus
ENSRNOG00000013429	Tbl3	99	95.575	MGP_CAROLIEiJ_G0021199	Tbl3	100	95.506	Mus_caroli
ENSRNOG00000013429	Tbl3	99	95.575	ENSMUSG00000040688	Tbl3	100	95.381	Mus_musculus
ENSRNOG00000013429	Tbl3	99	96.081	MGP_PahariEiJ_G0023516	Tbl3	100	96.005	Mus_pahari
ENSRNOG00000013429	Tbl3	99	95.954	MGP_SPRETEiJ_G0022110	Tbl3	100	95.755	Mus_spretus
ENSRNOG00000013429	Tbl3	99	86.700	ENSMPUG00000015545	TBL3	99	86.700	Mustela_putorius_furo
ENSRNOG00000013429	Tbl3	100	87.375	ENSMLUG00000011684	TBL3	100	87.375	Myotis_lucifugus
ENSRNOG00000013429	Tbl3	100	91.625	ENSNGAG00000002428	Tbl3	100	91.625	Nannospalax_galili
ENSRNOG00000013429	Tbl3	99	59.902	ENSNBRG00000003173	tbl3	99	59.902	Neolamprologus_brichardi
ENSRNOG00000013429	Tbl3	99	89.335	ENSNLEG00000008889	TBL3	99	89.335	Nomascus_leucogenys
ENSRNOG00000013429	Tbl3	92	69.973	ENSMEUG00000004011	TBL3	99	69.973	Notamacropus_eugenii
ENSRNOG00000013429	Tbl3	99	79.674	ENSOPRG00000002527	-	100	79.674	Ochotona_princeps
ENSRNOG00000013429	Tbl3	100	88.375	ENSODEG00000013930	TBL3	100	88.375	Octodon_degus
ENSRNOG00000013429	Tbl3	100	61.765	ENSONIG00000002319	tbl3	100	61.765	Oreochromis_niloticus
ENSRNOG00000013429	Tbl3	97	65.038	ENSOANG00000009819	TBL3	99	65.038	Ornithorhynchus_anatinus
ENSRNOG00000013429	Tbl3	98	62.640	ENSORLG00000009312	tbl3	95	62.640	Oryzias_latipes
ENSRNOG00000013429	Tbl3	98	62.391	ENSORLG00020017711	tbl3	95	62.391	Oryzias_latipes_hni
ENSRNOG00000013429	Tbl3	98	62.236	ENSORLG00015007004	tbl3	86	62.236	Oryzias_latipes_hsok
ENSRNOG00000013429	Tbl3	99	62.531	ENSOMEG00000012684	tbl3	97	60.837	Oryzias_melastigma
ENSRNOG00000013429	Tbl3	99	87.077	ENSOGAG00000010104	TBL3	99	87.077	Otolemur_garnettii
ENSRNOG00000013429	Tbl3	87	80.308	ENSOARG00000017059	TBL3	100	80.308	Ovis_aries
ENSRNOG00000013429	Tbl3	99	88.972	ENSPPAG00000041939	TBL3	99	88.972	Pan_paniscus
ENSRNOG00000013429	Tbl3	100	86.750	ENSPPRG00000000893	TBL3	100	86.750	Panthera_pardus
ENSRNOG00000013429	Tbl3	98	86.653	ENSPTIG00000010377	TBL3	99	86.653	Panthera_tigris_altaica
ENSRNOG00000013429	Tbl3	99	88.972	ENSPTRG00000007621	TBL3	99	88.972	Pan_troglodytes
ENSRNOG00000013429	Tbl3	99	88.805	ENSPANG00000007024	TBL3	98	88.805	Papio_anubis
ENSRNOG00000013429	Tbl3	97	61.965	ENSPKIG00000000136	tbl3	87	61.965	Paramormyrops_kingsleyae
ENSRNOG00000013429	Tbl3	98	65.075	ENSPSIG00000013024	TBL3	97	65.075	Pelodiscus_sinensis
ENSRNOG00000013429	Tbl3	98	61.250	ENSPMGG00000020660	tbl3	97	61.250	Periophthalmus_magnuspinnatus
ENSRNOG00000013429	Tbl3	98	94.784	ENSPEMG00000009768	Tbl3	99	94.636	Peromyscus_maniculatus_bairdii
ENSRNOG00000013429	Tbl3	92	52.841	ENSPMAG00000004860	tbl3	93	52.841	Petromyzon_marinus
ENSRNOG00000013429	Tbl3	100	74.784	ENSPCIG00000021811	TBL3	99	74.784	Phascolarctos_cinereus
ENSRNOG00000013429	Tbl3	98	62.453	ENSPFOG00000009834	tbl3	86	62.453	Poecilia_formosa
ENSRNOG00000013429	Tbl3	98	62.453	ENSPLAG00000016437	tbl3	86	62.453	Poecilia_latipinna
ENSRNOG00000013429	Tbl3	98	62.453	ENSPMEG00000019513	tbl3	86	62.453	Poecilia_mexicana
ENSRNOG00000013429	Tbl3	99	88.833	ENSPPYG00000006977	TBL3	99	88.833	Pongo_abelii
ENSRNOG00000013429	Tbl3	99	89.460	ENSPCOG00000019749	TBL3	99	89.460	Propithecus_coquereli
ENSRNOG00000013429	Tbl3	99	87.799	ENSPVAG00000016710	TBL3	99	87.799	Pteropus_vampyrus
ENSRNOG00000013429	Tbl3	100	57.598	ENSPNYG00000017137	tbl3	100	57.598	Pundamilia_nyererei
ENSRNOG00000013429	Tbl3	98	60.200	ENSPNAG00000017527	tbl3	98	58.344	Pygocentrus_nattereri
ENSRNOG00000013429	Tbl3	99	83.960	ENSRBIG00000032982	TBL3	99	83.960	Rhinopithecus_bieti
ENSRNOG00000013429	Tbl3	99	89.460	ENSRROG00000026697	TBL3	99	89.460	Rhinopithecus_roxellana
ENSRNOG00000013429	Tbl3	95	31.043	YLR222C	-	98	31.043	Saccharomyces_cerevisiae
ENSRNOG00000013429	Tbl3	99	89.711	ENSSBOG00000013923	TBL3	99	89.711	Saimiri_boliviensis_boliviensis
ENSRNOG00000013429	Tbl3	100	73.918	ENSSHAG00000015266	TBL3	99	73.918	Sarcophilus_harrisii
ENSRNOG00000013429	Tbl3	98	62.718	ENSSFOG00015023537	tbl3	85	62.718	Scleropages_formosus
ENSRNOG00000013429	Tbl3	98	62.532	ENSSMAG00000014338	tbl3	99	62.532	Scophthalmus_maximus
ENSRNOG00000013429	Tbl3	98	61.899	ENSSDUG00000008158	tbl3	86	61.899	Seriola_dumerili
ENSRNOG00000013429	Tbl3	98	61.681	ENSSLDG00000023733	tbl3	99	60.198	Seriola_lalandi_dorsalis
ENSRNOG00000013429	Tbl3	96	52.596	ENSSPUG00000012939	TBL3	98	52.596	Sphenodon_punctatus
ENSRNOG00000013429	Tbl3	98	62.547	ENSSPAG00000010659	tbl3	86	62.547	Stegastes_partitus
ENSRNOG00000013429	Tbl3	100	88.125	ENSSSCG00000037686	TBL3	100	88.125	Sus_scrofa
ENSRNOG00000013429	Tbl3	98	64.122	ENSTGUG00000006592	-	100	64.122	Taeniopygia_guttata
ENSRNOG00000013429	Tbl3	98	60.719	ENSTRUG00000007010	tbl3	87	60.967	Takifugu_rubripes
ENSRNOG00000013429	Tbl3	99	61.481	ENSTNIG00000018011	tbl3	99	61.481	Tetraodon_nigroviridis
ENSRNOG00000013429	Tbl3	52	91.720	ENSTBEG00000000017	-	53	91.720	Tupaia_belangeri
ENSRNOG00000013429	Tbl3	100	86.125	ENSTTRG00000011395	TBL3	99	86.125	Tursiops_truncatus
ENSRNOG00000013429	Tbl3	99	87.579	ENSUAMG00000019276	TBL3	99	87.578	Ursus_americanus
ENSRNOG00000013429	Tbl3	99	82.534	ENSUMAG00000022149	TBL3	99	82.368	Ursus_maritimus
ENSRNOG00000013429	Tbl3	99	86.809	ENSVVUG00000009589	TBL3	99	86.809	Vulpes_vulpes
ENSRNOG00000013429	Tbl3	99	56.860	ENSXETG00000007217	tbl3	96	56.860	Xenopus_tropicalis
ENSRNOG00000013429	Tbl3	98	62.078	ENSXCOG00000010277	tbl3	99	62.078	Xiphophorus_couchianus
ENSRNOG00000013429	Tbl3	98	62.453	ENSXMAG00000014866	tbl3	91	63.539	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005634	nucleus	-	ISO	Component
GO:0005730	nucleolus	-	ISO	Component
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component