EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013516 (Gene tree)
Gene ID: 84486
Gene Symbol: Sf3b1
Alias: Sap155
Full Name: splicing factor 3b%2C subunit 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 39891 bases
Position: chr9:61594620-61634510
Accession: 620148
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019126	SF3b1	PF08920.10	4.2e-47	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019126	-	4954	XM_006244933	ENSRNOP00000019126	1304 (aa)	XP_006244995	G3V7T6

Gene Model

Click here to download ENSRNOG00000013516's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013516's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013516	Sf3b1	100	100.000	ENSG00000115524	SF3B1	100	100.000	Homo_sapiens
ENSRNOG00000013516	Sf3b1	100	93.622	ENSAPOG00000011894	sf3b1	100	93.622	Acanthochromis_polyacanthus
ENSRNOG00000013516	Sf3b1	99	99.923	ENSAMEG00000013809	SF3B1	99	99.923	Ailuropoda_melanoleuca
ENSRNOG00000013516	Sf3b1	100	93.216	ENSACIG00000020910	sf3b1	97	93.064	Amphilophus_citrinellus
ENSRNOG00000013516	Sf3b1	100	93.622	ENSAOCG00000004478	sf3b1	100	93.622	Amphiprion_ocellaris
ENSRNOG00000013516	Sf3b1	100	93.622	ENSAPEG00000012937	sf3b1	100	93.622	Amphiprion_percula
ENSRNOG00000013516	Sf3b1	100	93.693	ENSATEG00000020435	sf3b1	100	93.693	Anabas_testudineus
ENSRNOG00000013516	Sf3b1	99	99.382	ENSAPLG00000003993	SF3B1	99	99.382	Anas_platyrhynchos
ENSRNOG00000013516	Sf3b1	100	98.850	ENSACAG00000009612	SF3B1	100	98.850	Anolis_carolinensis
ENSRNOG00000013516	Sf3b1	100	100.000	ENSANAG00000021577	SF3B1	100	100.000	Aotus_nancymaae
ENSRNOG00000013516	Sf3b1	100	92.857	ENSACLG00000023470	sf3b1	100	92.705	Astatotilapia_calliptera
ENSRNOG00000013516	Sf3b1	100	94.149	ENSAMXG00000002219	sf3b1	100	93.997	Astyanax_mexicanus
ENSRNOG00000013516	Sf3b1	100	99.923	ENSBTAG00000008915	SF3B1	100	99.923	Bos_taurus
ENSRNOG00000013516	Sf3b1	98	66.440	WBGene00011605	sftb-1	98	66.516	Caenorhabditis_elegans
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCJAG00000003902	SF3B1	100	100.000	Callithrix_jacchus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCAFG00000010826	SF3B1	100	100.000	Canis_familiaris
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCAFG00020004750	SF3B1	100	100.000	Canis_lupus_dingo
ENSRNOG00000013516	Sf3b1	100	99.923	ENSCHIG00000015226	SF3B1	100	99.923	Capra_hircus
ENSRNOG00000013516	Sf3b1	100	99.923	ENSTSYG00000009214	SF3B1	100	99.923	Carlito_syrichta
ENSRNOG00000013516	Sf3b1	99	99.846	ENSCAPG00000006547	SF3B1	99	99.846	Cavia_aperea
ENSRNOG00000013516	Sf3b1	99	100.000	ENSCPOG00000009353	SF3B1	100	100.000	Cavia_porcellus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCCAG00000020506	SF3B1	100	100.000	Cebus_capucinus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCATG00000035735	SF3B1	100	100.000	Cercocebus_atys
ENSRNOG00000013516	Sf3b1	99	100.000	ENSCLAG00000014767	SF3B1	99	100.000	Chinchilla_lanigera
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCSAG00000011505	SF3B1	100	100.000	Chlorocebus_sabaeus
ENSRNOG00000013516	Sf3b1	76	98.462	ENSCHOG00000009860	SF3B1	76	98.438	Choloepus_hoffmanni
ENSRNOG00000013516	Sf3b1	100	99.233	ENSCPBG00000021902	SF3B1	100	99.233	Chrysemys_picta_bellii
ENSRNOG00000013516	Sf3b1	68	78.060	ENSCING00000002558	-	99	78.771	Ciona_intestinalis
ENSRNOG00000013516	Sf3b1	99	79.864	ENSCSAVG00000002559	-	99	79.470	Ciona_savignyi
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCANG00000029415	SF3B1	100	100.000	Colobus_angolensis_palliatus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCGRG00001016990	Sf3b1	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000013516	Sf3b1	100	100.000	ENSCGRG00000005301	Sf3b1	100	100.000	Cricetulus_griseus_crigri
ENSRNOG00000013516	Sf3b1	100	90.015	ENSCSEG00000003860	sf3b1	100	89.939	Cynoglossus_semilaevis
ENSRNOG00000013516	Sf3b1	96	93.676	ENSCVAG00000003680	sf3b1	99	93.676	Cyprinodon_variegatus
ENSRNOG00000013516	Sf3b1	100	93.470	ENSDARG00000056138	sf3b1	100	93.394	Danio_rerio
ENSRNOG00000013516	Sf3b1	100	99.923	ENSDNOG00000011754	SF3B1	100	99.923	Dasypus_novemcinctus
ENSRNOG00000013516	Sf3b1	99	97.297	ENSDORG00000002399	Sf3b1	100	97.297	Dipodomys_ordii
ENSRNOG00000013516	Sf3b1	100	76.618	FBgn0031266	Sf3b1	100	76.618	Drosophila_melanogaster
ENSRNOG00000013516	Sf3b1	83	99.351	ENSETEG00000009188	SF3B1	100	99.351	Echinops_telfairi
ENSRNOG00000013516	Sf3b1	99	87.270	ENSEBUG00000004325	sf3b1	100	90.191	Eptatretus_burgeri
ENSRNOG00000013516	Sf3b1	100	99.923	ENSEASG00005020159	SF3B1	98	99.923	Equus_asinus_asinus
ENSRNOG00000013516	Sf3b1	100	99.923	ENSECAG00000021657	SF3B1	98	99.923	Equus_caballus
ENSRNOG00000013516	Sf3b1	87	100.000	ENSEEUG00000000836	SF3B1	81	100.000	Erinaceus_europaeus
ENSRNOG00000013516	Sf3b1	100	93.132	ENSELUG00000005977	sf3b1	98	92.981	Esox_lucius
ENSRNOG00000013516	Sf3b1	100	100.000	ENSFCAG00000005038	SF3B1	100	100.000	Felis_catus
ENSRNOG00000013516	Sf3b1	99	99.459	ENSFALG00000004281	SF3B1	99	99.459	Ficedula_albicollis
ENSRNOG00000013516	Sf3b1	100	100.000	ENSFDAG00000017510	SF3B1	100	100.000	Fukomys_damarensis
ENSRNOG00000013516	Sf3b1	100	92.938	ENSFHEG00000014333	sf3b1	100	92.938	Fundulus_heteroclitus
ENSRNOG00000013516	Sf3b1	100	93.531	ENSGMOG00000006773	sf3b1	100	93.531	Gadus_morhua
ENSRNOG00000013516	Sf3b1	100	99.387	ENSGALG00000008038	SF3B1	100	99.387	Gallus_gallus
ENSRNOG00000013516	Sf3b1	100	91.915	ENSGAFG00000000704	sf3b1	99	93.441	Gambusia_affinis
ENSRNOG00000013516	Sf3b1	100	93.674	ENSGACG00000008839	sf3b1	100	93.674	Gasterosteus_aculeatus
ENSRNOG00000013516	Sf3b1	100	98.553	ENSGAGG00000017478	SF3B1	100	98.553	Gopherus_agassizii
ENSRNOG00000013516	Sf3b1	99	93.170	ENSGGOG00000009264	SF3B1	99	94.231	Gorilla_gorilla
ENSRNOG00000013516	Sf3b1	99	92.922	ENSHBUG00000007705	sf3b1	99	92.770	Haplochromis_burtoni
ENSRNOG00000013516	Sf3b1	99	100.000	ENSHGLG00000008285	-	99	100.000	Heterocephalus_glaber_female
ENSRNOG00000013516	Sf3b1	99	97.992	ENSHGLG00100005535	-	99	97.992	Heterocephalus_glaber_male
ENSRNOG00000013516	Sf3b1	100	92.976	ENSHCOG00000016775	sf3b1	100	92.825	Hippocampus_comes
ENSRNOG00000013516	Sf3b1	100	93.997	ENSIPUG00000013171	sf3b1	100	93.997	Ictalurus_punctatus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSSTOG00000011034	SF3B1	100	100.000	Ictidomys_tridecemlineatus
ENSRNOG00000013516	Sf3b1	99	99.922	ENSJJAG00000010903	Sf3b1	99	99.922	Jaculus_jaculus
ENSRNOG00000013516	Sf3b1	100	93.106	ENSKMAG00000004009	sf3b1	100	93.030	Kryptolebias_marmoratus
ENSRNOG00000013516	Sf3b1	100	93.588	ENSLBEG00000022208	sf3b1	100	93.435	Labrus_bergylta
ENSRNOG00000013516	Sf3b1	99	92.490	ENSLACG00000014832	SF3B1	99	92.490	Latimeria_chalumnae
ENSRNOG00000013516	Sf3b1	100	94.917	ENSLOCG00000003899	sf3b1	100	94.765	Lepisosteus_oculatus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSLAFG00000001956	SF3B1	100	100.000	Loxodonta_africana
ENSRNOG00000013516	Sf3b1	99	100.000	ENSMMUG00000022430	SF3B1	99	100.000	Macaca_mulatta
ENSRNOG00000013516	Sf3b1	100	100.000	ENSMNEG00000042333	SF3B1	100	100.000	Macaca_nemestrina
ENSRNOG00000013516	Sf3b1	95	93.478	ENSMLEG00000026141	SF3B1	99	94.027	Mandrillus_leucophaeus
ENSRNOG00000013516	Sf3b1	100	93.617	ENSMAMG00000010241	sf3b1	100	93.617	Mastacembelus_armatus
ENSRNOG00000013516	Sf3b1	100	92.857	ENSMZEG00005021254	sf3b1	100	92.705	Maylandia_zebra
ENSRNOG00000013516	Sf3b1	99	98.764	ENSMGAG00000007017	SF3B1	99	98.764	Meleagris_gallopavo
ENSRNOG00000013516	Sf3b1	99	95.753	ENSMAUG00000009071	Sf3b1	99	95.753	Mesocricetus_auratus
ENSRNOG00000013516	Sf3b1	100	99.923	ENSMICG00000013879	SF3B1	100	99.923	Microcebus_murinus
ENSRNOG00000013516	Sf3b1	99	95.525	ENSMOCG00000000455	Sf3b1	99	95.525	Microtus_ochrogaster
ENSRNOG00000013516	Sf3b1	84	93.059	ENSMMOG00000000475	sf3b1	100	93.059	Mola_mola
ENSRNOG00000013516	Sf3b1	100	99.310	ENSMODG00000012275	SF3B1	100	99.310	Monodelphis_domestica
ENSRNOG00000013516	Sf3b1	100	93.541	ENSMALG00000017211	sf3b1	100	93.541	Monopterus_albus
ENSRNOG00000013516	Sf3b1	100	100.000	MGP_CAROLIEiJ_G0014141	Sf3b1	100	100.000	Mus_caroli
ENSRNOG00000013516	Sf3b1	100	100.000	ENSMUSG00000025982	Sf3b1	100	100.000	Mus_musculus
ENSRNOG00000013516	Sf3b1	100	100.000	MGP_SPRETEiJ_G0014947	Sf3b1	100	100.000	Mus_spretus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSMPUG00000007799	SF3B1	100	100.000	Mustela_putorius_furo
ENSRNOG00000013516	Sf3b1	100	98.773	ENSMLUG00000000840	SF3B1	100	98.773	Myotis_lucifugus
ENSRNOG00000013516	Sf3b1	99	99.692	ENSNGAG00000021884	-	100	99.692	Nannospalax_galili
ENSRNOG00000013516	Sf3b1	100	89.109	ENSNBRG00000015816	sf3b1	100	89.109	Neolamprologus_brichardi
ENSRNOG00000013516	Sf3b1	100	100.000	ENSNLEG00000006861	SF3B1	100	100.000	Nomascus_leucogenys
ENSRNOG00000013516	Sf3b1	70	100.000	ENSMEUG00000015848	-	67	100.000	Notamacropus_eugenii
ENSRNOG00000013516	Sf3b1	100	88.113	ENSOPRG00000008596	SF3B1	100	88.113	Ochotona_princeps
ENSRNOG00000013516	Sf3b1	100	100.000	ENSODEG00000011153	-	100	100.000	Octodon_degus
ENSRNOG00000013516	Sf3b1	100	92.857	ENSONIG00000013758	sf3b1	100	92.705	Oreochromis_niloticus
ENSRNOG00000013516	Sf3b1	83	98.985	ENSOCUG00000012722	-	96	98.985	Oryctolagus_cuniculus
ENSRNOG00000013516	Sf3b1	100	93.389	ENSORLG00000020219	sf3b1	100	93.389	Oryzias_latipes
ENSRNOG00000013516	Sf3b1	100	93.389	ENSORLG00020001746	sf3b1	100	93.389	Oryzias_latipes_hni
ENSRNOG00000013516	Sf3b1	64	90.952	ENSORLG00015001759	sf3b1	98	90.952	Oryzias_latipes_hsok
ENSRNOG00000013516	Sf3b1	100	93.394	ENSOMEG00000019231	sf3b1	100	93.394	Oryzias_melastigma
ENSRNOG00000013516	Sf3b1	100	99.923	ENSOARG00000015374	SF3B1	100	99.923	Ovis_aries
ENSRNOG00000013516	Sf3b1	100	100.000	ENSPPAG00000035007	SF3B1	100	100.000	Pan_paniscus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSPPRG00000009090	SF3B1	100	100.000	Panthera_pardus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSPTIG00000021557	SF3B1	100	100.000	Panthera_tigris_altaica
ENSRNOG00000013516	Sf3b1	99	91.455	ENSPTRG00000012771	SF3B1	99	91.455	Pan_troglodytes
ENSRNOG00000013516	Sf3b1	100	100.000	ENSPANG00000013417	SF3B1	100	100.000	Papio_anubis
ENSRNOG00000013516	Sf3b1	100	95.053	ENSPKIG00000000784	sf3b1	100	94.901	Paramormyrops_kingsleyae
ENSRNOG00000013516	Sf3b1	99	97.991	ENSPSIG00000017222	SF3B1	98	97.991	Pelodiscus_sinensis
ENSRNOG00000013516	Sf3b1	90	94.019	ENSPMGG00000004330	sf3b1	99	93.850	Periophthalmus_magnuspinnatus
ENSRNOG00000013516	Sf3b1	99	100.000	ENSPEMG00000010699	Sf3b1	100	100.000	Peromyscus_maniculatus_bairdii
ENSRNOG00000013516	Sf3b1	100	90.053	ENSPMAG00000001311	sf3b1	100	90.205	Petromyzon_marinus
ENSRNOG00000013516	Sf3b1	100	99.233	ENSPCIG00000010642	SF3B1	100	99.233	Phascolarctos_cinereus
ENSRNOG00000013516	Sf3b1	100	93.323	ENSPFOG00000000073	sf3b1	100	93.323	Poecilia_formosa
ENSRNOG00000013516	Sf3b1	100	93.394	ENSPLAG00000002293	sf3b1	100	93.394	Poecilia_latipinna
ENSRNOG00000013516	Sf3b1	100	93.394	ENSPMEG00000000446	sf3b1	98	93.394	Poecilia_mexicana
ENSRNOG00000013516	Sf3b1	100	93.470	ENSPREG00000019652	sf3b1	100	93.470	Poecilia_reticulata
ENSRNOG00000013516	Sf3b1	100	98.814	ENSPPYG00000013044	SF3B1	96	98.814	Pongo_abelii
ENSRNOG00000013516	Sf3b1	100	99.847	ENSPCAG00000009292	SF3B1	100	99.847	Procavia_capensis
ENSRNOG00000013516	Sf3b1	100	99.923	ENSPCOG00000024074	SF3B1	100	99.923	Propithecus_coquereli
ENSRNOG00000013516	Sf3b1	100	100.000	ENSPVAG00000008302	SF3B1	100	100.000	Pteropus_vampyrus
ENSRNOG00000013516	Sf3b1	100	92.781	ENSPNYG00000014939	sf3b1	100	92.629	Pundamilia_nyererei
ENSRNOG00000013516	Sf3b1	100	93.997	ENSPNAG00000008288	sf3b1	100	93.997	Pygocentrus_nattereri
ENSRNOG00000013516	Sf3b1	99	96.237	ENSRBIG00000026096	SF3B1	100	96.237	Rhinopithecus_bieti
ENSRNOG00000013516	Sf3b1	100	100.000	ENSRROG00000031308	SF3B1	100	100.000	Rhinopithecus_roxellana
ENSRNOG00000013516	Sf3b1	100	100.000	ENSSBOG00000020080	SF3B1	100	100.000	Saimiri_boliviensis_boliviensis
ENSRNOG00000013516	Sf3b1	100	99.310	ENSSHAG00000017564	SF3B1	100	99.310	Sarcophilus_harrisii
ENSRNOG00000013516	Sf3b1	100	94.609	ENSSFOG00015021535	sf3b1	100	94.761	Scleropages_formosus
ENSRNOG00000013516	Sf3b1	99	92.955	ENSSMAG00000013977	sf3b1	99	92.803	Scophthalmus_maximus
ENSRNOG00000013516	Sf3b1	100	93.389	ENSSDUG00000017422	sf3b1	100	93.389	Seriola_dumerili
ENSRNOG00000013516	Sf3b1	100	93.313	ENSSLDG00000019495	sf3b1	100	93.313	Seriola_lalandi_dorsalis
ENSRNOG00000013516	Sf3b1	76	100.000	ENSSARG00000007016	SF3B1	76	100.000	Sorex_araneus
ENSRNOG00000013516	Sf3b1	100	99.080	ENSSPUG00000000410	SF3B1	100	99.080	Sphenodon_punctatus
ENSRNOG00000013516	Sf3b1	100	93.693	ENSSPAG00000010451	sf3b1	99	93.693	Stegastes_partitus
ENSRNOG00000013516	Sf3b1	91	99.579	ENSSSCG00000016075	SF3B1	100	100.000	Sus_scrofa
ENSRNOG00000013516	Sf3b1	100	99.310	ENSTGUG00000010553	SF3B1	100	99.310	Taeniopygia_guttata
ENSRNOG00000013516	Sf3b1	100	93.389	ENSTRUG00000015534	sf3b1	100	93.237	Takifugu_rubripes
ENSRNOG00000013516	Sf3b1	88	100.000	ENSTBEG00000008714	SF3B1	93	100.000	Tupaia_belangeri
ENSRNOG00000013516	Sf3b1	92	94.185	ENSTTRG00000003414	SF3B1	92	94.185	Tursiops_truncatus
ENSRNOG00000013516	Sf3b1	94	95.688	ENSUAMG00000018506	SF3B1	99	99.190	Ursus_americanus
ENSRNOG00000013516	Sf3b1	100	100.000	ENSUMAG00000020945	SF3B1	100	100.000	Ursus_maritimus
ENSRNOG00000013516	Sf3b1	100	91.871	ENSVPAG00000005798	SF3B1	100	91.871	Vicugna_pacos
ENSRNOG00000013516	Sf3b1	100	100.000	ENSVVUG00000025948	SF3B1	95	100.000	Vulpes_vulpes
ENSRNOG00000013516	Sf3b1	100	96.628	ENSXETG00000013339	sf3b1	100	96.628	Xenopus_tropicalis
ENSRNOG00000013516	Sf3b1	100	89.908	ENSXCOG00000018086	sf3b1	100	89.794	Xiphophorus_couchianus
ENSRNOG00000013516	Sf3b1	100	93.394	ENSXMAG00000007369	sf3b1	100	93.692	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000245	spliceosomal complex assembly	-	IEA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0000785	chromatin	-	ISO	Component
GO:0001825	blastocyst formation	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0003682	chromatin binding	-	ISO	Function
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0005634	nucleus	14724321.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005686	U2 snRNP	21873635.	IBA	Component
GO:0005686	U2 snRNP	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0009952	anterior/posterior pattern specification	-	ISO	Process
GO:0016363	nuclear matrix	-	ISO	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0030532	small nuclear ribonucleoprotein complex	-	ISO	Component
GO:0034693	U11/U12 snRNP	-	IEA	Component
GO:0034693	U11/U12 snRNP	-	ISO	Component
GO:0071004	U2-type prespliceosome	21873635.	IBA	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0071013	catalytic step 2 spliceosome	21873635.	IBA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component