EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013586 (Gene tree)
Gene ID: 307919
Gene Symbol: Snai3
Alias: LOC307919
Full Name: snail family transcriptional repressor 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 7115 bases
Position: chr19:55277549-55284663
Accession: 1309658
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000018387	zf-C2H2	PF00096.26	3.5e-25	1	4
ENSRNOP00000018387	zf-C2H2	PF00096.26	3.5e-25	2	4
ENSRNOP00000018387	zf-C2H2	PF00096.26	3.5e-25	3	4
ENSRNOP00000018387	zf-C2H2	PF00096.26	3.5e-25	4	4
ENSRNOP00000018387	zf-met	PF12874.7	3e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000018387	-	1993	XM_008772612	ENSRNOP00000018387	287 (aa)	XP_008770834	D3ZYQ2

Gene Model

Click here to download ENSRNOG00000013586's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013586's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000013586	Snai3	54	41.060	ENSRNOG00000042777	Zfp28	59	41.060
ENSRNOG00000013586	Snai3	54	41.558	ENSRNOG00000043341	Zfp51	73	41.558
ENSRNOG00000013586	Snai3	69	41.791	ENSRNOG00000030308	Zfp251	57	41.791
ENSRNOG00000013586	Snai3	55	41.772	ENSRNOG00000008239	Repin1	69	41.772
ENSRNOG00000013586	Snai3	98	42.963	ENSRNOG00000016417	Zfp136	85	42.963
ENSRNOG00000013586	Snai3	68	43.382	ENSRNOG00000003455	Zfp13	60	43.066
ENSRNOG00000013586	Snai3	55	37.500	ENSRNOG00000013460	Zfp319	79	37.500
ENSRNOG00000013586	Snai3	53	43.103	ENSRNOG00000022431	Zfp867	75	43.103
ENSRNOG00000013586	Snai3	63	39.706	ENSRNOG00000061533	AABR07001926.3	86	39.706
ENSRNOG00000013586	Snai3	54	49.351	ENSRNOG00000029490	Znf768	50	49.351
ENSRNOG00000013586	Snai3	54	42.500	ENSRNOG00000002713	Zfp672	88	42.500
ENSRNOG00000013586	Snai3	69	41.558	ENSRNOG00000032625	AC118165.1	99	41.558
ENSRNOG00000013586	Snai3	62	37.500	ENSRNOG00000049259	LOC102549842	91	37.500
ENSRNOG00000013586	Snai3	54	39.669	ENSRNOG00000023679	Prdm5	68	39.669
ENSRNOG00000013586	Snai3	55	41.176	ENSRNOG00000024056	Zfp17	73	41.176
ENSRNOG00000013586	Snai3	52	41.176	ENSRNOG00000006684	Zfp317	82	41.176
ENSRNOG00000013586	Snai3	68	40.132	ENSRNOG00000030517	Zfp879	71	40.132
ENSRNOG00000013586	Snai3	53	50.649	ENSRNOG00000014331	Zfp810	67	50.649
ENSRNOG00000013586	Snai3	54	42.308	ENSRNOG00000019416	Zfp61	75	42.308
ENSRNOG00000013586	Snai3	99	47.079	ENSRNOG00000047699	Snai2	99	47.079
ENSRNOG00000013586	Snai3	54	44.444	ENSRNOG00000048394	Zfp560	70	44.444
ENSRNOG00000013586	Snai3	54	38.971	ENSRNOG00000014712	Zfp39	61	38.971
ENSRNOG00000013586	Snai3	54	41.447	ENSRNOG00000025937	Zfp26	75	41.447

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013586	Snai3	100	69.521	ENSG00000185669	SNAI3	100	71.575	Homo_sapiens
ENSRNOG00000013586	Snai3	99	46.367	ENSG00000019549	SNAI2	99	46.416	Homo_sapiens
ENSRNOG00000013586	Snai3	99	46.528	ENSANAG00000021163	SNAI2	99	46.552	Aotus_nancymaae
ENSRNOG00000013586	Snai3	100	71.575	ENSANAG00000032748	SNAI3	100	71.575	Aotus_nancymaae
ENSRNOG00000013586	Snai3	99	66.782	ENSBTAG00000017528	SNAI3	99	66.782	Bos_taurus
ENSRNOG00000013586	Snai3	99	47.222	ENSBTAG00000013227	SNAI2	99	47.241	Bos_taurus
ENSRNOG00000013586	Snai3	99	46.367	ENSCJAG00000013499	SNAI2	99	46.416	Callithrix_jacchus
ENSRNOG00000013586	Snai3	100	65.411	ENSCAFG00000029458	SNAI3	100	67.466	Canis_familiaris
ENSRNOG00000013586	Snai3	100	65.753	ENSCAFG00020004719	SNAI3	100	67.808	Canis_lupus_dingo
ENSRNOG00000013586	Snai3	99	65.744	ENSCHIG00000018087	SNAI3	99	65.744	Capra_hircus
ENSRNOG00000013586	Snai3	99	47.222	ENSCHIG00000024410	SNAI2	99	47.241	Capra_hircus
ENSRNOG00000013586	Snai3	91	66.920	ENSTSYG00000025594	SNAI3	91	68.821	Carlito_syrichta
ENSRNOG00000013586	Snai3	99	46.367	ENSCCAG00000024100	SNAI2	99	46.416	Cebus_capucinus
ENSRNOG00000013586	Snai3	99	46.367	ENSCATG00000028656	SNAI2	99	46.416	Cercocebus_atys
ENSRNOG00000013586	Snai3	100	71.233	ENSCATG00000031714	SNAI3	100	71.233	Cercocebus_atys
ENSRNOG00000013586	Snai3	100	66.438	ENSCSAG00000003047	SNAI3	100	66.438	Chlorocebus_sabaeus
ENSRNOG00000013586	Snai3	99	46.367	ENSCSAG00000014787	SNAI2	99	46.416	Chlorocebus_sabaeus
ENSRNOG00000013586	Snai3	99	59.532	ENSCPBG00000023474	SNAI3	99	59.532	Chrysemys_picta_bellii
ENSRNOG00000013586	Snai3	99	47.797	ENSCPBG00000020255	SNAI2	99	45.890	Chrysemys_picta_bellii
ENSRNOG00000013586	Snai3	63	51.934	ENSCSAVG00000009819	-	89	51.934	Ciona_savignyi
ENSRNOG00000013586	Snai3	99	46.367	ENSCANG00000029656	SNAI2	99	46.416	Colobus_angolensis_palliatus
ENSRNOG00000013586	Snai3	93	69.373	ENSCANG00000031124	SNAI3	83	69.373	Colobus_angolensis_palliatus
ENSRNOG00000013586	Snai3	100	87.456	ENSCGRG00001011389	Snai3	100	87.456	Cricetulus_griseus_chok1gshd
ENSRNOG00000013586	Snai3	100	87.456	ENSCGRG00000014932	Snai3	100	87.456	Cricetulus_griseus_crigri
ENSRNOG00000013586	Snai3	79	48.918	ENSDNOG00000035204	-	100	51.515	Dasypus_novemcinctus
ENSRNOG00000013586	Snai3	92	64.925	ENSEASG00005000614	SNAI3	88	67.164	Equus_asinus_asinus
ENSRNOG00000013586	Snai3	99	66.667	ENSECAG00000012131	SNAI3	99	68.729	Equus_caballus
ENSRNOG00000013586	Snai3	100	62.671	ENSEEUG00000000841	SNAI3	100	62.671	Erinaceus_europaeus
ENSRNOG00000013586	Snai3	99	43.624	ENSELUG00000021795	SNAI2	78	44.966	Esox_lucius
ENSRNOG00000013586	Snai3	99	48.276	ENSELUG00000018742	-	99	48.276	Esox_lucius
ENSRNOG00000013586	Snai3	100	63.574	ENSFCAG00000043885	SNAI3	100	63.574	Felis_catus
ENSRNOG00000013586	Snai3	99	59.184	ENSGAGG00000023571	SNAI3	99	59.184	Gopherus_agassizii
ENSRNOG00000013586	Snai3	99	47.797	ENSGAGG00000000426	SNAI2	99	45.890	Gopherus_agassizii
ENSRNOG00000013586	Snai3	99	46.367	ENSGGOG00000000959	SNAI2	99	46.416	Gorilla_gorilla
ENSRNOG00000013586	Snai3	100	70.205	ENSGGOG00000012559	SNAI3	100	72.260	Gorilla_gorilla
ENSRNOG00000013586	Snai3	99	47.241	ENSIPUG00000000131	snai2	99	47.241	Ictalurus_punctatus
ENSRNOG00000013586	Snai3	99	46.207	ENSSTOG00000028743	SNAI2	99	45.205	Ictidomys_tridecemlineatus
ENSRNOG00000013586	Snai3	100	78.767	ENSJJAG00000019934	Snai3	100	80.479	Jaculus_jaculus
ENSRNOG00000013586	Snai3	99	47.079	ENSLOCG00000005992	SNAI2	99	47.119	Lepisosteus_oculatus
ENSRNOG00000013586	Snai3	99	46.392	ENSLAFG00000009299	SNAI2	99	45.548	Loxodonta_africana
ENSRNOG00000013586	Snai3	100	65.753	ENSLAFG00000005117	SNAI3	100	67.123	Loxodonta_africana
ENSRNOG00000013586	Snai3	99	46.367	ENSMFAG00000046061	SNAI2	99	46.416	Macaca_fascicularis
ENSRNOG00000013586	Snai3	100	71.918	ENSMFAG00000032064	SNAI3	100	71.918	Macaca_fascicularis
ENSRNOG00000013586	Snai3	100	71.918	ENSMMUG00000008716	SNAI3	100	71.918	Macaca_mulatta
ENSRNOG00000013586	Snai3	99	46.367	ENSMMUG00000016195	SNAI2	99	46.416	Macaca_mulatta
ENSRNOG00000013586	Snai3	100	71.918	ENSMNEG00000045515	SNAI3	100	71.918	Macaca_nemestrina
ENSRNOG00000013586	Snai3	99	46.367	ENSMNEG00000034216	SNAI2	99	46.416	Macaca_nemestrina
ENSRNOG00000013586	Snai3	91	70.037	ENSMLEG00000033191	SNAI3	91	70.037	Mandrillus_leucophaeus
ENSRNOG00000013586	Snai3	99	46.367	ENSMLEG00000034407	SNAI2	99	46.416	Mandrillus_leucophaeus
ENSRNOG00000013586	Snai3	100	85.714	ENSMAUG00000001685	Snai3	100	85.714	Mesocricetus_auratus
ENSRNOG00000013586	Snai3	55	64.848	ENSMAUG00000008119	Snai2	99	46.441	Mesocricetus_auratus
ENSRNOG00000013586	Snai3	100	86.411	ENSMOCG00000003536	Snai3	100	86.411	Microtus_ochrogaster
ENSRNOG00000013586	Snai3	99	46.758	ENSMODG00000010173	SNAI2	99	46.758	Monodelphis_domestica
ENSRNOG00000013586	Snai3	100	90.244	MGP_CAROLIEiJ_G0031662	Snai3	100	90.244	Mus_caroli
ENSRNOG00000013586	Snai3	99	46.897	MGP_CAROLIEiJ_G0020483	Snai2	99	45.734	Mus_caroli
ENSRNOG00000013586	Snai3	100	91.638	ENSMUSG00000006587	Snai3	100	91.638	Mus_musculus
ENSRNOG00000013586	Snai3	99	46.897	ENSMUSG00000022676	Snai2	99	45.734	Mus_musculus
ENSRNOG00000013586	Snai3	99	46.897	MGP_PahariEiJ_G0016188	Snai2	99	45.734	Mus_pahari
ENSRNOG00000013586	Snai3	100	90.972	MGP_PahariEiJ_G0023260	Snai3	100	90.972	Mus_pahari
ENSRNOG00000013586	Snai3	100	91.638	MGP_SPRETEiJ_G0032780	Snai3	100	91.638	Mus_spretus
ENSRNOG00000013586	Snai3	99	46.897	MGP_SPRETEiJ_G0021379	Snai2	99	45.734	Mus_spretus
ENSRNOG00000013586	Snai3	100	61.301	ENSMPUG00000008104	SNAI3	100	63.356	Mustela_putorius_furo
ENSRNOG00000013586	Snai3	99	46.713	ENSMLUG00000001086	SNAI2	99	46.075	Myotis_lucifugus
ENSRNOG00000013586	Snai3	100	78.082	ENSNGAG00000023039	Snai3	100	78.082	Nannospalax_galili
ENSRNOG00000013586	Snai3	99	46.713	ENSNLEG00000013421	SNAI2	99	47.751	Nomascus_leucogenys
ENSRNOG00000013586	Snai3	100	70.548	ENSNLEG00000000595	SNAI3	100	72.603	Nomascus_leucogenys
ENSRNOG00000013586	Snai3	98	47.059	ENSMEUG00000009510	SNAI2	100	47.059	Notamacropus_eugenii
ENSRNOG00000013586	Snai3	99	46.552	ENSOANG00000007267	SNAI2	99	45.548	Ornithorhynchus_anatinus
ENSRNOG00000013586	Snai3	100	65.052	ENSOGAG00000000419	SNAI3	100	67.466	Otolemur_garnettii
ENSRNOG00000013586	Snai3	90	47.388	ENSOARG00000013069	-	99	47.388	Ovis_aries
ENSRNOG00000013586	Snai3	99	47.222	ENSOARG00000013030	SNAI2	99	47.241	Ovis_aries
ENSRNOG00000013586	Snai3	100	69.521	ENSPPAG00000043301	SNAI3	100	71.575	Pan_paniscus
ENSRNOG00000013586	Snai3	99	46.367	ENSPPAG00000015662	SNAI2	99	46.416	Pan_paniscus
ENSRNOG00000013586	Snai3	99	63.763	ENSPPRG00000008511	SNAI3	99	63.763	Panthera_pardus
ENSRNOG00000013586	Snai3	100	69.521	ENSPTRG00000008460	SNAI3	100	71.575	Pan_troglodytes
ENSRNOG00000013586	Snai3	99	46.367	ENSPTRG00000020235	SNAI2	99	46.416	Pan_troglodytes
ENSRNOG00000013586	Snai3	100	71.575	ENSPANG00000000509	SNAI3	100	71.575	Papio_anubis
ENSRNOG00000013586	Snai3	99	46.367	ENSPANG00000017540	SNAI2	99	46.416	Papio_anubis
ENSRNOG00000013586	Snai3	99	46.945	ENSPKIG00000007872	SNAI3	99	46.945	Paramormyrops_kingsleyae
ENSRNOG00000013586	Snai3	99	45.946	ENSPKIG00000002254	SNAI2	99	46.801	Paramormyrops_kingsleyae
ENSRNOG00000013586	Snai3	75	60.000	ENSPSIG00000004262	SNAI3	89	60.000	Pelodiscus_sinensis
ENSRNOG00000013586	Snai3	99	47.797	ENSPSIG00000016395	SNAI2	99	45.890	Pelodiscus_sinensis
ENSRNOG00000013586	Snai3	54	65.806	ENSPMGG00000013179	SNAI2	99	44.702	Periophthalmus_magnuspinnatus
ENSRNOG00000013586	Snai3	99	46.758	ENSPCIG00000025156	SNAI2	99	46.758	Phascolarctos_cinereus
ENSRNOG00000013586	Snai3	100	70.548	ENSPPYG00000007643	SNAI3	100	72.603	Pongo_abelii
ENSRNOG00000013586	Snai3	99	46.367	ENSPPYG00000018578	SNAI2	99	46.416	Pongo_abelii
ENSRNOG00000013586	Snai3	99	46.207	ENSPCOG00000015656	SNAI2	99	46.416	Propithecus_coquereli
ENSRNOG00000013586	Snai3	100	72.603	ENSRBIG00000025770	SNAI3	100	72.603	Rhinopithecus_bieti
ENSRNOG00000013586	Snai3	99	46.367	ENSRBIG00000041133	SNAI2	99	46.416	Rhinopithecus_bieti
ENSRNOG00000013586	Snai3	100	71.575	ENSRROG00000032757	SNAI3	100	71.575	Rhinopithecus_roxellana
ENSRNOG00000013586	Snai3	99	46.367	ENSRROG00000032273	SNAI2	99	46.416	Rhinopithecus_roxellana
ENSRNOG00000013586	Snai3	99	46.367	ENSSBOG00000035774	SNAI2	99	46.416	Saimiri_boliviensis_boliviensis
ENSRNOG00000013586	Snai3	99	46.758	ENSSHAG00000004205	SNAI2	99	46.758	Sarcophilus_harrisii
ENSRNOG00000013586	Snai3	99	46.129	ENSSFOG00015016115	snai3	93	46.452	Scleropages_formosus
ENSRNOG00000013586	Snai3	99	45.973	ENSSFOG00015018025	SNAI2	99	47.826	Scleropages_formosus
ENSRNOG00000013586	Snai3	99	47.119	ENSSPUG00000005427	-	99	47.119	Sphenodon_punctatus
ENSRNOG00000013586	Snai3	99	63.946	ENSTTRG00000006262	SNAI3	99	63.946	Tursiops_truncatus
ENSRNOG00000013586	Snai3	100	67.123	ENSUAMG00000020030	SNAI3	100	68.836	Ursus_americanus
ENSRNOG00000013586	Snai3	100	66.096	ENSVVUG00000003233	SNAI3	100	68.151	Vulpes_vulpes
ENSRNOG00000013586	Snai3	99	47.387	ENSXETG00000024006	snai2	99	47.387	Xenopus_tropicalis

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	-	IEA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000977	RNA polymerase II regulatory region sequence-specific DNA binding	-	ISO	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	IEA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	-	ISO	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	IEA	Function
GO:0001227	DNA-binding transcription repressor activity, RNA polymerase II-specific	-	ISO	Function
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	-	ISO	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005667	transcription factor complex	-	IEA	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0006355	regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0006355	regulation of transcription, DNA-templated	-	ISO	Process
GO:0006357	regulation of transcription by RNA polymerase II	-	ISO	Process