EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013756 (Gene tree)
Gene ID: 291060
Gene Symbol: Snrnp48
Alias: LOC291060|RGD1309020
Full Name: small nuclear ribonucleoprotein U11/U12 subunit 48
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 35480 bases
Position: chr17:27243781-27279260
Accession: 1309020
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000018508	zf-U11-48K	PF05253.12	2.6e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000018508	-	1200	XM_006253787	ENSRNOP00000018508	337 (aa)	XP_006253849	D3ZJA5

Gene Model

Click here to download ENSRNOG00000013756's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013756's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013756	Snrnp48	100	87.021	ENSG00000168566	SNRNP48	100	87.906	Homo_sapiens
ENSRNOG00000013756	Snrnp48	82	48.592	ENSAPOG00000021430	snrnp48	96	43.466	Acanthochromis_polyacanthus
ENSRNOG00000013756	Snrnp48	99	85.303	ENSAMEG00000017349	SNRNP48	100	85.303	Ailuropoda_melanoleuca
ENSRNOG00000013756	Snrnp48	93	44.514	ENSACIG00000002032	snrnp48	96	42.433	Amphilophus_citrinellus
ENSRNOG00000013756	Snrnp48	82	48.592	ENSAOCG00000010562	snrnp48	96	43.875	Amphiprion_ocellaris
ENSRNOG00000013756	Snrnp48	82	48.582	ENSAPEG00000003231	snrnp48	96	43.840	Amphiprion_percula
ENSRNOG00000013756	Snrnp48	77	50.000	ENSATEG00000020210	snrnp48	92	44.643	Anabas_testudineus
ENSRNOG00000013756	Snrnp48	82	64.931	ENSACAG00000002811	SNRNP48	89	64.931	Anolis_carolinensis
ENSRNOG00000013756	Snrnp48	100	86.431	ENSANAG00000033538	SNRNP48	100	87.316	Aotus_nancymaae
ENSRNOG00000013756	Snrnp48	93	46.273	ENSAMXG00000015309	snrnp48	97	44.838	Astyanax_mexicanus
ENSRNOG00000013756	Snrnp48	100	82.941	ENSBTAG00000001123	SNRNP48	100	83.824	Bos_taurus
ENSRNOG00000013756	Snrnp48	100	87.021	ENSCJAG00000021330	SNRNP48	100	87.906	Callithrix_jacchus
ENSRNOG00000013756	Snrnp48	99	88.095	ENSCAFG00000009574	SNRNP48	83	87.834	Canis_familiaris
ENSRNOG00000013756	Snrnp48	99	88.131	ENSCAFG00020013203	SNRNP48	99	88.131	Canis_lupus_dingo
ENSRNOG00000013756	Snrnp48	100	84.118	ENSCHIG00000015216	SNRNP48	100	85.000	Capra_hircus
ENSRNOG00000013756	Snrnp48	100	86.431	ENSTSYG00000000698	SNRNP48	100	87.316	Carlito_syrichta
ENSRNOG00000013756	Snrnp48	91	83.388	ENSCAPG00000006768	SNRNP48	100	83.388	Cavia_aperea
ENSRNOG00000013756	Snrnp48	100	86.431	ENSCPOG00000007910	SNRNP48	100	86.431	Cavia_porcellus
ENSRNOG00000013756	Snrnp48	100	85.546	ENSCCAG00000035652	SNRNP48	100	86.431	Cebus_capucinus
ENSRNOG00000013756	Snrnp48	100	86.431	ENSCATG00000033947	SNRNP48	100	87.316	Cercocebus_atys
ENSRNOG00000013756	Snrnp48	100	86.431	ENSCLAG00000003765	SNRNP48	100	87.316	Chinchilla_lanigera
ENSRNOG00000013756	Snrnp48	100	87.021	ENSCSAG00000007409	SNRNP48	100	87.906	Chlorocebus_sabaeus
ENSRNOG00000013756	Snrnp48	84	64.452	ENSCPBG00000019146	SNRNP48	91	64.452	Chrysemys_picta_bellii
ENSRNOG00000013756	Snrnp48	100	87.021	ENSCANG00000030017	SNRNP48	100	87.906	Colobus_angolensis_palliatus
ENSRNOG00000013756	Snrnp48	100	94.065	ENSCGRG00001001076	-	100	94.065	Cricetulus_griseus_chok1gshd
ENSRNOG00000013756	Snrnp48	99	73.874	ENSCGRG00001008805	-	95	72.673	Cricetulus_griseus_chok1gshd
ENSRNOG00000013756	Snrnp48	100	94.065	ENSCGRG00000007781	Snrnp48	100	94.065	Cricetulus_griseus_crigri
ENSRNOG00000013756	Snrnp48	77	49.430	ENSCSEG00000000722	snrnp48	72	49.430	Cynoglossus_semilaevis
ENSRNOG00000013756	Snrnp48	95	45.783	ENSCVAG00000019829	snrnp48	67	50.566	Cyprinodon_variegatus
ENSRNOG00000013756	Snrnp48	82	46.099	ENSDARG00000039989	snrnp48	96	43.544	Danio_rerio
ENSRNOG00000013756	Snrnp48	99	86.866	ENSDNOG00000014978	SNRNP48	99	86.866	Dasypus_novemcinctus
ENSRNOG00000013756	Snrnp48	99	86.136	ENSDORG00000015140	Snrnp48	99	86.136	Dipodomys_ordii
ENSRNOG00000013756	Snrnp48	99	88.166	ENSEASG00005012021	SNRNP48	99	88.166	Equus_asinus_asinus
ENSRNOG00000013756	Snrnp48	100	88.791	ENSECAG00000026937	SNRNP48	100	88.791	Equus_caballus
ENSRNOG00000013756	Snrnp48	100	66.667	ENSEEUG00000015437	SNRNP48	99	66.667	Erinaceus_europaeus
ENSRNOG00000013756	Snrnp48	88	47.541	ENSELUG00000009766	snrnp48	78	48.410	Esox_lucius
ENSRNOG00000013756	Snrnp48	100	88.496	ENSFCAG00000018853	SNRNP48	100	88.496	Felis_catus
ENSRNOG00000013756	Snrnp48	83	64.384	ENSFALG00000007797	SNRNP48	93	65.068	Ficedula_albicollis
ENSRNOG00000013756	Snrnp48	99	84.615	ENSFDAG00000009231	SNRNP48	99	86.686	Fukomys_damarensis
ENSRNOG00000013756	Snrnp48	59	56.931	ENSFHEG00000014647	snrnp48	97	47.667	Fundulus_heteroclitus
ENSRNOG00000013756	Snrnp48	73	47.581	ENSGMOG00000018599	-	81	47.191	Gadus_morhua
ENSRNOG00000013756	Snrnp48	79	65.217	ENSGALG00000013005	SNRNP48	93	65.217	Gallus_gallus
ENSRNOG00000013756	Snrnp48	75	49.219	ENSGAFG00000021639	snrnp48	93	43.658	Gambusia_affinis
ENSRNOG00000013756	Snrnp48	74	49.801	ENSGACG00000017756	-	96	43.353	Gasterosteus_aculeatus
ENSRNOG00000013756	Snrnp48	84	63.667	ENSGAGG00000000865	SNRNP48	97	63.667	Gopherus_agassizii
ENSRNOG00000013756	Snrnp48	100	87.021	ENSGGOG00000013220	SNRNP48	100	87.906	Gorilla_gorilla
ENSRNOG00000013756	Snrnp48	75	48.438	ENSHBUG00000017066	snrnp48	95	42.982	Haplochromis_burtoni
ENSRNOG00000013756	Snrnp48	99	86.095	ENSHGLG00000015241	SNRNP48	99	86.982	Heterocephalus_glaber_female
ENSRNOG00000013756	Snrnp48	99	86.095	ENSHGLG00100010027	SNRNP48	99	86.982	Heterocephalus_glaber_male
ENSRNOG00000013756	Snrnp48	72	47.791	ENSHCOG00000014066	snrnp48	92	41.908	Hippocampus_comes
ENSRNOG00000013756	Snrnp48	100	89.971	ENSSTOG00000014635	SNRNP48	100	91.000	Ictidomys_tridecemlineatus
ENSRNOG00000013756	Snrnp48	100	84.366	ENSJJAG00000011495	Snrnp48	100	84.366	Jaculus_jaculus
ENSRNOG00000013756	Snrnp48	91	46.302	ENSKMAG00000016514	snrnp48	94	43.988	Kryptolebias_marmoratus
ENSRNOG00000013756	Snrnp48	77	48.659	ENSLBEG00000026249	snrnp48	95	43.516	Labrus_bergylta
ENSRNOG00000013756	Snrnp48	98	54.030	ENSLACG00000003958	SNRNP48	99	52.907	Latimeria_chalumnae
ENSRNOG00000013756	Snrnp48	84	52.595	ENSLOCG00000004187	snrnp48	95	50.445	Lepisosteus_oculatus
ENSRNOG00000013756	Snrnp48	100	84.661	ENSLAFG00000011152	SNRNP48	100	84.661	Loxodonta_africana
ENSRNOG00000013756	Snrnp48	100	87.316	ENSMFAG00000045216	SNRNP48	100	88.201	Macaca_fascicularis
ENSRNOG00000013756	Snrnp48	100	87.316	ENSMMUG00000014785	SNRNP48	100	88.201	Macaca_mulatta
ENSRNOG00000013756	Snrnp48	100	87.021	ENSMNEG00000042269	SNRNP48	100	87.906	Macaca_nemestrina
ENSRNOG00000013756	Snrnp48	100	87.316	ENSMLEG00000034004	SNRNP48	100	88.201	Mandrillus_leucophaeus
ENSRNOG00000013756	Snrnp48	77	48.669	ENSMAMG00000018673	snrnp48	83	44.315	Mastacembelus_armatus
ENSRNOG00000013756	Snrnp48	82	64.966	ENSMGAG00000006037	SNRNP48	99	65.753	Meleagris_gallopavo
ENSRNOG00000013756	Snrnp48	100	94.065	ENSMAUG00000011944	Snrnp48	100	94.065	Mesocricetus_auratus
ENSRNOG00000013756	Snrnp48	100	87.021	ENSMICG00000012497	SNRNP48	100	87.906	Microcebus_murinus
ENSRNOG00000013756	Snrnp48	100	93.769	ENSMOCG00000015555	Snrnp48	100	93.769	Microtus_ochrogaster
ENSRNOG00000013756	Snrnp48	57	51.546	ENSMMOG00000003072	-	61	51.546	Mola_mola
ENSRNOG00000013756	Snrnp48	99	69.942	ENSMODG00000009996	SNRNP48	93	70.231	Monodelphis_domestica
ENSRNOG00000013756	Snrnp48	96	45.399	ENSMALG00000005725	snrnp48	95	43.567	Monopterus_albus
ENSRNOG00000013756	Snrnp48	100	95.549	MGP_CAROLIEiJ_G0018441	Snrnp48	100	95.549	Mus_caroli
ENSRNOG00000013756	Snrnp48	100	95.252	ENSMUSG00000021431	Snrnp48	100	95.252	Mus_musculus
ENSRNOG00000013756	Snrnp48	100	95.846	MGP_PahariEiJ_G0019509	Snrnp48	100	95.846	Mus_pahari
ENSRNOG00000013756	Snrnp48	100	94.955	MGP_SPRETEiJ_G0019321	Snrnp48	100	94.955	Mus_spretus
ENSRNOG00000013756	Snrnp48	99	89.645	ENSNGAG00000004849	Snrnp48	99	89.645	Nannospalax_galili
ENSRNOG00000013756	Snrnp48	75	48.047	ENSNBRG00000012127	snrnp48	95	42.690	Neolamprologus_brichardi
ENSRNOG00000013756	Snrnp48	100	87.316	ENSNLEG00000011667	SNRNP48	100	88.201	Nomascus_leucogenys
ENSRNOG00000013756	Snrnp48	95	78.947	ENSOPRG00000015471	SNRNP48	100	78.328	Ochotona_princeps
ENSRNOG00000013756	Snrnp48	96	44.985	ENSONIG00000001520	snrnp48	95	43.064	Oreochromis_niloticus
ENSRNOG00000013756	Snrnp48	57	61.538	ENSOANG00000019888	-	100	61.538	Ornithorhynchus_anatinus
ENSRNOG00000013756	Snrnp48	85	88.112	ENSOCUG00000005168	SNRNP48	100	87.829	Oryctolagus_cuniculus
ENSRNOG00000013756	Snrnp48	89	47.403	ENSORLG00000015654	snrnp48	96	45.161	Oryzias_latipes
ENSRNOG00000013756	Snrnp48	89	46.429	ENSORLG00020015976	snrnp48	82	44.575	Oryzias_latipes_hni
ENSRNOG00000013756	Snrnp48	89	47.403	ENSORLG00015022379	snrnp48	82	45.455	Oryzias_latipes_hsok
ENSRNOG00000013756	Snrnp48	82	47.887	ENSOMEG00000022007	snrnp48	95	44.023	Oryzias_melastigma
ENSRNOG00000013756	Snrnp48	91	87.213	ENSOGAG00000005275	SNRNP48	96	86.120	Otolemur_garnettii
ENSRNOG00000013756	Snrnp48	85	85.017	ENSOARG00000017319	SNRNP48	100	85.017	Ovis_aries
ENSRNOG00000013756	Snrnp48	100	87.316	ENSPPAG00000032873	SNRNP48	100	88.201	Pan_paniscus
ENSRNOG00000013756	Snrnp48	100	88.201	ENSPPRG00000004283	SNRNP48	100	88.201	Panthera_pardus
ENSRNOG00000013756	Snrnp48	85	88.502	ENSPTIG00000013502	SNRNP48	100	88.502	Panthera_tigris_altaica
ENSRNOG00000013756	Snrnp48	100	87.316	ENSPTRG00000017703	SNRNP48	100	88.201	Pan_troglodytes
ENSRNOG00000013756	Snrnp48	100	87.316	ENSPANG00000000771	SNRNP48	100	88.201	Papio_anubis
ENSRNOG00000013756	Snrnp48	94	46.647	ENSPKIG00000013703	snrnp48	59	50.526	Paramormyrops_kingsleyae
ENSRNOG00000013756	Snrnp48	84	63.123	ENSPSIG00000002213	SNRNP48	94	63.211	Pelodiscus_sinensis
ENSRNOG00000013756	Snrnp48	75	48.249	ENSPMGG00000008120	snrnp48	90	48.249	Periophthalmus_magnuspinnatus
ENSRNOG00000013756	Snrnp48	100	94.659	ENSPEMG00000008872	Snrnp48	100	95.789	Peromyscus_maniculatus_bairdii
ENSRNOG00000013756	Snrnp48	75	50.781	ENSPFOG00000003578	snrnp48	93	45.562	Poecilia_formosa
ENSRNOG00000013756	Snrnp48	69	50.000	ENSPLAG00000002290	snrnp48	79	50.000	Poecilia_latipinna
ENSRNOG00000013756	Snrnp48	75	50.000	ENSPMEG00000018033	snrnp48	93	44.970	Poecilia_mexicana
ENSRNOG00000013756	Snrnp48	74	50.199	ENSPREG00000018541	snrnp48	93	45.266	Poecilia_reticulata
ENSRNOG00000013756	Snrnp48	100	85.841	ENSPPYG00000016209	SNRNP48	100	86.726	Pongo_abelii
ENSRNOG00000013756	Snrnp48	79	68.914	ENSPCAG00000011991	SNRNP48	99	68.914	Procavia_capensis
ENSRNOG00000013756	Snrnp48	100	86.726	ENSPVAG00000002854	SNRNP48	100	86.726	Pteropus_vampyrus
ENSRNOG00000013756	Snrnp48	75	48.438	ENSPNYG00000015399	snrnp48	90	46.367	Pundamilia_nyererei
ENSRNOG00000013756	Snrnp48	92	88.065	ENSRBIG00000043856	SNRNP48	97	88.599	Rhinopithecus_bieti
ENSRNOG00000013756	Snrnp48	100	87.021	ENSRROG00000043229	SNRNP48	100	87.906	Rhinopithecus_roxellana
ENSRNOG00000013756	Snrnp48	100	87.021	ENSSBOG00000019486	SNRNP48	100	87.906	Saimiri_boliviensis_boliviensis
ENSRNOG00000013756	Snrnp48	99	69.914	ENSSHAG00000014483	SNRNP48	100	70.201	Sarcophilus_harrisii
ENSRNOG00000013756	Snrnp48	74	51.953	ENSSFOG00015006610	snrnp48	70	49.164	Scleropages_formosus
ENSRNOG00000013756	Snrnp48	85	47.440	ENSSDUG00000014953	snrnp48	92	43.750	Seriola_dumerili
ENSRNOG00000013756	Snrnp48	85	47.782	ENSSLDG00000005989	snrnp48	92	44.048	Seriola_lalandi_dorsalis
ENSRNOG00000013756	Snrnp48	84	64.094	ENSSPUG00000006257	SNRNP48	85	65.772	Sphenodon_punctatus
ENSRNOG00000013756	Snrnp48	95	45.122	ENSSPAG00000006454	snrnp48	93	45.646	Stegastes_partitus
ENSRNOG00000013756	Snrnp48	86	63.545	ENSTGUG00000007575	SNRNP48	95	63.545	Taeniopygia_guttata
ENSRNOG00000013756	Snrnp48	74	50.598	ENSTRUG00000007031	snrnp48	92	46.386	Takifugu_rubripes
ENSRNOG00000013756	Snrnp48	75	47.059	ENSTNIG00000012977	-	75	47.059	Tetraodon_nigroviridis
ENSRNOG00000013756	Snrnp48	100	71.893	ENSTBEG00000015620	SNRNP48	100	71.893	Tupaia_belangeri
ENSRNOG00000013756	Snrnp48	100	86.726	ENSTTRG00000016715	SNRNP48	100	86.726	Tursiops_truncatus
ENSRNOG00000013756	Snrnp48	100	87.611	ENSUAMG00000003690	SNRNP48	100	88.496	Ursus_americanus
ENSRNOG00000013756	Snrnp48	85	83.972	ENSVPAG00000003557	SNRNP48	100	83.972	Vicugna_pacos
ENSRNOG00000013756	Snrnp48	99	88.131	ENSVVUG00000004996	SNRNP48	99	88.131	Vulpes_vulpes
ENSRNOG00000013756	Snrnp48	86	53.846	ENSXETG00000020447	snrnp48	97	52.226	Xenopus_tropicalis
ENSRNOG00000013756	Snrnp48	69	48.936	ENSXCOG00000004478	snrnp48	71	48.936	Xiphophorus_couchianus
ENSRNOG00000013756	Snrnp48	84	47.887	ENSXMAG00000013595	snrnp48	93	45.266	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005654	nucleoplasm	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005689	U12-type spliceosomal complex	21873635.	IBA	Component
GO:0005689	U12-type spliceosomal complex	-	ISO	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component