EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000013773 (Gene tree)
Gene ID: 79049
Gene Symbol: Secisbp2
Alias: Sbp2
Full Name: SECIS binding protein 2
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 31206 bases
Position: chr17:13555349-13586554
Accession: 620991
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000039532	Ribosomal_L7Ae	PF01248.26	7.3e-21	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000041371	-	3240	XM_008771506	ENSRNOP00000039532	846 (aa)	XP_008769728	F1LPQ8

Gene Model

Click here to download ENSRNOG00000013773's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013773's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000013773	Secisbp2	100	71.911	ENSG00000187742	SECISBP2	100	71.911	Homo_sapiens
ENSRNOG00000013773	Secisbp2	53	49.378	ENSAPOG00000005939	secisbp2	82	41.100	Acanthochromis_polyacanthus
ENSRNOG00000013773	Secisbp2	99	65.851	ENSAMEG00000003349	SECISBP2	99	65.851	Ailuropoda_melanoleuca
ENSRNOG00000013773	Secisbp2	53	49.180	ENSAOCG00000019052	secisbp2	61	48.460	Amphiprion_ocellaris
ENSRNOG00000013773	Secisbp2	53	48.770	ENSAPEG00000012971	secisbp2	61	48.049	Amphiprion_percula
ENSRNOG00000013773	Secisbp2	53	46.906	ENSATEG00000001095	secisbp2	79	40.058	Anabas_testudineus
ENSRNOG00000013773	Secisbp2	98	41.648	ENSAPLG00000013053	SECISBP2	99	41.761	Anas_platyrhynchos
ENSRNOG00000013773	Secisbp2	92	43.039	ENSACAG00000016594	SECISBP2	95	42.707	Anolis_carolinensis
ENSRNOG00000013773	Secisbp2	100	72.145	ENSANAG00000028208	SECISBP2	100	72.145	Aotus_nancymaae
ENSRNOG00000013773	Secisbp2	53	48.770	ENSACLG00000019976	secisbp2	60	49.064	Astatotilapia_calliptera
ENSRNOG00000013773	Secisbp2	53	48.297	ENSAMXG00000015953	secisbp2	62	48.491	Astyanax_mexicanus
ENSRNOG00000013773	Secisbp2	100	67.981	ENSBTAG00000001939	SECISBP2	100	76.210	Bos_taurus
ENSRNOG00000013773	Secisbp2	100	72.028	ENSCJAG00000007806	SECISBP2	100	72.028	Callithrix_jacchus
ENSRNOG00000013773	Secisbp2	100	69.026	ENSCAFG00000002188	SECISBP2	100	69.026	Canis_familiaris
ENSRNOG00000013773	Secisbp2	99	68.808	ENSCAFG00020007224	SECISBP2	99	68.808	Canis_lupus_dingo
ENSRNOG00000013773	Secisbp2	100	67.749	ENSCHIG00000010657	SECISBP2	99	67.749	Capra_hircus
ENSRNOG00000013773	Secisbp2	88	66.711	ENSTSYG00000014119	SECISBP2	97	66.842	Carlito_syrichta
ENSRNOG00000013773	Secisbp2	84	78.191	ENSCAPG00000008522	SECISBP2	99	78.191	Cavia_aperea
ENSRNOG00000013773	Secisbp2	100	69.464	ENSCPOG00000014270	SECISBP2	100	70.198	Cavia_porcellus
ENSRNOG00000013773	Secisbp2	100	72.261	ENSCCAG00000013350	SECISBP2	100	72.261	Cebus_capucinus
ENSRNOG00000013773	Secisbp2	100	72.061	ENSCATG00000008304	SECISBP2	100	72.061	Cercocebus_atys
ENSRNOG00000013773	Secisbp2	100	71.596	ENSCLAG00000001166	SECISBP2	96	71.948	Chinchilla_lanigera
ENSRNOG00000013773	Secisbp2	100	71.711	ENSCSAG00000007310	SECISBP2	100	71.711	Chlorocebus_sabaeus
ENSRNOG00000013773	Secisbp2	85	78.788	ENSCHOG00000011084	SECISBP2	83	78.788	Choloepus_hoffmanni
ENSRNOG00000013773	Secisbp2	53	52.601	ENSCPBG00000005608	SECISBP2	99	52.805	Chrysemys_picta_bellii
ENSRNOG00000013773	Secisbp2	100	66.240	ENSCANG00000034551	SECISBP2	100	70.633	Colobus_angolensis_palliatus
ENSRNOG00000013773	Secisbp2	100	83.275	ENSCGRG00001013930	Secisbp2	100	83.275	Cricetulus_griseus_chok1gshd
ENSRNOG00000013773	Secisbp2	100	83.392	ENSCGRG00000002600	Secisbp2	100	83.392	Cricetulus_griseus_crigri
ENSRNOG00000013773	Secisbp2	52	48.240	ENSCVAG00000015876	secisbp2	60	48.832	Cyprinodon_variegatus
ENSRNOG00000013773	Secisbp2	54	48.554	ENSDARG00000073892	secisbp2	85	48.760	Danio_rerio
ENSRNOG00000013773	Secisbp2	100	68.409	ENSDNOG00000009432	SECISBP2	100	68.990	Dasypus_novemcinctus
ENSRNOG00000013773	Secisbp2	100	72.547	ENSDORG00000023182	Secisbp2	100	72.547	Dipodomys_ordii
ENSRNOG00000013773	Secisbp2	92	75.758	ENSETEG00000001262	SECISBP2	92	75.758	Echinops_telfairi
ENSRNOG00000013773	Secisbp2	100	69.312	ENSEASG00005013960	SECISBP2	100	69.312	Equus_asinus_asinus
ENSRNOG00000013773	Secisbp2	100	69.428	ENSECAG00000015868	SECISBP2	100	69.428	Equus_caballus
ENSRNOG00000013773	Secisbp2	100	60.889	ENSEEUG00000004400	SECISBP2	100	62.791	Erinaceus_europaeus
ENSRNOG00000013773	Secisbp2	100	66.744	ENSFCAG00000004214	SECISBP2	100	67.445	Felis_catus
ENSRNOG00000013773	Secisbp2	54	52.591	ENSFALG00000012441	SECISBP2	56	52.224	Ficedula_albicollis
ENSRNOG00000013773	Secisbp2	100	70.327	ENSFDAG00000021183	SECISBP2	96	70.678	Fukomys_damarensis
ENSRNOG00000013773	Secisbp2	52	45.491	ENSFHEG00000004095	secisbp2	62	45.070	Fundulus_heteroclitus
ENSRNOG00000013773	Secisbp2	99	40.085	ENSGALG00000010694	SECISBP2	96	40.106	Gallus_gallus
ENSRNOG00000013773	Secisbp2	52	46.914	ENSGAFG00000016947	secisbp2	60	46.154	Gambusia_affinis
ENSRNOG00000013773	Secisbp2	53	50.108	ENSGACG00000013757	secisbp2	75	49.892	Gasterosteus_aculeatus
ENSRNOG00000013773	Secisbp2	100	72.261	ENSGGOG00000000453	SECISBP2	100	72.261	Gorilla_gorilla
ENSRNOG00000013773	Secisbp2	100	71.729	ENSHGLG00000014380	SECISBP2	96	72.079	Heterocephalus_glaber_female
ENSRNOG00000013773	Secisbp2	100	71.612	ENSHGLG00100006953	SECISBP2	96	71.963	Heterocephalus_glaber_male
ENSRNOG00000013773	Secisbp2	53	46.964	ENSIPUG00000015393	secisbp2	61	46.964	Ictalurus_punctatus
ENSRNOG00000013773	Secisbp2	100	73.512	ENSSTOG00000000921	SECISBP2	100	72.960	Ictidomys_tridecemlineatus
ENSRNOG00000013773	Secisbp2	100	72.125	ENSJJAG00000020492	Secisbp2	100	72.125	Jaculus_jaculus
ENSRNOG00000013773	Secisbp2	53	48.247	ENSKMAG00000007129	secisbp2	64	48.660	Kryptolebias_marmoratus
ENSRNOG00000013773	Secisbp2	53	49.393	ENSLBEG00000026023	secisbp2	84	40.941	Labrus_bergylta
ENSRNOG00000013773	Secisbp2	52	53.361	ENSLACG00000005735	SECISBP2	89	52.807	Latimeria_chalumnae
ENSRNOG00000013773	Secisbp2	52	50.107	ENSLOCG00000011742	secisbp2	79	50.107	Lepisosteus_oculatus
ENSRNOG00000013773	Secisbp2	100	65.701	ENSLAFG00000012998	SECISBP2	100	66.165	Loxodonta_africana
ENSRNOG00000013773	Secisbp2	100	72.177	ENSMFAG00000003045	SECISBP2	100	72.177	Macaca_fascicularis
ENSRNOG00000013773	Secisbp2	100	72.177	ENSMMUG00000012532	SECISBP2	100	72.177	Macaca_mulatta
ENSRNOG00000013773	Secisbp2	100	72.177	ENSMNEG00000031737	SECISBP2	100	72.177	Macaca_nemestrina
ENSRNOG00000013773	Secisbp2	100	66.705	ENSMLEG00000028868	SECISBP2	100	71.266	Mandrillus_leucophaeus
ENSRNOG00000013773	Secisbp2	53	46.108	ENSMAMG00000006644	secisbp2	84	39.503	Mastacembelus_armatus
ENSRNOG00000013773	Secisbp2	53	48.770	ENSMZEG00005013614	secisbp2	60	49.064	Maylandia_zebra
ENSRNOG00000013773	Secisbp2	100	82.901	ENSMAUG00000008659	Secisbp2	100	82.901	Mesocricetus_auratus
ENSRNOG00000013773	Secisbp2	100	72.028	ENSMICG00000001176	SECISBP2	100	72.378	Microcebus_murinus
ENSRNOG00000013773	Secisbp2	100	86.768	ENSMOCG00000000616	Secisbp2	100	86.768	Microtus_ochrogaster
ENSRNOG00000013773	Secisbp2	100	53.052	ENSMODG00000013365	SECISBP2	100	52.661	Monodelphis_domestica
ENSRNOG00000013773	Secisbp2	53	47.211	ENSMALG00000004907	secisbp2	85	39.433	Monopterus_albus
ENSRNOG00000013773	Secisbp2	100	91.715	MGP_CAROLIEiJ_G0018518	Secisbp2	100	91.715	Mus_caroli
ENSRNOG00000013773	Secisbp2	100	91.841	ENSMUSG00000035139	Secisbp2	100	91.841	Mus_musculus
ENSRNOG00000013773	Secisbp2	100	91.005	MGP_PahariEiJ_G0019584	Secisbp2	100	91.005	Mus_pahari
ENSRNOG00000013773	Secisbp2	100	91.309	MGP_SPRETEiJ_G0019399	Secisbp2	100	91.309	Mus_spretus
ENSRNOG00000013773	Secisbp2	65	70.144	ENSMPUG00000008495	-	100	69.604	Mustela_putorius_furo
ENSRNOG00000013773	Secisbp2	99	65.738	ENSMLUG00000012348	SECISBP2	99	65.854	Myotis_lucifugus
ENSRNOG00000013773	Secisbp2	100	78.246	ENSNGAG00000002364	Secisbp2	100	78.246	Nannospalax_galili
ENSRNOG00000013773	Secisbp2	53	48.361	ENSNBRG00000022804	secisbp2	60	48.649	Neolamprologus_brichardi
ENSRNOG00000013773	Secisbp2	100	67.133	ENSNLEG00000008739	SECISBP2	100	71.736	Nomascus_leucogenys
ENSRNOG00000013773	Secisbp2	96	59.345	ENSOPRG00000007588	SECISBP2	99	58.738	Ochotona_princeps
ENSRNOG00000013773	Secisbp2	100	71.228	ENSODEG00000000675	SECISBP2	100	71.228	Octodon_degus
ENSRNOG00000013773	Secisbp2	52	52.242	ENSONIG00000016931	secisbp2	96	53.368	Oreochromis_niloticus
ENSRNOG00000013773	Secisbp2	100	72.112	ENSOCUG00000012932	SECISBP2	100	72.611	Oryctolagus_cuniculus
ENSRNOG00000013773	Secisbp2	50	50.218	ENSORLG00000000343	secisbp2	69	50.218	Oryzias_latipes
ENSRNOG00000013773	Secisbp2	50	49.675	ENSORLG00020012878	secisbp2	67	49.675	Oryzias_latipes_hni
ENSRNOG00000013773	Secisbp2	50	50.437	ENSORLG00015004559	secisbp2	61	50.437	Oryzias_latipes_hsok
ENSRNOG00000013773	Secisbp2	53	48.584	ENSOMEG00000008595	secisbp2	63	49.455	Oryzias_melastigma
ENSRNOG00000013773	Secisbp2	100	69.114	ENSOGAG00000000317	SECISBP2	97	69.347	Otolemur_garnettii
ENSRNOG00000013773	Secisbp2	100	67.359	ENSOARG00000007741	SECISBP2	100	67.359	Ovis_aries
ENSRNOG00000013773	Secisbp2	100	72.378	ENSPPAG00000012385	SECISBP2	100	72.378	Pan_paniscus
ENSRNOG00000013773	Secisbp2	100	66.744	ENSPPRG00000023911	SECISBP2	100	67.445	Panthera_pardus
ENSRNOG00000013773	Secisbp2	98	60.710	ENSPTIG00000009781	SECISBP2	99	60.355	Panthera_tigris_altaica
ENSRNOG00000013773	Secisbp2	100	72.028	ENSPTRG00000021094	SECISBP2	100	72.028	Pan_troglodytes
ENSRNOG00000013773	Secisbp2	100	72.177	ENSPANG00000024873	SECISBP2	100	72.177	Papio_anubis
ENSRNOG00000013773	Secisbp2	50	52.036	ENSPKIG00000006499	SECISBP2	51	51.818	Paramormyrops_kingsleyae
ENSRNOG00000013773	Secisbp2	87	43.796	ENSPSIG00000016257	SECISBP2	96	43.309	Pelodiscus_sinensis
ENSRNOG00000013773	Secisbp2	100	86.784	ENSPEMG00000020212	Secisbp2	100	86.784	Peromyscus_maniculatus_bairdii
ENSRNOG00000013773	Secisbp2	100	53.821	ENSPCIG00000010304	SECISBP2	100	53.769	Phascolarctos_cinereus
ENSRNOG00000013773	Secisbp2	52	49.451	ENSPFOG00000008146	secisbp2	74	48.780	Poecilia_formosa
ENSRNOG00000013773	Secisbp2	52	45.287	ENSPMEG00000013702	secisbp2	61	44.628	Poecilia_mexicana
ENSRNOG00000013773	Secisbp2	52	45.902	ENSPREG00000008117	secisbp2	62	44.928	Poecilia_reticulata
ENSRNOG00000013773	Secisbp2	100	71.795	ENSPPYG00000019359	SECISBP2	100	71.795	Pongo_abelii
ENSRNOG00000013773	Secisbp2	78	58.936	ENSPCAG00000000559	-	80	58.936	Procavia_capensis
ENSRNOG00000013773	Secisbp2	100	72.028	ENSPCOG00000013354	SECISBP2	100	72.378	Propithecus_coquereli
ENSRNOG00000013773	Secisbp2	93	70.787	ENSPVAG00000011013	SECISBP2	90	70.787	Pteropus_vampyrus
ENSRNOG00000013773	Secisbp2	53	48.770	ENSPNYG00000016799	secisbp2	60	49.064	Pundamilia_nyererei
ENSRNOG00000013773	Secisbp2	52	46.356	ENSPNAG00000029922	secisbp2	65	46.356	Pygocentrus_nattereri
ENSRNOG00000013773	Secisbp2	100	72.125	ENSRBIG00000044115	SECISBP2	100	72.125	Rhinopithecus_bieti
ENSRNOG00000013773	Secisbp2	100	72.125	ENSRROG00000030742	SECISBP2	100	72.125	Rhinopithecus_roxellana
ENSRNOG00000013773	Secisbp2	80	80.730	ENSSBOG00000015392	SECISBP2	90	80.730	Saimiri_boliviensis_boliviensis
ENSRNOG00000013773	Secisbp2	100	55.708	ENSSHAG00000005947	SECISBP2	100	55.758	Sarcophilus_harrisii
ENSRNOG00000013773	Secisbp2	54	47.601	ENSSFOG00015010409	secisbp2	61	46.780	Scleropages_formosus
ENSRNOG00000013773	Secisbp2	54	47.732	ENSSMAG00000008472	secisbp2	84	40.420	Scophthalmus_maximus
ENSRNOG00000013773	Secisbp2	53	47.976	ENSSDUG00000002089	secisbp2	61	48.312	Seriola_dumerili
ENSRNOG00000013773	Secisbp2	53	47.976	ENSSLDG00000003510	secisbp2	61	47.976	Seriola_lalandi_dorsalis
ENSRNOG00000013773	Secisbp2	74	97.260	ENSSARG00000012518	-	75	97.260	Sorex_araneus
ENSRNOG00000013773	Secisbp2	88	42.656	ENSSPUG00000009635	SECISBP2	99	41.184	Sphenodon_punctatus
ENSRNOG00000013773	Secisbp2	53	49.091	ENSSPAG00000013606	secisbp2	61	49.091	Stegastes_partitus
ENSRNOG00000013773	Secisbp2	100	68.512	ENSSSCG00000028033	SECISBP2	100	68.627	Sus_scrofa
ENSRNOG00000013773	Secisbp2	58	56.313	ENSTGUG00000000440	SECISBP2	86	56.900	Taeniopygia_guttata
ENSRNOG00000013773	Secisbp2	53	46.169	ENSTRUG00000016835	secisbp2	67	45.565	Takifugu_rubripes
ENSRNOG00000013773	Secisbp2	55	48.665	ENSTNIG00000015576	secisbp2	94	50.652	Tetraodon_nigroviridis
ENSRNOG00000013773	Secisbp2	76	82.979	ENSTBEG00000000288	SECISBP2	77	82.979	Tupaia_belangeri
ENSRNOG00000013773	Secisbp2	100	67.681	ENSTTRG00000003339	SECISBP2	98	68.033	Tursiops_truncatus
ENSRNOG00000013773	Secisbp2	100	66.744	ENSUAMG00000016243	SECISBP2	100	66.744	Ursus_americanus
ENSRNOG00000013773	Secisbp2	98	65.403	ENSUMAG00000016261	SECISBP2	99	65.799	Ursus_maritimus
ENSRNOG00000013773	Secisbp2	98	66.234	ENSVVUG00000022278	SECISBP2	99	66.234	Vulpes_vulpes
ENSRNOG00000013773	Secisbp2	55	53.002	ENSXETG00000029955	SECISBP2	85	53.125	Xenopus_tropicalis
ENSRNOG00000013773	Secisbp2	52	45.902	ENSXMAG00000003090	secisbp2	61	44.835	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001514	selenocysteine incorporation	21873635.	IBA	Process
GO:0001514	selenocysteine incorporation	-	IEA	Process
GO:0001514	selenocysteine incorporation	-	ISO	Process
GO:0001514	selenocysteine incorporation	11238886.	TAS	Process
GO:0003723	RNA binding	10637234.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	21873635.	IBA	Function
GO:0003730	mRNA 3'-UTR binding	11238886.	IDA	Function
GO:0003730	mRNA 3'-UTR binding	-	IEA	Function
GO:0003730	mRNA 3'-UTR binding	-	ISO	Function
GO:0005634	nucleus	-	IEA	Component
GO:0005829	cytosol	-	TAS	Component
GO:0008135	translation factor activity, RNA binding	11238886.	TAS	Function
GO:0021756	striatum development	-	IEA	Process
GO:0021756	striatum development	-	ISO	Process
GO:0035368	selenocysteine insertion sequence binding	21873635.	IBA	Function
GO:0035368	selenocysteine insertion sequence binding	15821744.	IDA	Function
GO:0035368	selenocysteine insertion sequence binding	-	IEA	Function
GO:0035368	selenocysteine insertion sequence binding	-	ISO	Function
GO:0043021	ribonucleoprotein complex binding	21873635.	IBA	Function
GO:0043021	ribonucleoprotein complex binding	-	IEA	Function
GO:0043021	ribonucleoprotein complex binding	-	ISO	Function
GO:0048666	neuron development	-	IEA	Process
GO:0048666	neuron development	-	ISO	Process
GO:1904571	positive regulation of selenocysteine incorporation	15821744.	IDA	Process
GO:1990904	ribonucleoprotein complex	21873635.	IBA	Component
GO:1990904	ribonucleoprotein complex	-	IEA	Component
GO:1990904	ribonucleoprotein complex	-	ISO	Component
GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	IEA	Process
GO:2000623	negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	-	ISO	Process