EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000013907 (Gene tree)
Gene ID
307740
Gene Symbol
Sall1
Alias
LOC307740
Full Name
spalt-like transcription factor 1
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
15665 bases
Position
chr19:23389375-23405039
Accession
1309916
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3516
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3526
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3536
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3546
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3556
ENSRNOP00000018628zf-C2H2PF00096.265.6e-3566
ENSRNOP00000018628zf-metPF12874.72.3e-2414
ENSRNOP00000018628zf-metPF12874.72.3e-2424
ENSRNOP00000018628zf-metPF12874.72.3e-2434
ENSRNOP00000018628zf-metPF12874.72.3e-2444
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000018629-5201XM_006255259ENSRNOP000000186281315 (aa)XP_006255321D3ZIF4
Gene Model
Click here to download ENSRNOG00000013907's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000013907's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSRNOG00000013907Sall15646.429ENSRNOG00000025937Zfp267546.429
ENSRNOG00000013907Sall16045.652ENSRNOG00000061533AABR07001926.38245.652
ENSRNOG00000013907Sall15851.064ENSRNOG00000032625AC118165.110051.064
ENSRNOG00000013907Sall18656.186ENSRNOG00000026116Sall39757.179
ENSRNOG00000013907Sall19953.234ENSRNOG00000050035Sall410053.234
ENSRNOG00000013907Sall15643.077ENSRNOG00000049259LOC1025498429143.077
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000013907Sall110089.970ENSG00000103449SALL110089.894Homo_sapiens
ENSRNOG00000013907Sall110068.015ENSAPOG00000022764sall1a9967.940Acanthochromis_polyacanthus
ENSRNOG00000013907Sall110089.074ENSAMEG00000006817SALL110088.923Ailuropoda_melanoleuca
ENSRNOG00000013907Sall110066.242ENSACIG00000004231sall1a10066.267Amphilophus_citrinellus
ENSRNOG00000013907Sall110067.916ENSAOCG00000002800sall1a9967.841Amphiprion_ocellaris
ENSRNOG00000013907Sall110067.916ENSAPEG00000010179sall1a9967.841Amphiprion_percula
ENSRNOG00000013907Sall110067.065ENSATEG00000003006sall1a10066.962Anabas_testudineus
ENSRNOG00000013907Sall110083.523ENSAPLG00000003356SALL19983.359Anas_platyrhynchos
ENSRNOG00000013907Sall19979.862ENSACAG00000014399SALL19779.556Anolis_carolinensis
ENSRNOG00000013907Sall110090.483ENSANAG00000027238SALL110090.332Aotus_nancymaae
ENSRNOG00000013907Sall110066.517ENSACLG00000017148sall1a9966.517Astatotilapia_calliptera
ENSRNOG00000013907Sall19951.221ENSAMXG00000017702sall1b9951.218Astyanax_mexicanus
ENSRNOG00000013907Sall110068.039ENSAMXG00000018599sall1a9968.042Astyanax_mexicanus
ENSRNOG00000013907Sall110088.872ENSBTAG00000008544SALL110088.855Bos_taurus
ENSRNOG00000013907Sall110090.332ENSCJAG00000001740SALL110090.257Callithrix_jacchus
ENSRNOG00000013907Sall110088.302ENSCAFG00000009755SALL110089.132Canis_familiaris
ENSRNOG00000013907Sall110088.302ENSCAFG00020002842SALL110089.132Canis_lupus_dingo
ENSRNOG00000013907Sall110088.502ENSCHIG00000026074SALL110088.409Capra_hircus
ENSRNOG00000013907Sall110091.199ENSTSYG00000029464SALL110090.895Carlito_syrichta
ENSRNOG00000013907Sall19890.944ENSCPOG00000006564SALL110090.635Cavia_porcellus
ENSRNOG00000013907Sall110087.746ENSCCAG00000001639SALL110087.519Cebus_capucinus
ENSRNOG00000013907Sall110090.840ENSCATG00000004982SALL110090.689Cercocebus_atys
ENSRNOG00000013907Sall110090.895ENSCLAG00000006380SALL110090.516Chinchilla_lanigera
ENSRNOG00000013907Sall110089.569ENSCSAG00000005319SALL110089.569Chlorocebus_sabaeus
ENSRNOG00000013907Sall16493.281ENSCHOG00000000800-6993.281Choloepus_hoffmanni
ENSRNOG00000013907Sall110083.979ENSCPBG00000015924SALL110083.751Chrysemys_picta_bellii
ENSRNOG00000013907Sall110090.833ENSCANG00000036664SALL110090.606Colobus_angolensis_palliatus
ENSRNOG00000013907Sall110092.646ENSCGRG00001023314-10092.343Cricetulus_griseus_chok1gshd
ENSRNOG00000013907Sall19892.498ENSCGRG00000009496Sall110092.189Cricetulus_griseus_crigri
ENSRNOG00000013907Sall110065.302ENSCSEG00000009349sall1a10065.648Cynoglossus_semilaevis
ENSRNOG00000013907Sall19065.993ENSCVAG00000020513sall1a9965.825Cyprinodon_variegatus
ENSRNOG00000013907Sall110067.290ENSDARG00000074319sall1a10067.116Danio_rerio
ENSRNOG00000013907Sall19946.662ENSDARG00000075891sall1b9945.924Danio_rerio
ENSRNOG00000013907Sall110089.310ENSDNOG00000016413SALL110089.310Dasypus_novemcinctus
ENSRNOG00000013907Sall19888.777ENSETEG00000015150SALL110088.545Echinops_telfairi
ENSRNOG00000013907Sall16942.431ENSEBUG00000008798SALL19936.896Eptatretus_burgeri
ENSRNOG00000013907Sall19065.385ENSEBUG00000011732SALL19765.385Eptatretus_burgeri
ENSRNOG00000013907Sall110090.592ENSEASG00005014602SALL110090.516Equus_asinus_asinus
ENSRNOG00000013907Sall19188.442ENSECAG00000011334SALL19988.358Equus_caballus
ENSRNOG00000013907Sall19888.966ENSEEUG00000002014SALL110087.876Erinaceus_europaeus
ENSRNOG00000013907Sall19951.194ENSELUG00000017774-9950.593Esox_lucius
ENSRNOG00000013907Sall110063.828ENSELUG00000006159sall1a10064.099Esox_lucius
ENSRNOG00000013907Sall110088.788ENSFCAG00000024654SALL110088.789Felis_catus
ENSRNOG00000013907Sall110082.764ENSFALG00000000074SALL19982.599Ficedula_albicollis
ENSRNOG00000013907Sall110066.892ENSFHEG00000012579sall1a10066.817Fundulus_heteroclitus
ENSRNOG00000013907Sall17763.462ENSFHEG00000008424-9961.538Fundulus_heteroclitus
ENSRNOG00000013907Sall110065.030ENSGMOG00000006103sall1a9964.824Gadus_morhua
ENSRNOG00000013907Sall18643.367ENSGMOG00000013383-9941.617Gadus_morhua
ENSRNOG00000013907Sall110083.144ENSGALG00000039238SALL19982.979Gallus_gallus
ENSRNOG00000013907Sall110067.065ENSGAFG00000009964sall1a10067.016Gambusia_affinis
ENSRNOG00000013907Sall110066.118ENSGACG00000016702sall1a10066.342Gasterosteus_aculeatus
ENSRNOG00000013907Sall110083.599ENSGAGG00000013979SALL110083.371Gopherus_agassizii
ENSRNOG00000013907Sall110090.196ENSGGOG00000000663SALL110090.045Gorilla_gorilla
ENSRNOG00000013907Sall110066.517ENSHBUG00000022005sall1a9966.517Haplochromis_burtoni
ENSRNOG00000013907Sall110091.502ENSHGLG00000004288-10091.199Heterocephalus_glaber_female
ENSRNOG00000013907Sall110091.502ENSHGLG00100017496SALL110091.199Heterocephalus_glaber_male
ENSRNOG00000013907Sall110065.625ENSHCOG00000000974sall1a9965.195Hippocampus_comes
ENSRNOG00000013907Sall19949.219ENSIPUG00000022928sall1b9948.820Ictalurus_punctatus
ENSRNOG00000013907Sall19968.516ENSIPUG00000016265SALL19968.267Ictalurus_punctatus
ENSRNOG00000013907Sall110090.682ENSSTOG00000020885SALL110090.447Ictidomys_tridecemlineatus
ENSRNOG00000013907Sall110066.267ENSKMAG00000016681sall1a10066.342Kryptolebias_marmoratus
ENSRNOG00000013907Sall19765.925ENSLBEG00000012207sall1a9566.000Labrus_bergylta
ENSRNOG00000013907Sall110077.069ENSLACG00000003556SALL110076.993Latimeria_chalumnae
ENSRNOG00000013907Sall19739.634ENSLACG00000014018-9939.740Latimeria_chalumnae
ENSRNOG00000013907Sall110071.705ENSLOCG00000007283sall1b9971.749Lepisosteus_oculatus
ENSRNOG00000013907Sall19888.631ENSLAFG00000015251SALL110088.399Loxodonta_africana
ENSRNOG00000013907Sall110090.642ENSMFAG00000003298SALL110090.415Macaca_fascicularis
ENSRNOG00000013907Sall19390.628ENSMMUG00000017200SALL110090.302Macaca_mulatta
ENSRNOG00000013907Sall19390.472ENSMNEG00000034770SALL110090.147Macaca_nemestrina
ENSRNOG00000013907Sall110090.985ENSMLEG00000036406SALL110090.758Mandrillus_leucophaeus
ENSRNOG00000013907Sall110067.113ENSMAMG00000004164sall1a10066.890Mastacembelus_armatus
ENSRNOG00000013907Sall110066.366ENSMZEG00005006479sall1a9966.517Maylandia_zebra
ENSRNOG00000013907Sall19883.359ENSMGAG00000004704SALL19983.191Meleagris_gallopavo
ENSRNOG00000013907Sall110092.179ENSMAUG00000019093Sall110091.951Mesocricetus_auratus
ENSRNOG00000013907Sall110089.605ENSMICG00000036486SALL110089.302Microcebus_murinus
ENSRNOG00000013907Sall110066.392ENSMMOG00000016400sall1a10066.492Mola_mola
ENSRNOG00000013907Sall110086.409ENSMODG00000013114SALL110086.333Monodelphis_domestica
ENSRNOG00000013907Sall110067.166ENSMALG00000013400sall1a10067.016Monopterus_albus
ENSRNOG00000013907Sall110095.102MGP_CAROLIEiJ_G0031362Sall110095.102Mus_caroli
ENSRNOG00000013907Sall110094.943ENSMUSG00000031665Sall110094.792Mus_musculus
ENSRNOG00000013907Sall110094.264MGP_PahariEiJ_G0022961Sall110094.189Mus_pahari
ENSRNOG00000013907Sall110095.245MGP_SPRETEiJ_G0032480Sall110095.245Mus_spretus
ENSRNOG00000013907Sall19887.809ENSMPUG00000003265SALL19687.741Mustela_putorius_furo
ENSRNOG00000013907Sall19884.178ENSMLUG00000015541SALL110083.948Myotis_lucifugus
ENSRNOG00000013907Sall110066.592ENSNBRG00000009307sall1a10066.542Neolamprologus_brichardi
ENSRNOG00000013907Sall19496.667ENSNLEG00000001008SALL110096.667Nomascus_leucogenys
ENSRNOG00000013907Sall110086.257ENSMEUG00000012206SALL110085.877Notamacropus_eugenii
ENSRNOG00000013907Sall17791.834ENSOPRG00000005645SALL17591.834Ochotona_princeps
ENSRNOG00000013907Sall110091.123ENSODEG00000003685SALL110090.668Octodon_degus
ENSRNOG00000013907Sall110066.942ENSONIG00000002831sall1a9966.942Oreochromis_niloticus
ENSRNOG00000013907Sall18989.057ENSOANG00000013399SALL19978.875Ornithorhynchus_anatinus
ENSRNOG00000013907Sall110066.766ENSORLG00000013827sall1a10066.542Oryzias_latipes
ENSRNOG00000013907Sall110066.692ENSORLG00020020570sall1a10066.468Oryzias_latipes_hni
ENSRNOG00000013907Sall110066.990ENSORLG00015018830sall1a10066.667Oryzias_latipes_hsok
ENSRNOG00000013907Sall110066.517ENSOMEG00000016043sall1a10066.468Oryzias_melastigma
ENSRNOG00000013907Sall110090.227ENSOGAG00000027316SALL110089.773Otolemur_garnettii
ENSRNOG00000013907Sall110083.057ENSOARG00000017583SALL110083.032Ovis_aries
ENSRNOG00000013907Sall19989.185ENSPPAG00000035657SALL110089.769Pan_paniscus
ENSRNOG00000013907Sall19868.677ENSPPAG00000035136-9968.856Pan_paniscus
ENSRNOG00000013907Sall110088.939ENSPPRG00000023283SALL110088.953Panthera_pardus
ENSRNOG00000013907Sall18494.697ENSPTIG00000013539-9694.697Panthera_tigris_altaica
ENSRNOG00000013907Sall19669.146ENSPTRG00000045256-9869.376Pan_troglodytes
ENSRNOG00000013907Sall110089.759ENSPTRG00000008108SALL110089.872Pan_troglodytes
ENSRNOG00000013907Sall110091.061ENSPANG00000024176SALL110090.833Papio_anubis
ENSRNOG00000013907Sall110065.208ENSPKIG00000005383-10064.777Paramormyrops_kingsleyae
ENSRNOG00000013907Sall110065.740ENSPKIG00000022251sall1a9965.637Paramormyrops_kingsleyae
ENSRNOG00000013907Sall110083.207ENSPSIG00000008582SALL110083.131Pelodiscus_sinensis
ENSRNOG00000013907Sall110064.789ENSPMGG00000021788sall1a10064.941Periophthalmus_magnuspinnatus
ENSRNOG00000013907Sall110086.409ENSPCIG00000017840SALL110086.029Phascolarctos_cinereus
ENSRNOG00000013907Sall19866.794ENSPFOG00000015799sall1a9666.921Poecilia_formosa
ENSRNOG00000013907Sall110067.016ENSPLAG00000022539sall1a10066.991Poecilia_latipinna
ENSRNOG00000013907Sall110067.166ENSPMEG00000020894sall1a10067.016Poecilia_mexicana
ENSRNOG00000013907Sall110067.016ENSPREG00000006802sall1a10066.942Poecilia_reticulata
ENSRNOG00000013907Sall19089.483ENSPPYG00000007345SALL19689.398Pongo_abelii
ENSRNOG00000013907Sall18493.902ENSPCAG00000008162SALL19393.750Procavia_capensis
ENSRNOG00000013907Sall110089.613ENSPCOG00000028192SALL110089.538Propithecus_coquereli
ENSRNOG00000013907Sall17190.070ENSPVAG00000015374SALL110091.005Pteropus_vampyrus
ENSRNOG00000013907Sall110066.592ENSPNYG00000010865sall1a9966.592Pundamilia_nyererei
ENSRNOG00000013907Sall110065.695ENSPNAG00000023644sall1a9965.644Pygocentrus_nattereri
ENSRNOG00000013907Sall19863.462ENSPNAG00000028248-9965.306Pygocentrus_nattereri
ENSRNOG00000013907Sall19953.760ENSPNAG00000007442sall1b9953.760Pygocentrus_nattereri
ENSRNOG00000013907Sall19390.449ENSRBIG00000015707SALL110090.367Rhinopithecus_bieti
ENSRNOG00000013907Sall19989.779ENSRROG00000035777SALL110090.294Rhinopithecus_roxellana
ENSRNOG00000013907Sall110090.491ENSSBOG00000032186SALL110090.415Saimiri_boliviensis_boliviensis
ENSRNOG00000013907Sall110085.270ENSSHAG00000009477SALL110085.270Sarcophilus_harrisii
ENSRNOG00000013907Sall19965.399ENSSFOG00015020020sall1a9965.866Scleropages_formosus
ENSRNOG00000013907Sall19866.210ENSSFOG00015001590sall1a9966.335Scleropages_formosus
ENSRNOG00000013907Sall110067.116ENSSMAG00000009160sall1a10066.966Scophthalmus_maximus
ENSRNOG00000013907Sall19059.184ENSSDUG00000000748sall1b8459.184Seriola_dumerili
ENSRNOG00000013907Sall110067.588ENSSDUG00000006507sall1a10067.438Seriola_dumerili
ENSRNOG00000013907Sall110067.662ENSSLDG00000017721sall1a10067.513Seriola_lalandi_dorsalis
ENSRNOG00000013907Sall19889.352ENSSARG00000000661SALL110089.206Sorex_araneus
ENSRNOG00000013907Sall110083.295ENSSPUG00000000156SALL110083.144Sphenodon_punctatus
ENSRNOG00000013907Sall110067.865ENSSPAG00000021615sall1a9967.790Stegastes_partitus
ENSRNOG00000013907Sall110088.404ENSSSCG00000002836SALL110088.195Sus_scrofa
ENSRNOG00000013907Sall110083.144ENSTGUG00000007514SALL19982.979Taeniopygia_guttata
ENSRNOG00000013907Sall19165.160ENSTRUG00000008950sall1a10065.356Takifugu_rubripes
ENSRNOG00000013907Sall19264.321ENSTNIG00000004257sall1a10064.595Tetraodon_nigroviridis
ENSRNOG00000013907Sall173100.000ENSTBEG00000002119-55100.000Tupaia_belangeri
ENSRNOG00000013907Sall19088.690ENSUAMG00000023379-9288.435Ursus_americanus
ENSRNOG00000013907Sall19087.489ENSVVUG00000019383-9987.828Vulpes_vulpes
ENSRNOG00000013907Sall110073.610ENSXETG00000018417sall110073.314Xenopus_tropicalis
ENSRNOG00000013907Sall17961.538ENSXETG00000017176sall25961.538Xenopus_tropicalis
ENSRNOG00000013907Sall110067.091ENSXMAG00000016273sall1a10066.942Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000122negative regulation of transcription by RNA polymerase II-IEAProcess
GO:0000122negative regulation of transcription by RNA polymerase II-ISOProcess
GO:0000792heterochromatin-IEAComponent
GO:0000792heterochromatin-ISOComponent
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-IEAFunction
GO:0000978RNA polymerase II proximal promoter sequence-specific DNA binding-ISOFunction
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific-ISOFunction
GO:0001085RNA polymerase II transcription factor binding-ISOFunction
GO:0001158enhancer sequence-specific DNA binding-ISOFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific-IEAFunction
GO:0001227DNA-binding transcription repressor activity, RNA polymerase II-specific-ISOFunction
GO:0001657ureteric bud development-ISOProcess
GO:0001658branching involved in ureteric bud morphogenesis-ISOProcess
GO:0001822kidney development-ISOProcess
GO:0001843neural tube closure-ISOProcess
GO:0003281ventricular septum development-ISOProcess
GO:0003337mesenchymal to epithelial transition involved in metanephros morphogenesis-IEAProcess
GO:0003337mesenchymal to epithelial transition involved in metanephros morphogenesis-ISOProcess
GO:0003340negative regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis-ISOProcess
GO:0003674molecular_function-NDFunction
GO:0003677DNA binding-ISOFunction
GO:0003682chromatin binding-ISOFunction
GO:0005575cellular_component-NDComponent
GO:0005634nucleus21873635.IBAComponent
GO:0005634nucleus-ISOComponent
GO:0005737cytoplasm-IEAComponent
GO:0005737cytoplasm-ISOComponent
GO:0006355regulation of transcription, DNA-templated21873635.IBAProcess
GO:0007507heart development-IEAProcess
GO:0007507heart development-ISOProcess
GO:0008013beta-catenin binding-IEAFunction
GO:0008013beta-catenin binding-ISOFunction
GO:0008150biological_process-NDProcess
GO:0008406gonad development-IEAProcess
GO:0008406gonad development-ISOProcess
GO:0010369chromocenter-IEAComponent
GO:0010369chromocenter-ISOComponent
GO:0016581NuRD complex-ISOComponent
GO:0021553olfactory nerve development-ISOProcess
GO:0021772olfactory bulb development-ISOProcess
GO:0021889olfactory bulb interneuron differentiation-ISOProcess
GO:0021915neural tube development-ISOProcess
GO:0021983pituitary gland development-IEAProcess
GO:0021983pituitary gland development-ISOProcess
GO:0030177positive regulation of Wnt signaling pathway-IEAProcess
GO:0030177positive regulation of Wnt signaling pathway-ISOProcess
GO:0030325adrenal gland development-IEAProcess
GO:0030325adrenal gland development-ISOProcess
GO:0031129inductive cell-cell signaling-ISOProcess
GO:0035136forelimb morphogenesis-ISOProcess
GO:0035137hindlimb morphogenesis-ISOProcess
GO:0042473outer ear morphogenesis-IEAProcess
GO:0042473outer ear morphogenesis-ISOProcess
GO:0042733embryonic digit morphogenesis-IEAProcess
GO:0042733embryonic digit morphogenesis-ISOProcess
GO:0044877protein-containing complex binding-ISOFunction
GO:0045666positive regulation of neuron differentiation-ISOProcess
GO:0045879negative regulation of smoothened signaling pathway-ISOProcess
GO:0045892negative regulation of transcription, DNA-templated-ISOProcess
GO:0045893positive regulation of transcription, DNA-templated-ISOProcess
GO:0045944positive regulation of transcription by RNA polymerase II-IEAProcess
GO:0045944positive regulation of transcription by RNA polymerase II-ISOProcess
GO:0048566embryonic digestive tract development-IEAProcess
GO:0048566embryonic digestive tract development-ISOProcess
GO:0060173limb development-ISOProcess
GO:0061034olfactory bulb mitral cell layer development-IEAProcess
GO:0061034olfactory bulb mitral cell layer development-ISOProcess
GO:0072073kidney epithelium development-ISOProcess
GO:0072092ureteric bud invasion-ISOProcess
GO:0072309mesenchymal stem cell maintenance involved in metanephric nephron morphogenesis-ISOProcess
GO:0090190positive regulation of branching involved in ureteric bud morphogenesis-ISOProcess
GO:2000177regulation of neural precursor cell proliferation-ISOProcess
GO:2000381negative regulation of mesoderm development-ISOProcess
GO:2000384negative regulation of ectoderm development-ISOProcess

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