EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014049 (Gene tree)
Gene ID: 291061
Gene Symbol: Riok1
Alias: LOC291061
Full Name: RIO kinase 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 22899 bases
Position: chr17:27429416-27452314
Accession: 1306086
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073468	RIO1	PF01163.22	7.9e-76	1	1
ENSRNOP00000018936	RIO1	PF01163.22	1.2e-75	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000018936	-	2079	-	ENSRNOP00000018936	566 (aa)	-	G3V7T0
ENSRNOT00000084417	-	2505	XM_006253789	ENSRNOP00000073468	464 (aa)	XP_006253851	A0A0G2K5L3

Gene Model

Click here to download ENSRNOG00000014049's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014049's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014049	Riok1	64	42.857	ENSRNOG00000023376	Riok3	58	42.857

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014049	Riok1	100	87.284	ENSG00000124784	RIOK1	99	81.851	Homo_sapiens
ENSRNOG00000014049	Riok1	70	69.136	ENSAPOG00000015632	riok1	99	69.136	Acanthochromis_polyacanthus
ENSRNOG00000014049	Riok1	100	87.069	ENSAMEG00000017367	RIOK1	99	81.317	Ailuropoda_melanoleuca
ENSRNOG00000014049	Riok1	99	72.138	ENSACIG00000003735	riok1	93	66.857	Amphilophus_citrinellus
ENSRNOG00000014049	Riok1	99	72.786	ENSAOCG00000011818	riok1	100	66.370	Amphiprion_ocellaris
ENSRNOG00000014049	Riok1	99	72.570	ENSAPEG00000001345	riok1	100	66.489	Amphiprion_percula
ENSRNOG00000014049	Riok1	99	69.978	ENSATEG00000006594	riok1	99	69.978	Anabas_testudineus
ENSRNOG00000014049	Riok1	100	78.085	ENSAPLG00000004196	RIOK1	100	78.631	Anas_platyrhynchos
ENSRNOG00000014049	Riok1	100	81.075	ENSACAG00000000695	RIOK1	100	73.286	Anolis_carolinensis
ENSRNOG00000014049	Riok1	100	74.569	ENSANAG00000023777	RIOK1	99	71.786	Aotus_nancymaae
ENSRNOG00000014049	Riok1	99	73.002	ENSACLG00000015799	riok1	99	65.591	Astatotilapia_calliptera
ENSRNOG00000014049	Riok1	100	73.978	ENSAMXG00000015286	riok1	99	66.838	Astyanax_mexicanus
ENSRNOG00000014049	Riok1	100	86.422	ENSBTAG00000013821	RIOK1	99	80.036	Bos_taurus
ENSRNOG00000014049	Riok1	95	46.018	WBGene00019698	riok-1	85	46.421	Caenorhabditis_elegans
ENSRNOG00000014049	Riok1	100	86.207	ENSCJAG00000042960	RIOK1	99	81.429	Callithrix_jacchus
ENSRNOG00000014049	Riok1	100	87.284	ENSCAFG00000009563	RIOK1	99	81.495	Canis_familiaris
ENSRNOG00000014049	Riok1	95	84.424	ENSCAFG00020013233	RIOK1	95	79.887	Canis_lupus_dingo
ENSRNOG00000014049	Riok1	100	85.129	ENSCHIG00000001534	RIOK1	99	79.323	Capra_hircus
ENSRNOG00000014049	Riok1	81	84.881	ENSTSYG00000011368	RIOK1	100	88.991	Carlito_syrichta
ENSRNOG00000014049	Riok1	97	82.889	ENSCAPG00000008489	RIOK1	100	83.190	Cavia_aperea
ENSRNOG00000014049	Riok1	97	84.444	ENSCPOG00000009882	RIOK1	99	78.546	Cavia_porcellus
ENSRNOG00000014049	Riok1	100	86.638	ENSCCAG00000024061	RIOK1	99	81.964	Cebus_capucinus
ENSRNOG00000014049	Riok1	100	86.638	ENSCATG00000001548	RIOK1	99	82.143	Cercocebus_atys
ENSRNOG00000014049	Riok1	100	87.500	ENSCLAG00000003522	RIOK1	99	82.593	Chinchilla_lanigera
ENSRNOG00000014049	Riok1	92	85.047	ENSCSAG00000007396	RIOK1	97	80.725	Chlorocebus_sabaeus
ENSRNOG00000014049	Riok1	78	87.179	ENSCHOG00000001873	RIOK1	84	70.740	Choloepus_hoffmanni
ENSRNOG00000014049	Riok1	83	84.856	ENSCPBG00000008685	RIOK1	90	73.423	Chrysemys_picta_bellii
ENSRNOG00000014049	Riok1	100	86.638	ENSCANG00000032919	RIOK1	99	81.964	Colobus_angolensis_palliatus
ENSRNOG00000014049	Riok1	100	93.966	ENSCGRG00001018868	Riok1	100	90.636	Cricetulus_griseus_chok1gshd
ENSRNOG00000014049	Riok1	100	93.966	ENSCGRG00000008015	Riok1	100	90.636	Cricetulus_griseus_crigri
ENSRNOG00000014049	Riok1	99	50.753	ENSCSEG00000015014	riok1	96	47.985	Cynoglossus_semilaevis
ENSRNOG00000014049	Riok1	70	64.742	ENSCVAG00000011291	riok1	99	64.742	Cyprinodon_variegatus
ENSRNOG00000014049	Riok1	100	72.414	ENSDARG00000016399	riok1	100	67.788	Danio_rerio
ENSRNOG00000014049	Riok1	100	85.837	ENSDNOG00000015813	RIOK1	99	79.894	Dasypus_novemcinctus
ENSRNOG00000014049	Riok1	100	86.638	ENSDORG00000008530	Riok1	99	82.092	Dipodomys_ordii
ENSRNOG00000014049	Riok1	95	51.236	FBgn0036187	RIOK1	91	47.681	Drosophila_melanogaster
ENSRNOG00000014049	Riok1	100	83.621	ENSETEG00000020273	RIOK1	99	78.175	Echinops_telfairi
ENSRNOG00000014049	Riok1	99	66.091	ENSEBUG00000013672	riok1	99	59.858	Eptatretus_burgeri
ENSRNOG00000014049	Riok1	92	84.579	ENSEASG00005012032	RIOK1	93	80.038	Equus_asinus_asinus
ENSRNOG00000014049	Riok1	100	85.345	ENSECAG00000009007	RIOK1	99	80.961	Equus_caballus
ENSRNOG00000014049	Riok1	92	69.860	ENSEEUG00000007123	RIOK1	100	70.000	Erinaceus_europaeus
ENSRNOG00000014049	Riok1	100	71.552	ENSELUG00000017029	riok1	99	64.956	Esox_lucius
ENSRNOG00000014049	Riok1	100	87.069	ENSFCAG00000027290	RIOK1	99	80.742	Felis_catus
ENSRNOG00000014049	Riok1	100	79.957	ENSFALG00000013244	RIOK1	99	73.982	Ficedula_albicollis
ENSRNOG00000014049	Riok1	100	86.638	ENSFDAG00000019139	RIOK1	99	81.851	Fukomys_damarensis
ENSRNOG00000014049	Riok1	77	76.602	ENSFHEG00000021419	riok1	98	68.736	Fundulus_heteroclitus
ENSRNOG00000014049	Riok1	81	71.618	ENSGMOG00000018668	riok1	99	65.899	Gadus_morhua
ENSRNOG00000014049	Riok1	70	74.174	ENSGALG00000012795	RIOK1	100	78.327	Gallus_gallus
ENSRNOG00000014049	Riok1	99	58.531	ENSGAFG00000004091	riok1	79	58.910	Gambusia_affinis
ENSRNOG00000014049	Riok1	97	72.829	ENSGACG00000002496	riok1	98	69.320	Gasterosteus_aculeatus
ENSRNOG00000014049	Riok1	81	84.392	ENSGAGG00000002262	RIOK1	91	81.265	Gopherus_agassizii
ENSRNOG00000014049	Riok1	87	87.625	ENSGGOG00000011037	RIOK1	99	83.810	Gorilla_gorilla
ENSRNOG00000014049	Riok1	100	83.190	ENSHGLG00000008699	RIOK1	99	78.826	Heterocephalus_glaber_female
ENSRNOG00000014049	Riok1	100	83.190	ENSHGLG00100008188	RIOK1	99	78.826	Heterocephalus_glaber_male
ENSRNOG00000014049	Riok1	99	70.043	ENSHCOG00000013275	riok1	95	66.346	Hippocampus_comes
ENSRNOG00000014049	Riok1	100	74.359	ENSIPUG00000003290	riok1	100	66.782	Ictalurus_punctatus
ENSRNOG00000014049	Riok1	100	87.069	ENSSTOG00000009289	RIOK1	99	82.593	Ictidomys_tridecemlineatus
ENSRNOG00000014049	Riok1	100	85.560	ENSJJAG00000015152	Riok1	99	81.139	Jaculus_jaculus
ENSRNOG00000014049	Riok1	81	74.468	ENSKMAG00000019378	riok1	99	72.751	Kryptolebias_marmoratus
ENSRNOG00000014049	Riok1	99	71.490	ENSLBEG00000016650	riok1	92	68.061	Labrus_bergylta
ENSRNOG00000014049	Riok1	100	71.121	ENSLACG00000000300	RIOK1	100	64.706	Latimeria_chalumnae
ENSRNOG00000014049	Riok1	100	75.431	ENSLOCG00000011728	riok1	100	68.293	Lepisosteus_oculatus
ENSRNOG00000014049	Riok1	100	86.422	ENSLAFG00000005504	RIOK1	99	80.832	Loxodonta_africana
ENSRNOG00000014049	Riok1	100	86.422	ENSMFAG00000029990	RIOK1	99	81.964	Macaca_fascicularis
ENSRNOG00000014049	Riok1	100	86.207	ENSMMUG00000015577	RIOK1	99	81.786	Macaca_mulatta
ENSRNOG00000014049	Riok1	100	82.543	ENSMNEG00000034396	RIOK1	97	80.702	Macaca_nemestrina
ENSRNOG00000014049	Riok1	100	86.853	ENSMLEG00000026327	RIOK1	99	82.143	Mandrillus_leucophaeus
ENSRNOG00000014049	Riok1	99	72.570	ENSMAMG00000019557	riok1	99	65.954	Mastacembelus_armatus
ENSRNOG00000014049	Riok1	99	72.786	ENSMZEG00005019482	riok1	99	65.295	Maylandia_zebra
ENSRNOG00000014049	Riok1	100	77.778	ENSMGAG00000003816	RIOK1	100	71.754	Meleagris_gallopavo
ENSRNOG00000014049	Riok1	100	94.612	ENSMAUG00000012751	Riok1	100	90.636	Mesocricetus_auratus
ENSRNOG00000014049	Riok1	100	86.638	ENSMICG00000044301	RIOK1	83	81.640	Microcebus_murinus
ENSRNOG00000014049	Riok1	100	91.595	ENSMOCG00000017032	Riok1	100	89.046	Microtus_ochrogaster
ENSRNOG00000014049	Riok1	99	61.895	ENSMMOG00000020598	riok1	87	61.538	Mola_mola
ENSRNOG00000014049	Riok1	100	79.741	ENSMODG00000009964	RIOK1	99	72.134	Monodelphis_domestica
ENSRNOG00000014049	Riok1	99	66.091	ENSMALG00000019982	riok1	96	61.850	Monopterus_albus
ENSRNOG00000014049	Riok1	100	95.690	MGP_CAROLIEiJ_G0018439	Riok1	100	92.933	Mus_caroli
ENSRNOG00000014049	Riok1	100	94.828	ENSMUSG00000021428	Riok1	100	91.887	Mus_musculus
ENSRNOG00000014049	Riok1	100	95.043	MGP_PahariEiJ_G0019507	Riok1	100	92.933	Mus_pahari
ENSRNOG00000014049	Riok1	100	95.043	MGP_SPRETEiJ_G0019319	Riok1	100	92.226	Mus_spretus
ENSRNOG00000014049	Riok1	100	85.776	ENSMPUG00000000570	RIOK1	99	79.610	Mustela_putorius_furo
ENSRNOG00000014049	Riok1	100	85.991	ENSMLUG00000015312	RIOK1	99	81.172	Myotis_lucifugus
ENSRNOG00000014049	Riok1	100	89.009	ENSNGAG00000021734	Riok1	99	84.794	Nannospalax_galili
ENSRNOG00000014049	Riok1	83	77.662	ENSNBRG00000017489	riok1	83	70.337	Neolamprologus_brichardi
ENSRNOG00000014049	Riok1	100	76.724	ENSNLEG00000011621	RIOK1	99	72.954	Nomascus_leucogenys
ENSRNOG00000014049	Riok1	100	50.862	ENSMEUG00000006679	-	84	52.731	Notamacropus_eugenii
ENSRNOG00000014049	Riok1	77	78.830	ENSOPRG00000009524	RIOK1	100	78.706	Ochotona_princeps
ENSRNOG00000014049	Riok1	69	68.448	ENSODEG00000005663	RIOK1	98	69.543	Octodon_degus
ENSRNOG00000014049	Riok1	99	72.570	ENSONIG00000014010	riok1	99	64.602	Oreochromis_niloticus
ENSRNOG00000014049	Riok1	100	81.897	ENSOANG00000012553	RIOK1	100	81.897	Ornithorhynchus_anatinus
ENSRNOG00000014049	Riok1	100	85.991	ENSOCUG00000011824	RIOK1	99	78.292	Oryctolagus_cuniculus
ENSRNOG00000014049	Riok1	99	73.002	ENSORLG00000008221	riok1	99	65.658	Oryzias_latipes
ENSRNOG00000014049	Riok1	99	70.065	ENSORLG00020013838	riok1	70	64.758	Oryzias_latipes_hni
ENSRNOG00000014049	Riok1	99	71.922	ENSORLG00015009817	riok1	100	65.674	Oryzias_latipes_hsok
ENSRNOG00000014049	Riok1	99	71.706	ENSOMEG00000002758	riok1	89	66.068	Oryzias_melastigma
ENSRNOG00000014049	Riok1	100	75.751	ENSOGAG00000010192	RIOK1	99	71.681	Otolemur_garnettii
ENSRNOG00000014049	Riok1	100	85.560	ENSOARG00000017747	RIOK1	99	79.323	Ovis_aries
ENSRNOG00000014049	Riok1	100	77.634	ENSPPAG00000016349	RIOK1	100	84.404	Pan_paniscus
ENSRNOG00000014049	Riok1	100	86.638	ENSPPRG00000001932	RIOK1	99	80.742	Panthera_pardus
ENSRNOG00000014049	Riok1	100	86.853	ENSPTIG00000018545	RIOK1	99	81.095	Panthera_tigris_altaica
ENSRNOG00000014049	Riok1	100	87.069	ENSPTRG00000017700	RIOK1	99	81.673	Pan_troglodytes
ENSRNOG00000014049	Riok1	100	86.638	ENSPANG00000016522	RIOK1	99	82.143	Papio_anubis
ENSRNOG00000014049	Riok1	100	73.491	ENSPKIG00000006442	riok1	91	70.254	Paramormyrops_kingsleyae
ENSRNOG00000014049	Riok1	100	81.034	ENSPSIG00000006488	RIOK1	97	75.357	Pelodiscus_sinensis
ENSRNOG00000014049	Riok1	81	72.632	ENSPMGG00000017807	riok1	96	67.680	Periophthalmus_magnuspinnatus
ENSRNOG00000014049	Riok1	100	93.534	ENSPEMG00000017844	Riok1	100	91.519	Peromyscus_maniculatus_bairdii
ENSRNOG00000014049	Riok1	67	78.317	ENSPMAG00000006351	riok1	85	73.333	Petromyzon_marinus
ENSRNOG00000014049	Riok1	92	79.439	ENSPCIG00000012653	RIOK1	93	72.814	Phascolarctos_cinereus
ENSRNOG00000014049	Riok1	99	66.955	ENSPFOG00000011532	riok1	99	63.063	Poecilia_formosa
ENSRNOG00000014049	Riok1	99	66.955	ENSPLAG00000001341	riok1	93	65.370	Poecilia_latipinna
ENSRNOG00000014049	Riok1	99	66.955	ENSPMEG00000007710	riok1	99	63.063	Poecilia_mexicana
ENSRNOG00000014049	Riok1	99	68.534	ENSPREG00000009237	riok1	93	64.410	Poecilia_reticulata
ENSRNOG00000014049	Riok1	100	87.500	ENSPPYG00000016207	RIOK1	99	82.060	Pongo_abelii
ENSRNOG00000014049	Riok1	100	74.138	ENSPCAG00000007892	RIOK1	100	69.435	Procavia_capensis
ENSRNOG00000014049	Riok1	100	87.284	ENSPVAG00000014091	RIOK1	100	80.594	Pteropus_vampyrus
ENSRNOG00000014049	Riok1	70	70.948	ENSPNYG00000004465	riok1	100	70.948	Pundamilia_nyererei
ENSRNOG00000014049	Riok1	100	74.569	ENSPNAG00000015435	riok1	99	67.776	Pygocentrus_nattereri
ENSRNOG00000014049	Riok1	100	86.422	ENSRBIG00000036685	RIOK1	99	81.429	Rhinopithecus_bieti
ENSRNOG00000014049	Riok1	100	86.422	ENSRROG00000036611	RIOK1	99	81.607	Rhinopithecus_roxellana
ENSRNOG00000014049	Riok1	69	39.155	YOR119C	RIO1	96	35.861	Saccharomyces_cerevisiae
ENSRNOG00000014049	Riok1	100	87.716	ENSSBOG00000012588	RIOK1	99	82.740	Saimiri_boliviensis_boliviensis
ENSRNOG00000014049	Riok1	81	83.684	ENSSHAG00000003091	RIOK1	92	76.778	Sarcophilus_harrisii
ENSRNOG00000014049	Riok1	100	72.903	ENSSFOG00015001035	riok1	99	66.369	Scleropages_formosus
ENSRNOG00000014049	Riok1	70	66.055	ENSSDUG00000007291	riok1	100	66.667	Seriola_dumerili
ENSRNOG00000014049	Riok1	99	72.786	ENSSLDG00000017657	riok1	99	66.250	Seriola_lalandi_dorsalis
ENSRNOG00000014049	Riok1	100	68.103	ENSSPUG00000007624	RIOK1	93	62.523	Sphenodon_punctatus
ENSRNOG00000014049	Riok1	99	73.434	ENSSPAG00000022710	riok1	100	67.084	Stegastes_partitus
ENSRNOG00000014049	Riok1	100	84.052	ENSSSCG00000001024	RIOK1	99	78.214	Sus_scrofa
ENSRNOG00000014049	Riok1	100	79.149	ENSTGUG00000002331	RIOK1	99	73.936	Taeniopygia_guttata
ENSRNOG00000014049	Riok1	64	62.752	ENSTRUG00000001575	-	100	62.752	Takifugu_rubripes
ENSRNOG00000014049	Riok1	82	62.435	ENSTRUG00000002854	riok1	94	62.435	Takifugu_rubripes
ENSRNOG00000014049	Riok1	100	65.451	ENSTNIG00000003078	riok1	98	58.970	Tetraodon_nigroviridis
ENSRNOG00000014049	Riok1	100	82.328	ENSTBEG00000016730	RIOK1	99	76.964	Tupaia_belangeri
ENSRNOG00000014049	Riok1	81	87.268	ENSTTRG00000017335	RIOK1	81	87.147	Tursiops_truncatus
ENSRNOG00000014049	Riok1	92	86.215	ENSUAMG00000003721	RIOK1	94	80.038	Ursus_americanus
ENSRNOG00000014049	Riok1	100	86.853	ENSUMAG00000018461	RIOK1	99	80.961	Ursus_maritimus
ENSRNOG00000014049	Riok1	68	86.730	ENSVPAG00000010813	-	72	75.694	Vicugna_pacos
ENSRNOG00000014049	Riok1	100	86.638	ENSVVUG00000005018	RIOK1	99	80.961	Vulpes_vulpes
ENSRNOG00000014049	Riok1	98	75.717	ENSXETG00000020436	riok1	95	67.598	Xenopus_tropicalis
ENSRNOG00000014049	Riok1	99	63.067	ENSXCOG00000000245	riok1	100	63.655	Xiphophorus_couchianus
ENSRNOG00000014049	Riok1	82	72.178	ENSXMAG00000014572	riok1	84	68.129	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0004674	protein serine/threonine kinase activity	-	IEA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005829	cytosol	21873635.	IBA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006468	protein phosphorylation	-	IEA	Process
GO:0008150	biological_process	-	ND	Process
GO:0030490	maturation of SSU-rRNA	21873635.	IBA	Process
GO:0030490	maturation of SSU-rRNA	-	ISO	Process
GO:0030688	preribosome, small subunit precursor	21873635.	IBA	Component
GO:0030688	preribosome, small subunit precursor	-	ISO	Component
GO:0034708	methyltransferase complex	-	IEA	Component
GO:0034708	methyltransferase complex	-	ISO	Component
GO:0042274	ribosomal small subunit biogenesis	-	ISO	Process
GO:2000234	positive regulation of rRNA processing	-	IEA	Process
GO:2000234	positive regulation of rRNA processing	-	ISO	Process