EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014209 (Gene tree)
Gene ID: 360574
Gene Symbol: Utp6
Alias: LOC360574|RGD1311017
Full Name: UTP6 small subunit processome component
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 28457 bases
Position: chr10:67257161-67285617
Accession: 1311017
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019044	U3_assoc_6	PF08640.11	6.9e-23	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019044	-	1788	XM_008768149	ENSRNOP00000019044	596 (aa)	-	F1M805

Gene Model

Click here to download ENSRNOG00000014209's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03008	Ribosome biogenesis in eukaryotes	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014209's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014209	Utp6	100	82.915	ENSG00000108651	UTP6	99	82.915	Homo_sapiens
ENSRNOG00000014209	Utp6	100	54.941	ENSAPOG00000000435	utp6	99	54.941	Acanthochromis_polyacanthus
ENSRNOG00000014209	Utp6	99	83.054	ENSAMEG00000005443	UTP6	99	83.054	Ailuropoda_melanoleuca
ENSRNOG00000014209	Utp6	100	53.434	ENSACIG00000004124	utp6	99	53.434	Amphilophus_citrinellus
ENSRNOG00000014209	Utp6	100	54.606	ENSAOCG00000016812	utp6	99	54.606	Amphiprion_ocellaris
ENSRNOG00000014209	Utp6	100	54.271	ENSAPEG00000023565	utp6	99	54.271	Amphiprion_percula
ENSRNOG00000014209	Utp6	100	54.774	ENSATEG00000003401	utp6	99	54.774	Anabas_testudineus
ENSRNOG00000014209	Utp6	99	63.328	ENSAPLG00000005821	UTP6	98	63.328	Anas_platyrhynchos
ENSRNOG00000014209	Utp6	100	64.489	ENSACAG00000009472	UTP6	99	64.489	Anolis_carolinensis
ENSRNOG00000014209	Utp6	100	83.082	ENSANAG00000034603	UTP6	99	83.367	Aotus_nancymaae
ENSRNOG00000014209	Utp6	100	56.114	ENSACLG00000006728	utp6	99	56.114	Astatotilapia_calliptera
ENSRNOG00000014209	Utp6	100	55.109	ENSAMXG00000009478	utp6	99	55.109	Astyanax_mexicanus
ENSRNOG00000014209	Utp6	99	70.302	ENSBTAG00000003769	-	98	70.302	Bos_taurus
ENSRNOG00000014209	Utp6	99	71.980	ENSBTAG00000015612	UTP6	99	71.980	Bos_taurus
ENSRNOG00000014209	Utp6	100	83.417	ENSCJAG00000014115	UTP6	99	83.417	Callithrix_jacchus
ENSRNOG00000014209	Utp6	100	83.417	ENSCAFG00000018507	UTP6	99	83.417	Canis_familiaris
ENSRNOG00000014209	Utp6	100	83.417	ENSCAFG00020014678	UTP6	99	83.417	Canis_lupus_dingo
ENSRNOG00000014209	Utp6	99	72.483	ENSCHIG00000017954	-	99	72.483	Capra_hircus
ENSRNOG00000014209	Utp6	99	72.315	ENSCHIG00000009726	-	99	72.315	Capra_hircus
ENSRNOG00000014209	Utp6	100	74.204	ENSTSYG00000002202	UTP6	99	74.204	Carlito_syrichta
ENSRNOG00000014209	Utp6	88	75.142	ENSCAPG00000017595	UTP6	95	75.142	Cavia_aperea
ENSRNOG00000014209	Utp6	100	85.762	ENSCPOG00000014294	UTP6	100	85.762	Cavia_porcellus
ENSRNOG00000014209	Utp6	100	76.549	ENSCCAG00000033318	-	99	76.549	Cebus_capucinus
ENSRNOG00000014209	Utp6	100	83.250	ENSCATG00000034868	UTP6	99	83.250	Cercocebus_atys
ENSRNOG00000014209	Utp6	100	86.432	ENSCLAG00000007274	UTP6	99	86.432	Chinchilla_lanigera
ENSRNOG00000014209	Utp6	100	82.747	ENSCSAG00000006595	UTP6	99	82.747	Chlorocebus_sabaeus
ENSRNOG00000014209	Utp6	88	62.681	ENSCHOG00000010940	-	88	62.681	Choloepus_hoffmanni
ENSRNOG00000014209	Utp6	100	67.337	ENSCPBG00000004652	UTP6	99	67.337	Chrysemys_picta_bellii
ENSRNOG00000014209	Utp6	99	32.033	ENSCING00000022947	-	99	32.033	Ciona_intestinalis
ENSRNOG00000014209	Utp6	53	37.461	ENSCSAVG00000011416	-	98	37.461	Ciona_savignyi
ENSRNOG00000014209	Utp6	88	62.167	ENSCANG00000031141	UTP6	90	62.167	Colobus_angolensis_palliatus
ENSRNOG00000014209	Utp6	100	90.285	ENSCGRG00001000046	Utp6	100	90.285	Cricetulus_griseus_chok1gshd
ENSRNOG00000014209	Utp6	95	90.106	ENSCGRG00000011543	Utp6	100	90.106	Cricetulus_griseus_crigri
ENSRNOG00000014209	Utp6	100	51.159	ENSCSEG00000013422	utp6	99	67.797	Cynoglossus_semilaevis
ENSRNOG00000014209	Utp6	100	54.271	ENSCVAG00000020322	utp6	99	54.271	Cyprinodon_variegatus
ENSRNOG00000014209	Utp6	100	52.429	ENSDARG00000098433	utp6	100	62.983	Danio_rerio
ENSRNOG00000014209	Utp6	100	84.422	ENSDNOG00000037018	UTP6	99	84.422	Dasypus_novemcinctus
ENSRNOG00000014209	Utp6	91	85.531	ENSDORG00000003843	Utp6	100	85.531	Dipodomys_ordii
ENSRNOG00000014209	Utp6	100	84.925	ENSEASG00005010870	UTP6	99	84.925	Equus_asinus_asinus
ENSRNOG00000014209	Utp6	100	84.590	ENSECAG00000022217	UTP6	99	84.590	Equus_caballus
ENSRNOG00000014209	Utp6	100	55.276	ENSELUG00000006618	utp6	99	55.276	Esox_lucius
ENSRNOG00000014209	Utp6	100	81.271	ENSFCAG00000015795	UTP6	99	81.271	Felis_catus
ENSRNOG00000014209	Utp6	100	65.662	ENSFALG00000002282	UTP6	99	65.662	Ficedula_albicollis
ENSRNOG00000014209	Utp6	100	85.260	ENSFDAG00000019506	UTP6	100	85.260	Fukomys_damarensis
ENSRNOG00000014209	Utp6	100	54.515	ENSFHEG00000010373	utp6	99	54.515	Fundulus_heteroclitus
ENSRNOG00000014209	Utp6	100	53.434	ENSGMOG00000011958	utp6	99	53.434	Gadus_morhua
ENSRNOG00000014209	Utp6	100	63.987	ENSGALG00000003260	UTP6	99	63.987	Gallus_gallus
ENSRNOG00000014209	Utp6	100	54.348	ENSGAFG00000008505	utp6	99	54.348	Gambusia_affinis
ENSRNOG00000014209	Utp6	100	54.439	ENSGACG00000019424	utp6	99	54.439	Gasterosteus_aculeatus
ENSRNOG00000014209	Utp6	100	66.164	ENSGAGG00000004820	UTP6	99	66.164	Gopherus_agassizii
ENSRNOG00000014209	Utp6	99	67.227	ENSGGOG00000026003	-	99	67.227	Gorilla_gorilla
ENSRNOG00000014209	Utp6	100	82.747	ENSGGOG00000013569	UTP6	99	82.747	Gorilla_gorilla
ENSRNOG00000014209	Utp6	100	56.114	ENSHBUG00000018668	utp6	99	56.114	Haplochromis_burtoni
ENSRNOG00000014209	Utp6	99	79.125	ENSHGLG00000008642	-	99	79.125	Heterocephalus_glaber_female
ENSRNOG00000014209	Utp6	100	84.590	ENSHGLG00000010332	UTP6	100	84.590	Heterocephalus_glaber_female
ENSRNOG00000014209	Utp6	100	81.575	ENSHGLG00100014271	-	100	81.575	Heterocephalus_glaber_male
ENSRNOG00000014209	Utp6	95	80.492	ENSHGLG00100006047	-	99	80.492	Heterocephalus_glaber_male
ENSRNOG00000014209	Utp6	100	53.434	ENSHCOG00000017277	utp6	99	53.434	Hippocampus_comes
ENSRNOG00000014209	Utp6	100	54.271	ENSIPUG00000022587	Utp6	99	54.271	Ictalurus_punctatus
ENSRNOG00000014209	Utp6	100	84.422	ENSSTOG00000015875	UTP6	100	84.422	Ictidomys_tridecemlineatus
ENSRNOG00000014209	Utp6	100	54.774	ENSKMAG00000021631	utp6	99	54.774	Kryptolebias_marmoratus
ENSRNOG00000014209	Utp6	100	55.444	ENSLBEG00000002115	utp6	99	55.444	Labrus_bergylta
ENSRNOG00000014209	Utp6	100	64.657	ENSLACG00000017158	UTP6	99	64.657	Latimeria_chalumnae
ENSRNOG00000014209	Utp6	91	59.083	ENSLOCG00000013797	utp6	90	59.083	Lepisosteus_oculatus
ENSRNOG00000014209	Utp6	100	82.747	ENSLAFG00000013008	UTP6	99	82.747	Loxodonta_africana
ENSRNOG00000014209	Utp6	100	83.250	ENSMFAG00000038842	UTP6	99	83.250	Macaca_fascicularis
ENSRNOG00000014209	Utp6	99	58.027	ENSMFAG00000041904	-	99	58.027	Macaca_fascicularis
ENSRNOG00000014209	Utp6	100	83.250	ENSMMUG00000020403	UTP6	99	83.250	Macaca_mulatta
ENSRNOG00000014209	Utp6	100	83.250	ENSMNEG00000039480	UTP6	99	83.250	Macaca_nemestrina
ENSRNOG00000014209	Utp6	100	69.449	ENSMLEG00000032174	UTP6	99	69.449	Mandrillus_leucophaeus
ENSRNOG00000014209	Utp6	99	65.152	ENSMLEG00000039364	-	99	65.152	Mandrillus_leucophaeus
ENSRNOG00000014209	Utp6	100	54.181	ENSMAMG00000002228	utp6	99	54.181	Mastacembelus_armatus
ENSRNOG00000014209	Utp6	100	56.114	ENSMZEG00005023895	utp6	99	56.114	Maylandia_zebra
ENSRNOG00000014209	Utp6	95	63.908	ENSMGAG00000008111	UTP6	99	63.908	Meleagris_gallopavo
ENSRNOG00000014209	Utp6	100	90.620	ENSMAUG00000021895	Utp6	100	90.620	Mesocricetus_auratus
ENSRNOG00000014209	Utp6	100	79.732	ENSMICG00000002632	UTP6	99	79.732	Microcebus_murinus
ENSRNOG00000014209	Utp6	100	90.452	ENSMOCG00000014163	Utp6	100	90.452	Microtus_ochrogaster
ENSRNOG00000014209	Utp6	100	53.846	ENSMMOG00000008653	utp6	99	67.797	Mola_mola
ENSRNOG00000014209	Utp6	100	66.332	ENSMODG00000019206	UTP6	99	66.332	Monodelphis_domestica
ENSRNOG00000014209	Utp6	100	55.184	ENSMALG00000021112	utp6	99	55.184	Monopterus_albus
ENSRNOG00000014209	Utp6	100	92.797	MGP_CAROLIEiJ_G0016828	Utp6	100	92.797	Mus_caroli
ENSRNOG00000014209	Utp6	100	93.132	ENSMUSG00000035575	Utp6	100	93.132	Mus_musculus
ENSRNOG00000014209	Utp6	100	74.707	MGP_PahariEiJ_G0017965	Utp6	100	74.707	Mus_pahari
ENSRNOG00000014209	Utp6	100	92.797	MGP_SPRETEiJ_G0017672	Utp6	100	92.797	Mus_spretus
ENSRNOG00000014209	Utp6	100	81.910	ENSMPUG00000014581	UTP6	99	81.910	Mustela_putorius_furo
ENSRNOG00000014209	Utp6	100	83.752	ENSMLUG00000016422	UTP6	99	83.752	Myotis_lucifugus
ENSRNOG00000014209	Utp6	100	87.772	ENSNGAG00000015482	Utp6	100	87.772	Nannospalax_galili
ENSRNOG00000014209	Utp6	100	55.946	ENSNBRG00000019714	utp6	99	55.946	Neolamprologus_brichardi
ENSRNOG00000014209	Utp6	100	82.077	ENSNLEG00000011009	UTP6	99	82.077	Nomascus_leucogenys
ENSRNOG00000014209	Utp6	89	68.085	ENSOPRG00000008446	-	89	68.085	Ochotona_princeps
ENSRNOG00000014209	Utp6	66	82.911	ENSODEG00000011971	UTP6	100	82.911	Octodon_degus
ENSRNOG00000014209	Utp6	100	56.114	ENSONIG00000018090	utp6	99	56.114	Oreochromis_niloticus
ENSRNOG00000014209	Utp6	98	64.456	ENSOANG00000004279	UTP6	99	64.456	Ornithorhynchus_anatinus
ENSRNOG00000014209	Utp6	100	81.407	ENSOCUG00000016980	UTP6	99	81.407	Oryctolagus_cuniculus
ENSRNOG00000014209	Utp6	100	55.184	ENSORLG00000003546	utp6	64	55.184	Oryzias_latipes
ENSRNOG00000014209	Utp6	100	55.184	ENSORLG00020010377	utp6	99	55.184	Oryzias_latipes_hni
ENSRNOG00000014209	Utp6	100	54.515	ENSORLG00015008893	utp6	99	54.515	Oryzias_latipes_hsok
ENSRNOG00000014209	Utp6	100	54.849	ENSOMEG00000017487	utp6	99	54.849	Oryzias_melastigma
ENSRNOG00000014209	Utp6	87	74.095	ENSOGAG00000004511	UTP6	100	74.095	Otolemur_garnettii
ENSRNOG00000014209	Utp6	99	72.315	ENSOARG00000013474	UTP6	99	72.315	Ovis_aries
ENSRNOG00000014209	Utp6	100	83.082	ENSPPAG00000038089	UTP6	99	83.082	Pan_paniscus
ENSRNOG00000014209	Utp6	99	67.282	ENSPPAG00000016895	-	99	67.282	Pan_paniscus
ENSRNOG00000014209	Utp6	100	84.757	ENSPPRG00000001010	UTP6	99	84.757	Panthera_pardus
ENSRNOG00000014209	Utp6	100	84.757	ENSPTIG00000013913	UTP6	99	84.757	Panthera_tigris_altaica
ENSRNOG00000014209	Utp6	100	83.082	ENSPTRG00000008977	UTP6	99	83.082	Pan_troglodytes
ENSRNOG00000014209	Utp6	99	67.114	ENSPTRG00000044798	-	99	67.114	Pan_troglodytes
ENSRNOG00000014209	Utp6	100	80.435	ENSPANG00000023113	UTP6	99	80.435	Papio_anubis
ENSRNOG00000014209	Utp6	99	65.093	ENSPANG00000034274	-	99	65.093	Papio_anubis
ENSRNOG00000014209	Utp6	100	54.682	ENSPKIG00000004653	utp6	99	54.682	Paramormyrops_kingsleyae
ENSRNOG00000014209	Utp6	100	66.499	ENSPSIG00000012435	UTP6	99	66.499	Pelodiscus_sinensis
ENSRNOG00000014209	Utp6	100	54.013	ENSPMGG00000009548	utp6	99	54.013	Periophthalmus_magnuspinnatus
ENSRNOG00000014209	Utp6	100	90.117	ENSPEMG00000014081	Utp6	100	90.117	Peromyscus_maniculatus_bairdii
ENSRNOG00000014209	Utp6	93	45.648	ENSPMAG00000009561	utp6	99	45.648	Petromyzon_marinus
ENSRNOG00000014209	Utp6	100	68.174	ENSPCIG00000029968	UTP6	86	68.174	Phascolarctos_cinereus
ENSRNOG00000014209	Utp6	100	54.181	ENSPFOG00000013918	utp6	99	54.181	Poecilia_formosa
ENSRNOG00000014209	Utp6	100	54.515	ENSPLAG00000017825	utp6	99	54.515	Poecilia_latipinna
ENSRNOG00000014209	Utp6	100	54.181	ENSPMEG00000008133	utp6	99	54.181	Poecilia_mexicana
ENSRNOG00000014209	Utp6	100	53.769	ENSPREG00000013108	utp6	99	53.769	Poecilia_reticulata
ENSRNOG00000014209	Utp6	100	79.899	ENSPPYG00000008154	UTP6	99	79.899	Pongo_abelii
ENSRNOG00000014209	Utp6	63	58.777	ENSPCAG00000014878	-	69	58.777	Procavia_capensis
ENSRNOG00000014209	Utp6	100	79.229	ENSPCOG00000010224	UTP6	99	79.229	Propithecus_coquereli
ENSRNOG00000014209	Utp6	100	79.899	ENSPVAG00000015759	UTP6	99	79.899	Pteropus_vampyrus
ENSRNOG00000014209	Utp6	100	55.779	ENSPNYG00000002290	utp6	99	55.779	Pundamilia_nyererei
ENSRNOG00000014209	Utp6	100	52.931	ENSPNAG00000027370	utp6	99	52.931	Pygocentrus_nattereri
ENSRNOG00000014209	Utp6	100	82.747	ENSRBIG00000020822	UTP6	99	82.747	Rhinopithecus_bieti
ENSRNOG00000014209	Utp6	100	82.747	ENSRROG00000036838	UTP6	99	82.747	Rhinopithecus_roxellana
ENSRNOG00000014209	Utp6	100	55.092	ENSSFOG00015005978	utp6	99	55.092	Scleropages_formosus
ENSRNOG00000014209	Utp6	100	54.941	ENSSMAG00000014772	utp6	99	54.941	Scophthalmus_maximus
ENSRNOG00000014209	Utp6	100	55.611	ENSSDUG00000000329	utp6	99	55.611	Seriola_dumerili
ENSRNOG00000014209	Utp6	100	55.444	ENSSLDG00000016724	utp6	99	55.444	Seriola_lalandi_dorsalis
ENSRNOG00000014209	Utp6	99	72.315	ENSSARG00000010778	UTP6	99	72.315	Sorex_araneus
ENSRNOG00000014209	Utp6	100	65.829	ENSSPUG00000005273	UTP6	99	65.829	Sphenodon_punctatus
ENSRNOG00000014209	Utp6	100	53.434	ENSSPAG00000011871	utp6	99	53.434	Stegastes_partitus
ENSRNOG00000014209	Utp6	100	82.747	ENSSSCG00000017745	UTP6	99	84.777	Sus_scrofa
ENSRNOG00000014209	Utp6	100	65.385	ENSTGUG00000004999	UTP6	99	65.385	Taeniopygia_guttata
ENSRNOG00000014209	Utp6	100	54.774	ENSTRUG00000012005	utp6	100	54.774	Takifugu_rubripes
ENSRNOG00000014209	Utp6	100	54.774	ENSTNIG00000003235	utp6	100	54.774	Tetraodon_nigroviridis
ENSRNOG00000014209	Utp6	67	74.033	ENSTBEG00000005388	-	67	74.033	Tupaia_belangeri
ENSRNOG00000014209	Utp6	100	82.245	ENSTTRG00000009911	UTP6	99	82.245	Tursiops_truncatus
ENSRNOG00000014209	Utp6	99	83.557	ENSUMAG00000015139	UTP6	99	83.557	Ursus_maritimus
ENSRNOG00000014209	Utp6	100	83.250	ENSVPAG00000005782	UTP6	99	83.250	Vicugna_pacos
ENSRNOG00000014209	Utp6	100	83.752	ENSVVUG00000012238	UTP6	99	83.752	Vulpes_vulpes
ENSRNOG00000014209	Utp6	99	50.420	ENSXETG00000020057	utp6	99	50.420	Xenopus_tropicalis
ENSRNOG00000014209	Utp6	100	54.167	ENSXCOG00000013626	utp6	99	54.167	Xiphophorus_couchianus
ENSRNOG00000014209	Utp6	100	54.181	ENSXMAG00000017414	utp6	99	54.181	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	21873635.	IBA	Process
GO:0005730	nucleolus	-	ISO	Component
GO:0030515	snoRNA binding	-	IEA	Function
GO:0032040	small-subunit processome	21873635.	IBA	Component
GO:0034388	Pwp2p-containing subcomplex of 90S preribosome	21873635.	IBA	Component