EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014353 (Gene tree)
Gene ID: 292683
Gene Symbol: Sympk
Alias: HNF-3G|Hfn3g|LOC292683
Full Name: symplekin
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 28306 bases
Position: chr1:79931156-79959461
Accession: 1306735
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000071808	Symplekin_C	PF12295.8	8.3e-74	1	1
ENSRNOP00000019814	Symplekin_C	PF12295.8	3.6e-63	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000084985	-	3990	XM_008758908	ENSRNOP00000071808	1280 (aa)	XP_008757130	A0A0G2K1E5
ENSRNOT00000019814	-	4031	-	ENSRNOP00000019814	1280 (aa)	-	F1LSH0

Gene Model

Click here to download ENSRNOG00000014353's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03015	mRNA surveillance pathway	KEGG
rno04530	Tight junction	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014353's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014353	Sympk	100	93.765	ENSG00000125755	SYMPK	100	100.000	Homo_sapiens
ENSRNOG00000014353	Sympk	84	75.092	ENSAPOG00000015934	sympk	97	73.451	Acanthochromis_polyacanthus
ENSRNOG00000014353	Sympk	100	93.531	ENSAMEG00000000680	SYMPK	100	93.687	Ailuropoda_melanoleuca
ENSRNOG00000014353	Sympk	85	74.453	ENSACIG00000006357	sympk	92	74.453	Amphilophus_citrinellus
ENSRNOG00000014353	Sympk	84	74.724	ENSAOCG00000024124	sympk	92	74.977	Amphiprion_ocellaris
ENSRNOG00000014353	Sympk	84	74.724	ENSAPEG00000003465	sympk	92	73.156	Amphiprion_percula
ENSRNOG00000014353	Sympk	85	75.000	ENSATEG00000008472	sympk	90	75.000	Anabas_testudineus
ENSRNOG00000014353	Sympk	88	80.847	ENSACAG00000004126	SYMPK	97	78.698	Anolis_carolinensis
ENSRNOG00000014353	Sympk	100	93.920	ENSANAG00000021087	SYMPK	100	98.400	Aotus_nancymaae
ENSRNOG00000014353	Sympk	89	72.498	ENSACLG00000001813	sympk	90	74.524	Astatotilapia_calliptera
ENSRNOG00000014353	Sympk	89	72.585	ENSAMXG00000013677	sympk	91	73.863	Astyanax_mexicanus
ENSRNOG00000014353	Sympk	100	92.673	ENSBTAG00000012101	SYMPK	100	93.141	Bos_taurus
ENSRNOG00000014353	Sympk	95	96.496	ENSCJAG00000012172	SYMPK	99	95.484	Callithrix_jacchus
ENSRNOG00000014353	Sympk	100	93.765	ENSCAFG00000004376	SYMPK	100	93.765	Canis_familiaris
ENSRNOG00000014353	Sympk	100	93.765	ENSCAFG00020001815	SYMPK	100	93.765	Canis_lupus_dingo
ENSRNOG00000014353	Sympk	100	93.219	ENSCHIG00000026784	SYMPK	100	93.375	Capra_hircus
ENSRNOG00000014353	Sympk	100	93.998	ENSTSYG00000006268	SYMPK	100	97.600	Carlito_syrichta
ENSRNOG00000014353	Sympk	83	94.559	ENSCAPG00000005112	SYMPK	96	94.559	Cavia_aperea
ENSRNOG00000014353	Sympk	100	89.783	ENSCPOG00000010434	SYMPK	100	89.628	Cavia_porcellus
ENSRNOG00000014353	Sympk	100	93.687	ENSCCAG00000036309	SYMPK	100	98.400	Cebus_capucinus
ENSRNOG00000014353	Sympk	100	93.843	ENSCATG00000045107	SYMPK	100	99.200	Cercocebus_atys
ENSRNOG00000014353	Sympk	100	93.609	ENSCLAG00000001206	SYMPK	100	93.531	Chinchilla_lanigera
ENSRNOG00000014353	Sympk	100	93.843	ENSCSAG00000003115	SYMPK	100	94.076	Chlorocebus_sabaeus
ENSRNOG00000014353	Sympk	69	100.000	ENSCHOG00000012456	SYMPK	81	100.000	Choloepus_hoffmanni
ENSRNOG00000014353	Sympk	99	81.522	ENSCPBG00000007170	SYMPK	98	83.373	Chrysemys_picta_bellii
ENSRNOG00000014353	Sympk	83	48.155	ENSCING00000021232	-	98	48.155	Ciona_intestinalis
ENSRNOG00000014353	Sympk	81	47.606	ENSCSAVG00000005154	-	100	47.887	Ciona_savignyi
ENSRNOG00000014353	Sympk	100	91.486	ENSCANG00000040907	SYMPK	100	99.200	Colobus_angolensis_palliatus
ENSRNOG00000014353	Sympk	92	95.006	ENSCGRG00001010086	Sympk	100	95.250	Cricetulus_griseus_chok1gshd
ENSRNOG00000014353	Sympk	87	73.074	ENSCSEG00000016802	sympk	90	74.296	Cynoglossus_semilaevis
ENSRNOG00000014353	Sympk	85	73.909	ENSDARG00000059553	sympk	88	73.909	Danio_rerio
ENSRNOG00000014353	Sympk	99	92.537	ENSDNOG00000016149	SYMPK	98	92.694	Dasypus_novemcinctus
ENSRNOG00000014353	Sympk	86	36.622	FBgn0037371	Sym	95	36.622	Drosophila_melanogaster
ENSRNOG00000014353	Sympk	66	62.673	ENSEBUG00000000387	sympk	89	62.673	Eptatretus_burgeri
ENSRNOG00000014353	Sympk	100	93.146	ENSEASG00005014227	SYMPK	100	93.692	Equus_asinus_asinus
ENSRNOG00000014353	Sympk	100	93.146	ENSECAG00000008163	SYMPK	100	93.692	Equus_caballus
ENSRNOG00000014353	Sympk	68	93.333	ENSEEUG00000000270	-	81	93.333	Erinaceus_europaeus
ENSRNOG00000014353	Sympk	86	75.247	ENSELUG00000000850	sympk	88	75.247	Esox_lucius
ENSRNOG00000014353	Sympk	98	97.406	ENSFCAG00000007337	SYMPK	100	93.687	Felis_catus
ENSRNOG00000014353	Sympk	100	93.302	ENSFDAG00000011272	SYMPK	100	93.458	Fukomys_damarensis
ENSRNOG00000014353	Sympk	85	75.184	ENSFHEG00000010274	sympk	89	75.184	Fundulus_heteroclitus
ENSRNOG00000014353	Sympk	83	73.414	ENSGMOG00000002357	sympk	99	73.414	Gadus_morhua
ENSRNOG00000014353	Sympk	86	74.955	ENSGAFG00000010976	sympk	89	75.574	Gambusia_affinis
ENSRNOG00000014353	Sympk	88	72.368	ENSGACG00000002735	sympk	98	74.587	Gasterosteus_aculeatus
ENSRNOG00000014353	Sympk	64	79.928	ENSGAGG00000012538	-	88	84.733	Gopherus_agassizii
ENSRNOG00000014353	Sympk	100	93.843	ENSGGOG00000003410	SYMPK	100	99.200	Gorilla_gorilla
ENSRNOG00000014353	Sympk	89	72.830	ENSHBUG00000023564	sympk	90	74.864	Haplochromis_burtoni
ENSRNOG00000014353	Sympk	100	89.339	ENSHGLG00000005228	SYMPK	100	89.339	Heterocephalus_glaber_female
ENSRNOG00000014353	Sympk	100	89.122	ENSHGLG00100018571	SYMPK	100	89.122	Heterocephalus_glaber_male
ENSRNOG00000014353	Sympk	84	70.577	ENSHCOG00000017400	sympk	91	70.577	Hippocampus_comes
ENSRNOG00000014353	Sympk	86	73.987	ENSIPUG00000024020	SYMPK	95	69.547	Ictalurus_punctatus
ENSRNOG00000014353	Sympk	100	94.466	ENSSTOG00000001534	SYMPK	100	94.622	Ictidomys_tridecemlineatus
ENSRNOG00000014353	Sympk	100	93.302	ENSJJAG00000006633	Sympk	100	93.302	Jaculus_jaculus
ENSRNOG00000014353	Sympk	85	74.771	ENSKMAG00000016292	sympk	99	69.910	Kryptolebias_marmoratus
ENSRNOG00000014353	Sympk	85	74.499	ENSLBEG00000027913	sympk	96	70.785	Labrus_bergylta
ENSRNOG00000014353	Sympk	95	70.521	ENSLACG00000016497	SYMPK	100	70.823	Latimeria_chalumnae
ENSRNOG00000014353	Sympk	100	93.141	ENSLAFG00000008726	SYMPK	100	93.219	Loxodonta_africana
ENSRNOG00000014353	Sympk	100	93.843	ENSMMUG00000015428	SYMPK	100	99.200	Macaca_mulatta
ENSRNOG00000014353	Sympk	100	94.076	ENSMNEG00000019439	SYMPK	100	99.200	Macaca_nemestrina
ENSRNOG00000014353	Sympk	100	94.076	ENSMLEG00000040508	SYMPK	100	99.200	Mandrillus_leucophaeus
ENSRNOG00000014353	Sympk	85	74.587	ENSMAMG00000010486	sympk	89	74.587	Mastacembelus_armatus
ENSRNOG00000014353	Sympk	89	72.498	ENSMZEG00005014146	sympk	90	74.524	Maylandia_zebra
ENSRNOG00000014353	Sympk	100	94.531	ENSMAUG00000015657	Sympk	100	94.609	Mesocricetus_auratus
ENSRNOG00000014353	Sympk	100	93.375	ENSMICG00000001871	SYMPK	100	96.800	Microcebus_murinus
ENSRNOG00000014353	Sympk	100	97.422	ENSMOCG00000008388	Sympk	100	97.422	Microtus_ochrogaster
ENSRNOG00000014353	Sympk	85	72.545	ENSMMOG00000019227	sympk	93	72.545	Mola_mola
ENSRNOG00000014353	Sympk	97	87.762	ENSMODG00000021534	SYMPK	96	88.141	Monodelphis_domestica
ENSRNOG00000014353	Sympk	73	69.681	ENSMALG00000008347	sympk	96	70.000	Monopterus_albus
ENSRNOG00000014353	Sympk	100	98.594	MGP_CAROLIEiJ_G0029267	Sympk	100	98.594	Mus_caroli
ENSRNOG00000014353	Sympk	100	97.904	ENSMUSG00000023118	Sympk	100	97.904	Mus_musculus
ENSRNOG00000014353	Sympk	100	98.203	MGP_PahariEiJ_G0021127	Sympk	100	98.203	Mus_pahari
ENSRNOG00000014353	Sympk	100	97.741	MGP_SPRETEiJ_G0030351	-	100	97.741	Mus_spretus
ENSRNOG00000014353	Sympk	100	91.972	ENSMPUG00000005505	SYMPK	100	92.128	Mustela_putorius_furo
ENSRNOG00000014353	Sympk	79	89.832	ENSMLUG00000001359	SYMPK	100	90.128	Myotis_lucifugus
ENSRNOG00000014353	Sympk	100	95.312	ENSNGAG00000000820	Sympk	100	95.391	Nannospalax_galili
ENSRNOG00000014353	Sympk	86	73.201	ENSNBRG00000018101	sympk	91	75.470	Neolamprologus_brichardi
ENSRNOG00000014353	Sympk	100	80.668	ENSNLEG00000002369	SYMPK	100	81.134	Nomascus_leucogenys
ENSRNOG00000014353	Sympk	80	92.982	ENSMEUG00000003866	SYMPK	80	92.982	Notamacropus_eugenii
ENSRNOG00000014353	Sympk	100	91.121	ENSOPRG00000009967	SYMPK	100	91.355	Ochotona_princeps
ENSRNOG00000014353	Sympk	100	94.003	ENSODEG00000007519	SYMPK	100	93.847	Octodon_degus
ENSRNOG00000014353	Sympk	88	72.695	ENSONIG00000016802	sympk	95	74.340	Oreochromis_niloticus
ENSRNOG00000014353	Sympk	75	96.580	ENSOCUG00000005511	SYMPK	90	96.580	Oryctolagus_cuniculus
ENSRNOG00000014353	Sympk	84	75.666	ENSORLG00000015338	sympk	96	74.367	Oryzias_latipes
ENSRNOG00000014353	Sympk	84	75.574	ENSORLG00020004402	sympk	90	75.574	Oryzias_latipes_hni
ENSRNOG00000014353	Sympk	84	75.666	ENSORLG00015005712	sympk	90	75.666	Oryzias_latipes_hsok
ENSRNOG00000014353	Sympk	84	75.277	ENSOMEG00000022561	sympk	90	75.277	Oryzias_melastigma
ENSRNOG00000014353	Sympk	100	94.310	ENSOGAG00000013483	SYMPK	100	94.466	Otolemur_garnettii
ENSRNOG00000014353	Sympk	100	88.459	ENSOARG00000010349	SYMPK	100	88.613	Ovis_aries
ENSRNOG00000014353	Sympk	100	93.765	ENSPPAG00000043204	SYMPK	100	93.998	Pan_paniscus
ENSRNOG00000014353	Sympk	100	93.531	ENSPPRG00000004282	SYMPK	100	93.687	Panthera_pardus
ENSRNOG00000014353	Sympk	100	91.348	ENSPTIG00000015420	SYMPK	94	97.406	Panthera_tigris_altaica
ENSRNOG00000014353	Sympk	100	93.765	ENSPTRG00000011169	SYMPK	100	93.998	Pan_troglodytes
ENSRNOG00000014353	Sympk	100	93.765	ENSPANG00000019930	SYMPK	100	99.200	Papio_anubis
ENSRNOG00000014353	Sympk	86	75.961	ENSPKIG00000017132	sympk	96	72.669	Paramormyrops_kingsleyae
ENSRNOG00000014353	Sympk	100	97.346	ENSPEMG00000007564	Sympk	100	97.346	Peromyscus_maniculatus_bairdii
ENSRNOG00000014353	Sympk	80	65.580	ENSPMAG00000004936	sympk	100	65.676	Petromyzon_marinus
ENSRNOG00000014353	Sympk	98	87.165	ENSPCIG00000024476	SYMPK	98	86.943	Phascolarctos_cinereus
ENSRNOG00000014353	Sympk	85	75.666	ENSPFOG00000001194	sympk	89	75.666	Poecilia_formosa
ENSRNOG00000014353	Sympk	85	75.574	ENSPLAG00000012995	sympk	89	75.574	Poecilia_latipinna
ENSRNOG00000014353	Sympk	85	75.574	ENSPMEG00000008099	sympk	89	75.574	Poecilia_mexicana
ENSRNOG00000014353	Sympk	85	75.114	ENSPREG00000006176	sympk	90	75.121	Poecilia_reticulata
ENSRNOG00000014353	Sympk	87	97.032	ENSPPYG00000010135	SYMPK	99	97.032	Pongo_abelii
ENSRNOG00000014353	Sympk	94	89.365	ENSPCAG00000005182	SYMPK	94	89.365	Procavia_capensis
ENSRNOG00000014353	Sympk	100	94.154	ENSPCOG00000023740	SYMPK	100	97.600	Propithecus_coquereli
ENSRNOG00000014353	Sympk	98	92.869	ENSPVAG00000001355	SYMPK	100	93.029	Pteropus_vampyrus
ENSRNOG00000014353	Sympk	89	72.743	ENSPNYG00000011455	sympk	89	74.774	Pundamilia_nyererei
ENSRNOG00000014353	Sympk	90	73.087	ENSPNAG00000016505	sympk	89	75.179	Pygocentrus_nattereri
ENSRNOG00000014353	Sympk	99	93.823	ENSRBIG00000040963	SYMPK	100	99.200	Rhinopithecus_bieti
ENSRNOG00000014353	Sympk	100	93.843	ENSRROG00000024834	SYMPK	97	97.568	Rhinopithecus_roxellana
ENSRNOG00000014353	Sympk	100	93.765	ENSSBOG00000034497	SYMPK	100	98.400	Saimiri_boliviensis_boliviensis
ENSRNOG00000014353	Sympk	90	90.250	ENSSHAG00000003139	SYMPK	99	90.250	Sarcophilus_harrisii
ENSRNOG00000014353	Sympk	86	76.093	ENSSFOG00015006974	sympk	90	76.093	Scleropages_formosus
ENSRNOG00000014353	Sympk	86	73.609	ENSSMAG00000018130	sympk	71	74.931	Scophthalmus_maximus
ENSRNOG00000014353	Sympk	93	70.407	ENSSDUG00000007092	sympk	92	73.571	Seriola_dumerili
ENSRNOG00000014353	Sympk	93	70.223	ENSSLDG00000014774	sympk	96	71.653	Seriola_lalandi_dorsalis
ENSRNOG00000014353	Sympk	60	100.000	ENSSARG00000004274	-	66	100.000	Sorex_araneus
ENSRNOG00000014353	Sympk	99	81.328	ENSSPUG00000002789	SYMPK	96	81.575	Sphenodon_punctatus
ENSRNOG00000014353	Sympk	84	75.230	ENSSPAG00000000854	sympk	89	75.023	Stegastes_partitus
ENSRNOG00000014353	Sympk	100	93.687	ENSSSCG00000003093	SYMPK	100	93.843	Sus_scrofa
ENSRNOG00000014353	Sympk	87	73.268	ENSTRUG00000010202	sympk	90	74.522	Takifugu_rubripes
ENSRNOG00000014353	Sympk	85	74.128	ENSTNIG00000017855	sympk	98	73.243	Tetraodon_nigroviridis
ENSRNOG00000014353	Sympk	88	94.156	ENSTBEG00000000454	SYMPK	88	94.156	Tupaia_belangeri
ENSRNOG00000014353	Sympk	100	85.269	ENSTTRG00000014311	SYMPK	100	85.503	Tursiops_truncatus
ENSRNOG00000014353	Sympk	100	91.841	ENSUAMG00000022272	SYMPK	95	96.912	Ursus_americanus
ENSRNOG00000014353	Sympk	100	93.687	ENSUMAG00000023698	SYMPK	100	93.843	Ursus_maritimus
ENSRNOG00000014353	Sympk	89	95.881	ENSVVUG00000003024	SYMPK	99	95.881	Vulpes_vulpes
ENSRNOG00000014353	Sympk	90	72.280	ENSXETG00000024453	sympk	94	72.366	Xenopus_tropicalis
ENSRNOG00000014353	Sympk	84	74.191	ENSXCOG00000015368	sympk	100	74.191	Xiphophorus_couchianus
ENSRNOG00000014353	Sympk	86	74.955	ENSXMAG00000005737	sympk	97	71.285	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0005886	plasma membrane	-	IEA	Component
GO:0005886	plasma membrane	-	ISO	Component
GO:0006378	mRNA polyadenylation	-	IEA	Process
GO:0006378	mRNA polyadenylation	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016604	nuclear body	-	ISO	Component
GO:0032091	negative regulation of protein binding	-	IEA	Process
GO:0032091	negative regulation of protein binding	-	ISO	Process
GO:0035307	positive regulation of protein dephosphorylation	-	IEA	Process
GO:0035307	positive regulation of protein dephosphorylation	-	ISO	Process
GO:0097165	nuclear stress granule	-	IEA	Component
GO:0097165	nuclear stress granule	-	ISO	Component