EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014434 (Gene tree)
Gene ID: 308215
Gene Symbol: Chd1
Alias: LOC308215
Full Name: chromodomain helicase DNA binding protein 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 62650 bases
Position: chr1:57692836-57755485
Accession: 1306794
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000073550	ResIII	PF04851.15	8.1e-08	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000083968	-	5188	-	ENSRNOP00000073550	1423 (aa)	-	A0A0G2K5T4
ENSRNOT00000019358	-	5136	-	ENSRNOP00000019358	1711 (aa)	-	D4AAG9

Gene Model

Click here to download ENSRNOG00000014434's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014434's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014434	Chd1	94	62.695	ENSRNOG00000012716	Chd2	72	65.561

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014434	Chd1	99	95.490	ENSG00000153922	CHD1	83	95.701	Homo_sapiens
ENSRNOG00000014434	Chd1	81	82.297	ENSAPOG00000005764	chd1	98	82.297	Acanthochromis_polyacanthus
ENSRNOG00000014434	Chd1	86	80.540	ENSAOCG00000023105	chd1	75	81.749	Amphiprion_ocellaris
ENSRNOG00000014434	Chd1	86	81.944	ENSAPEG00000013544	chd1	75	83.193	Amphiprion_percula
ENSRNOG00000014434	Chd1	85	82.852	ENSAMXG00000010843	chd1	91	83.684	Astyanax_mexicanus
ENSRNOG00000014434	Chd1	99	95.848	ENSCATG00000032035	CHD1	83	95.778	Cercocebus_atys
ENSRNOG00000014434	Chd1	99	95.848	ENSCSAG00000015339	CHD1	83	95.778	Chlorocebus_sabaeus
ENSRNOG00000014434	Chd1	71	83.019	ENSCPBG00000015831	CHD1	99	83.633	Chrysemys_picta_bellii
ENSRNOG00000014434	Chd1	99	93.239	ENSCANG00000036916	CHD1	83	93.239	Colobus_angolensis_palliatus
ENSRNOG00000014434	Chd1	99	97.036	ENSCGRG00001023943	Chd1	83	97.036	Cricetulus_griseus_chok1gshd
ENSRNOG00000014434	Chd1	99	97.036	ENSCGRG00000008652	Chd1	83	97.036	Cricetulus_griseus_crigri
ENSRNOG00000014434	Chd1	88	78.167	ENSCSEG00000009553	chd1	75	80.956	Cynoglossus_semilaevis
ENSRNOG00000014434	Chd1	95	95.368	ENSEASG00005016110	CHD1	97	95.441	Equus_asinus_asinus
ENSRNOG00000014434	Chd1	86	80.813	ENSELUG00000017677	chd1	75	81.057	Esox_lucius
ENSRNOG00000014434	Chd1	86	80.571	ENSFHEG00000021164	chd1	89	80.571	Fundulus_heteroclitus
ENSRNOG00000014434	Chd1	95	77.855	ENSGMOG00000001537	chd1	82	74.536	Gadus_morhua
ENSRNOG00000014434	Chd1	89	89.308	ENSGALG00000031327	-	78	89.465	Gallus_gallus
ENSRNOG00000014434	Chd1	90	81.611	ENSGAFG00000019880	chd1	85	82.562	Gambusia_affinis
ENSRNOG00000014434	Chd1	98	91.601	ENSGGOG00000011463	CHD1	82	91.601	Gorilla_gorilla
ENSRNOG00000014434	Chd1	85	82.090	ENSHCOG00000014222	chd1	74	82.506	Hippocampus_comes
ENSRNOG00000014434	Chd1	83	84.428	ENSIPUG00000001369	chd1	75	84.428	Ictalurus_punctatus
ENSRNOG00000014434	Chd1	71	93.880	ENSLAFG00000023183	CHD1	94	93.880	Loxodonta_africana
ENSRNOG00000014434	Chd1	99	95.848	ENSMFAG00000031226	CHD1	83	95.778	Macaca_fascicularis
ENSRNOG00000014434	Chd1	100	95.728	ENSMMUG00000014090	CHD1	99	95.728	Macaca_mulatta
ENSRNOG00000014434	Chd1	99	95.781	ENSMNEG00000045073	CHD1	83	95.710	Macaca_nemestrina
ENSRNOG00000014434	Chd1	95	90.600	ENSMLEG00000041096	CHD1	79	90.748	Mandrillus_leucophaeus
ENSRNOG00000014434	Chd1	84	82.583	ENSMZEG00005010957	chd1	90	82.583	Maylandia_zebra
ENSRNOG00000014434	Chd1	54	68.252	ENSMGAG00000008369	-	100	68.286	Meleagris_gallopavo
ENSRNOG00000014434	Chd1	97	97.234	ENSMOCG00000019121	Chd1	82	97.234	Microtus_ochrogaster
ENSRNOG00000014434	Chd1	53	94.737	ENSMODG00000019266	-	100	94.474	Monodelphis_domestica
ENSRNOG00000014434	Chd1	95	77.266	ENSMALG00000013317	chd1	95	77.476	Monopterus_albus
ENSRNOG00000014434	Chd1	99	97.671	MGP_CAROLIEiJ_G0021099	Chd1	99	97.959	Mus_caroli
ENSRNOG00000014434	Chd1	99	97.953	ENSMUSG00000023852	Chd1	99	98.052	Mus_musculus
ENSRNOG00000014434	Chd1	99	98.165	MGP_PahariEiJ_G0023414	Chd1	99	98.610	Mus_pahari
ENSRNOG00000014434	Chd1	80	84.035	ENSNBRG00000006860	chd1	72	84.035	Neolamprologus_brichardi
ENSRNOG00000014434	Chd1	95	95.488	ENSNLEG00000014493	CHD1	79	95.710	Nomascus_leucogenys
ENSRNOG00000014434	Chd1	99	91.831	ENSOANG00000004891	CHD1	83	91.761	Ornithorhynchus_anatinus
ENSRNOG00000014434	Chd1	71	76.575	ENSORLG00015016725	chd1	93	78.621	Oryzias_latipes_hsok
ENSRNOG00000014434	Chd1	99	92.356	ENSPPAG00000043367	CHD1	83	92.496	Pan_paniscus
ENSRNOG00000014434	Chd1	99	95.490	ENSPTRG00000017103	CHD1	83	95.701	Pan_troglodytes
ENSRNOG00000014434	Chd1	99	95.848	ENSPANG00000006387	CHD1	83	95.778	Papio_anubis
ENSRNOG00000014434	Chd1	88	79.003	ENSPKIG00000024719	chd1	75	78.711	Paramormyrops_kingsleyae
ENSRNOG00000014434	Chd1	87	80.738	ENSPMGG00000005785	chd1	93	80.723	Periophthalmus_magnuspinnatus
ENSRNOG00000014434	Chd1	99	97.461	ENSPEMG00000015939	Chd1	83	97.461	Peromyscus_maniculatus_bairdii
ENSRNOG00000014434	Chd1	59	76.686	ENSPLAG00000006473	-	85	77.354	Poecilia_latipinna
ENSRNOG00000014434	Chd1	95	76.471	ENSPREG00000004209	chd1	81	76.809	Poecilia_reticulata
ENSRNOG00000014434	Chd1	96	96.501	ENSRBIG00000044325	CHD1	82	96.501	Rhinopithecus_bieti
ENSRNOG00000014434	Chd1	99	95.707	ENSRROG00000001726	CHD1	83	95.707	Rhinopithecus_roxellana
ENSRNOG00000014434	Chd1	86	81.626	ENSSFOG00015007161	chd1	91	81.862	Scleropages_formosus
ENSRNOG00000014434	Chd1	95	78.146	ENSSDUG00000018314	chd1	95	78.063	Seriola_dumerili
ENSRNOG00000014434	Chd1	61	83.827	ENSSLDG00000017244	chd1	84	85.782	Seriola_lalandi_dorsalis
ENSRNOG00000014434	Chd1	95	78.235	ENSSPAG00000007024	chd1	95	78.088	Stegastes_partitus
ENSRNOG00000014434	Chd1	99	95.698	ENSSSCG00000014177	CHD1	96	95.628	Sus_scrofa
ENSRNOG00000014434	Chd1	99	75.653	ENSTRUG00000010282	chd1	83	76.073	Takifugu_rubripes
ENSRNOG00000014434	Chd1	86	77.950	ENSTNIG00000007101	chd1	100	78.466	Tetraodon_nigroviridis
ENSRNOG00000014434	Chd1	95	73.506	ENSXCOG00000017184	chd1	81	73.536	Xiphophorus_couchianus
ENSRNOG00000014434	Chd1	92	77.837	ENSXMAG00000014538	chd1	95	78.298	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001650	fibrillar center	-	IEA	Component
GO:0001650	fibrillar center	-	ISO	Component
GO:0003674	molecular_function	-	ND	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	IEA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0006338	chromatin remodeling	-	IEA	Process
GO:0006338	chromatin remodeling	-	ISO	Process
GO:0008150	biological_process	-	ND	Process
GO:0016569	covalent chromatin modification	-	IEA	Process
GO:0016569	covalent chromatin modification	-	ISO	Process
GO:0035064	methylated histone binding	-	IEA	Function
GO:0035064	methylated histone binding	-	ISO	Function
GO:0043923	positive regulation by host of viral transcription	-	IEA	Process
GO:0043923	positive regulation by host of viral transcription	-	ISO	Process