EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014452 (Gene tree)
Gene ID: 307829
Gene Symbol: Zfhx3
Alias: Atbf1|LOC307829|RGD1560268
Full Name: zinc finger homeobox 3
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 162218 bases
Position: chr19:42758127-42920344
Accession: 1560268
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000061590	zf-C2H2	PF00096.26	2e-12	1	2
ENSRNOP00000061590	zf-C2H2	PF00096.26	2e-12	2	2
ENSRNOP00000019408	zf-C2H2	PF00096.26	2.5e-12	1	2
ENSRNOP00000019408	zf-C2H2	PF00096.26	2.5e-12	2	2
ENSRNOP00000061590	zf-met	PF12874.7	9.7e-06	1	1
ENSRNOP00000019408	zf-met	PF12874.7	1.1e-05	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019408	-	11190	XM_008772567	ENSRNOP00000019408	3730 (aa)	XP_008770789	F1M4Q6
ENSRNOT00000068594	-	11094	-	ENSRNOP00000061590	3698 (aa)	-	F1M547

Gene Model

Click here to download ENSRNOG00000014452's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno04550	Signaling pathways regulating pluripotency of stem cells	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014452's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014452	Zfhx3	100	94.051	ENSG00000140836	ZFHX3	100	93.647	Homo_sapiens
ENSRNOG00000014452	Zfhx3	100	91.752	ENSAMEG00000002197	ZFHX3	100	92.746	Ailuropoda_melanoleuca
ENSRNOG00000014452	Zfhx3	52	63.324	ENSACIG00000000652	zfhx3	99	75.266	Amphilophus_citrinellus
ENSRNOG00000014452	Zfhx3	86	65.037	ENSATEG00000004640	zfhx3	95	64.582	Anabas_testudineus
ENSRNOG00000014452	Zfhx3	95	85.119	ENSAPLG00000002327	ZFHX3	99	85.658	Anas_platyrhynchos
ENSRNOG00000014452	Zfhx3	100	93.011	ENSANAG00000033325	ZFHX3	100	93.333	Aotus_nancymaae
ENSRNOG00000014452	Zfhx3	52	65.226	ENSACLG00000001914	zfhx3	100	63.283	Astatotilapia_calliptera
ENSRNOG00000014452	Zfhx3	61	66.116	ENSAMXG00000004340	zfhx3	100	63.304	Astyanax_mexicanus
ENSRNOG00000014452	Zfhx3	100	91.389	ENSBTAG00000014636	ZFHX3	100	92.304	Bos_taurus
ENSRNOG00000014452	Zfhx3	100	93.733	ENSCJAG00000043080	ZFHX3	100	94.083	Callithrix_jacchus
ENSRNOG00000014452	Zfhx3	100	92.821	ENSCAFG00000020243	ZFHX3	100	92.499	Canis_familiaris
ENSRNOG00000014452	Zfhx3	100	92.968	ENSCAFG00020020336	ZFHX3	100	92.805	Canis_lupus_dingo
ENSRNOG00000014452	Zfhx3	100	91.291	ENSCHIG00000018446	ZFHX3	100	92.185	Capra_hircus
ENSRNOG00000014452	Zfhx3	100	93.136	ENSTSYG00000029930	ZFHX3	100	92.813	Carlito_syrichta
ENSRNOG00000014452	Zfhx3	93	98.305	ENSCAPG00000010889	ZFHX3	99	98.305	Cavia_aperea
ENSRNOG00000014452	Zfhx3	100	92.347	ENSCPOG00000009111	ZFHX3	100	92.059	Cavia_porcellus
ENSRNOG00000014452	Zfhx3	100	93.094	ENSCCAG00000026346	ZFHX3	100	93.634	Cebus_capucinus
ENSRNOG00000014452	Zfhx3	100	93.769	ENSCATG00000022545	ZFHX3	100	93.603	Cercocebus_atys
ENSRNOG00000014452	Zfhx3	100	93.805	ENSCLAG00000007000	ZFHX3	100	93.463	Chinchilla_lanigera
ENSRNOG00000014452	Zfhx3	100	93.190	ENSCSAG00000004171	ZFHX3	100	93.837	Chlorocebus_sabaeus
ENSRNOG00000014452	Zfhx3	100	94.303	ENSCANG00000034216	ZFHX3	100	94.384	Colobus_angolensis_palliatus
ENSRNOG00000014452	Zfhx3	100	96.200	ENSCGRG00001012831	Zfhx3	100	96.200	Cricetulus_griseus_chok1gshd
ENSRNOG00000014452	Zfhx3	100	94.843	ENSCGRG00000001001	Zfhx3	100	94.843	Cricetulus_griseus_crigri
ENSRNOG00000014452	Zfhx3	87	65.007	ENSCSEG00000001762	zfhx3	95	63.162	Cynoglossus_semilaevis
ENSRNOG00000014452	Zfhx3	100	61.426	ENSDARG00000103057	zfhx3	100	61.967	Danio_rerio
ENSRNOG00000014452	Zfhx3	100	92.395	ENSDNOG00000046047	ZFHX3	100	92.126	Dasypus_novemcinctus
ENSRNOG00000014452	Zfhx3	100	93.308	ENSEASG00005021387	ZFHX3	100	93.527	Equus_asinus_asinus
ENSRNOG00000014452	Zfhx3	100	93.308	ENSECAG00000022984	ZFHX3	100	93.948	Equus_caballus
ENSRNOG00000014452	Zfhx3	84	92.425	ENSEEUG00000008705	ZFHX3	92	91.667	Erinaceus_europaeus
ENSRNOG00000014452	Zfhx3	86	66.038	ENSELUG00000014311	zfhx3	100	63.009	Esox_lucius
ENSRNOG00000014452	Zfhx3	100	93.323	ENSFCAG00000023839	ZFHX3	100	93.649	Felis_catus
ENSRNOG00000014452	Zfhx3	96	86.944	ENSFALG00000002706	ZFHX3	98	83.974	Ficedula_albicollis
ENSRNOG00000014452	Zfhx3	100	92.326	ENSFDAG00000015753	ZFHX3	100	91.738	Fukomys_damarensis
ENSRNOG00000014452	Zfhx3	97	62.891	ENSFHEG00000013474	zfhx3	99	74.866	Fundulus_heteroclitus
ENSRNOG00000014452	Zfhx3	100	63.286	ENSGMOG00000002909	zfhx3	100	63.702	Gadus_morhua
ENSRNOG00000014452	Zfhx3	100	85.208	ENSGALG00000000713	ZFHX3	100	86.044	Gallus_gallus
ENSRNOG00000014452	Zfhx3	97	63.656	ENSGAFG00000017278	zfhx3	95	64.094	Gambusia_affinis
ENSRNOG00000014452	Zfhx3	86	64.813	ENSGACG00000015779	zfhx3	100	62.352	Gasterosteus_aculeatus
ENSRNOG00000014452	Zfhx3	66	85.424	ENSGAGG00000002102	ZFHX3	100	86.202	Gopherus_agassizii
ENSRNOG00000014452	Zfhx3	99	93.914	ENSGGOG00000012083	ZFHX3	100	93.853	Gorilla_gorilla
ENSRNOG00000014452	Zfhx3	52	65.325	ENSHBUG00000013200	zfhx3	100	63.283	Haplochromis_burtoni
ENSRNOG00000014452	Zfhx3	100	93.283	ENSHGLG00000012541	ZFHX3	100	92.770	Heterocephalus_glaber_female
ENSRNOG00000014452	Zfhx3	100	92.878	ENSHGLG00100000797	ZFHX3	100	92.393	Heterocephalus_glaber_male
ENSRNOG00000014452	Zfhx3	72	67.416	ENSHCOG00000003135	zfhx3	95	63.475	Hippocampus_comes
ENSRNOG00000014452	Zfhx3	97	64.929	ENSIPUG00000006119	zfhx3	95	65.489	Ictalurus_punctatus
ENSRNOG00000014452	Zfhx3	100	93.846	ENSSTOG00000027206	ZFHX3	100	93.389	Ictidomys_tridecemlineatus
ENSRNOG00000014452	Zfhx3	97	64.127	ENSKMAG00000006781	zfhx3	95	64.271	Kryptolebias_marmoratus
ENSRNOG00000014452	Zfhx3	97	66.623	ENSLOCG00000004206	zfhx3	100	65.105	Lepisosteus_oculatus
ENSRNOG00000014452	Zfhx3	100	92.636	ENSLAFG00000017476	ZFHX3	100	93.308	Loxodonta_africana
ENSRNOG00000014452	Zfhx3	100	94.260	ENSMFAG00000034225	ZFHX3	100	94.316	Macaca_fascicularis
ENSRNOG00000014452	Zfhx3	100	94.179	ENSMMUG00000021041	ZFHX3	100	93.831	Macaca_mulatta
ENSRNOG00000014452	Zfhx3	100	94.154	ENSMNEG00000030137	ZFHX3	100	94.236	Macaca_nemestrina
ENSRNOG00000014452	Zfhx3	100	94.354	ENSMLEG00000042563	ZFHX3	100	94.249	Mandrillus_leucophaeus
ENSRNOG00000014452	Zfhx3	97	63.954	ENSMAMG00000021509	zfhx3	95	64.675	Mastacembelus_armatus
ENSRNOG00000014452	Zfhx3	52	65.127	ENSMZEG00005014216	zfhx3	100	63.232	Maylandia_zebra
ENSRNOG00000014452	Zfhx3	78	87.807	ENSMGAG00000008764	ZFHX3	99	82.261	Meleagris_gallopavo
ENSRNOG00000014452	Zfhx3	100	95.657	ENSMAUG00000000602	Zfhx3	100	95.657	Mesocricetus_auratus
ENSRNOG00000014452	Zfhx3	100	93.324	ENSMICG00000003537	ZFHX3	100	93.432	Microcebus_murinus
ENSRNOG00000014452	Zfhx3	100	95.692	ENSMOCG00000017998	Zfhx3	100	95.692	Microtus_ochrogaster
ENSRNOG00000014452	Zfhx3	97	64.003	ENSMMOG00000016551	zfhx3	95	64.798	Mola_mola
ENSRNOG00000014452	Zfhx3	100	97.323	ENSMUSG00000038872	Zfhx3	100	97.323	Mus_musculus
ENSRNOG00000014452	Zfhx3	100	97.193	MGP_PahariEiJ_G0023139	Zfhx3	100	97.193	Mus_pahari
ENSRNOG00000014452	Zfhx3	100	97.244	MGP_SPRETEiJ_G0032657	Zfhx3	100	97.244	Mus_spretus
ENSRNOG00000014452	Zfhx3	57	93.537	ENSMPUG00000007747	ZFHX3	100	92.705	Mustela_putorius_furo
ENSRNOG00000014452	Zfhx3	100	91.849	ENSMLUG00000016100	ZFHX3	100	92.663	Myotis_lucifugus
ENSRNOG00000014452	Zfhx3	100	91.874	ENSNGAG00000001724	Zfhx3	100	92.252	Nannospalax_galili
ENSRNOG00000014452	Zfhx3	52	65.191	ENSNBRG00000010822	zfhx3	100	62.949	Neolamprologus_brichardi
ENSRNOG00000014452	Zfhx3	88	97.436	ENSNLEG00000032567	ZFHX3	99	97.436	Nomascus_leucogenys
ENSRNOG00000014452	Zfhx3	100	91.860	ENSODEG00000014257	ZFHX3	100	91.273	Octodon_degus
ENSRNOG00000014452	Zfhx3	93	63.887	ENSONIG00000005914	zfhx3	98	72.830	Oreochromis_niloticus
ENSRNOG00000014452	Zfhx3	86	90.411	ENSOANG00000005084	ZFHX3	100	89.579	Ornithorhynchus_anatinus
ENSRNOG00000014452	Zfhx3	87	92.724	ENSOCUG00000017910	-	99	93.412	Oryctolagus_cuniculus
ENSRNOG00000014452	Zfhx3	82	66.286	ENSORLG00000007874	zfhx3	86	64.864	Oryzias_latipes
ENSRNOG00000014452	Zfhx3	97	63.613	ENSORLG00020009729	zfhx3	86	64.956	Oryzias_latipes_hni
ENSRNOG00000014452	Zfhx3	97	63.282	ENSORLG00015007912	zfhx3	86	64.659	Oryzias_latipes_hsok
ENSRNOG00000014452	Zfhx3	97	63.344	ENSOMEG00000001800	zfhx3	95	63.833	Oryzias_melastigma
ENSRNOG00000014452	Zfhx3	100	92.549	ENSPPRG00000005184	ZFHX3	100	93.119	Panthera_pardus
ENSRNOG00000014452	Zfhx3	100	94.067	ENSPTRG00000008340	ZFHX3	100	93.959	Pan_troglodytes
ENSRNOG00000014452	Zfhx3	100	93.910	ENSPANG00000010456	ZFHX3	100	94.235	Papio_anubis
ENSRNOG00000014452	Zfhx3	90	74.900	ENSPKIG00000009598	zfhx3	93	65.690	Paramormyrops_kingsleyae
ENSRNOG00000014452	Zfhx3	84	64.623	ENSPKIG00000001525	-	95	63.020	Paramormyrops_kingsleyae
ENSRNOG00000014452	Zfhx3	82	66.218	ENSPMGG00000006062	zfhx3	98	71.509	Periophthalmus_magnuspinnatus
ENSRNOG00000014452	Zfhx3	100	96.276	ENSPEMG00000010630	Zfhx3	100	96.276	Peromyscus_maniculatus_bairdii
ENSRNOG00000014452	Zfhx3	97	63.519	ENSPFOG00000001702	zfhx3	95	64.101	Poecilia_formosa
ENSRNOG00000014452	Zfhx3	97	63.918	ENSPLAG00000018955	zfhx3	95	64.291	Poecilia_latipinna
ENSRNOG00000014452	Zfhx3	97	63.565	ENSPMEG00000022333	zfhx3	100	62.305	Poecilia_mexicana
ENSRNOG00000014452	Zfhx3	86	94.149	ENSPPYG00000007513	ZFHX3	100	94.464	Pongo_abelii
ENSRNOG00000014452	Zfhx3	87	91.166	ENSPCAG00000010600	ZFHX3	99	91.760	Procavia_capensis
ENSRNOG00000014452	Zfhx3	100	93.403	ENSPCOG00000025382	ZFHX3	100	93.538	Propithecus_coquereli
ENSRNOG00000014452	Zfhx3	96	91.850	ENSPVAG00000006664	ZFHX3	96	92.070	Pteropus_vampyrus
ENSRNOG00000014452	Zfhx3	52	64.691	ENSPNYG00000013409	zfhx3	100	63.073	Pundamilia_nyererei
ENSRNOG00000014452	Zfhx3	100	93.117	ENSRBIG00000031579	ZFHX3	100	93.036	Rhinopithecus_bieti
ENSRNOG00000014452	Zfhx3	100	94.078	ENSRROG00000039904	ZFHX3	100	93.997	Rhinopithecus_roxellana
ENSRNOG00000014452	Zfhx3	91	93.105	ENSSBOG00000034332	ZFHX3	96	93.312	Saimiri_boliviensis_boliviensis
ENSRNOG00000014452	Zfhx3	97	64.391	ENSSFOG00015014986	zfhx3	88	72.595	Scleropages_formosus
ENSRNOG00000014452	Zfhx3	84	65.933	ENSSFOG00015019511	zfhx3	98	63.507	Scleropages_formosus
ENSRNOG00000014452	Zfhx3	97	64.201	ENSSPAG00000002113	zfhx3	100	63.264	Stegastes_partitus
ENSRNOG00000014452	Zfhx3	100	92.740	ENSSSCG00000002752	ZFHX3	100	92.209	Sus_scrofa
ENSRNOG00000014452	Zfhx3	96	84.302	ENSTGUG00000008190	ZFHX3	96	85.191	Taeniopygia_guttata
ENSRNOG00000014452	Zfhx3	52	63.222	ENSTRUG00000017601	zfhx3	95	63.773	Takifugu_rubripes
ENSRNOG00000014452	Zfhx3	100	92.936	ENSVVUG00000017344	ZFHX3	100	92.534	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000122	negative regulation of transcription by RNA polymerase II	21873635.	IBA	Process
GO:0000122	negative regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	21873635.	IBA	Function
GO:0000978	RNA polymerase II proximal promoter sequence-specific DNA binding	-	ISO	Function
GO:0003674	molecular_function	-	ND	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	16251211.	IDA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005667	transcription factor complex	-	IEA	Component
GO:0005667	transcription factor complex	-	ISO	Component
GO:0005737	cytoplasm	16251211.	IDA	Component
GO:0005737	cytoplasm	-	ISO	Component
GO:0007050	cell cycle arrest	16251211.	IEP	Process
GO:0007420	brain development	21873635.	IBA	Process
GO:0007420	brain development	12926016.	IEP	Process
GO:0008270	zinc ion binding	-	IEA	Function
GO:0016604	nuclear body	-	IEA	Component
GO:0016604	nuclear body	-	ISO	Component
GO:0019899	enzyme binding	-	IEA	Function
GO:0019899	enzyme binding	-	ISO	Function
GO:0032922	circadian regulation of gene expression	-	ISO	Process
GO:0044212	transcription regulatory region DNA binding	21873635.	IBA	Function
GO:0044212	transcription regulatory region DNA binding	-	ISO	Function
GO:0045662	negative regulation of myoblast differentiation	-	ISO	Process
GO:0045663	positive regulation of myoblast differentiation	-	ISO	Process
GO:0045664	regulation of neuron differentiation	21873635.	IBA	Process
GO:0045664	regulation of neuron differentiation	16251211.	IEP	Process
GO:0045785	positive regulation of cell adhesion	-	ISO	Process
GO:0045892	negative regulation of transcription, DNA-templated	-	ISO	Process
GO:0045893	positive regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0045893	positive regulation of transcription, DNA-templated	-	ISO	Process
GO:0045944	positive regulation of transcription by RNA polymerase II	-	ISO	Process
GO:0071559	response to transforming growth factor beta	-	IEA	Process
GO:0071559	response to transforming growth factor beta	-	ISO	Process
GO:1904059	regulation of locomotor rhythm	-	ISO	Process