EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014562 (Gene tree)
Gene ID: 64200
Gene Symbol: Hnrnpf
Alias: Hnrpf|MGC125106
Full Name: heterogeneous nuclear ribonucleoprotein F
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 21690 bases
Position: chr4:149957206-149978895
Accession: 620366
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019529	zf-RNPHF	PF08080.12	2.8e-22	1	1
ENSRNOP00000068652	zf-RNPHF	PF08080.12	2.8e-22	1	1
ENSRNOP00000069655	zf-RNPHF	PF08080.12	2.8e-22	1	1
ENSRNOP00000019529	RRM_1	PF00076.22	1e-28	1	2
ENSRNOP00000019529	RRM_1	PF00076.22	1e-28	2	2
ENSRNOP00000068652	RRM_1	PF00076.22	1e-28	1	2
ENSRNOP00000068652	RRM_1	PF00076.22	1e-28	2	2
ENSRNOP00000069655	RRM_1	PF00076.22	1e-28	1	2
ENSRNOP00000069655	RRM_1	PF00076.22	1e-28	2	2

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000083843	-	2144	XM_017592869	ENSRNOP00000068652	415 (aa)	XP_017448358	Q794E4
ENSRNOT00000019529	-	2187	XM_017592871	ENSRNOP00000019529	415 (aa)	XP_017448359	Q794E4
ENSRNOT00000091765	-	2229	XM_008763262	ENSRNOP00000069655	415 (aa)	XP_008761484	Q794E4

Gene Model

Click here to download ENSRNOG00000014562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014562's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014562	Hnrnpf	87	42.033	ENSRNOG00000003392	Grsf1	88	42.033
ENSRNOG00000014562	Hnrnpf	99	74.576	ENSRNOG00000003399	Hnrnph1	97	73.793
ENSRNOG00000014562	Hnrnpf	57	71.901	ENSRNOG00000048193	Hnrnph3	97	58.232
ENSRNOG00000014562	Hnrnpf	100	72.414	ENSRNOG00000011661	Hnrnph2	97	72.414

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSG00000169813	HNRNPF	100	98.072	Homo_sapiens
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSAMEG00000018983	HNRNPF	100	97.349	Ailuropoda_melanoleuca
ENSRNOG00000014562	Hnrnpf	89	82.703	ENSANAG00000033452	-	89	82.703	Aotus_nancymaae
ENSRNOG00000014562	Hnrnpf	100	95.422	ENSANAG00000033285	-	100	95.422	Aotus_nancymaae
ENSRNOG00000014562	Hnrnpf	100	79.714	ENSBTAG00000020513	-	100	79.714	Bos_taurus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSBTAG00000008853	HNRNPF	100	97.349	Bos_taurus
ENSRNOG00000014562	Hnrnpf	100	98.554	ENSCJAG00000008291	HNRNPF	100	98.554	Callithrix_jacchus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSCAFG00000007044	HNRNPF	100	97.349	Canis_familiaris
ENSRNOG00000014562	Hnrnpf	97	72.616	ENSCHIG00000022971	-	99	72.616	Capra_hircus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSCHIG00000006714	HNRNPF	100	97.349	Capra_hircus
ENSRNOG00000014562	Hnrnpf	100	83.173	ENSTSYG00000002112	-	100	83.173	Carlito_syrichta
ENSRNOG00000014562	Hnrnpf	100	97.831	ENSTSYG00000030439	-	100	97.831	Carlito_syrichta
ENSRNOG00000014562	Hnrnpf	99	98.792	ENSCAPG00000011521	HNRNPF	99	98.792	Cavia_aperea
ENSRNOG00000014562	Hnrnpf	99	98.792	ENSCPOG00000003678	HNRNPF	99	98.792	Cavia_porcellus
ENSRNOG00000014562	Hnrnpf	100	79.759	ENSCCAG00000028687	-	100	79.759	Cebus_capucinus
ENSRNOG00000014562	Hnrnpf	100	98.313	ENSCCAG00000031457	-	100	98.313	Cebus_capucinus
ENSRNOG00000014562	Hnrnpf	99	98.792	ENSCLAG00000005161	HNRNPF	99	98.792	Chinchilla_lanigera
ENSRNOG00000014562	Hnrnpf	100	96.627	ENSCANG00000003086	-	100	96.627	Colobus_angolensis_palliatus
ENSRNOG00000014562	Hnrnpf	100	100.000	ENSCGRG00001016276	Hnrnpf	100	100.000	Cricetulus_griseus_chok1gshd
ENSRNOG00000014562	Hnrnpf	94	75.128	ENSCGRG00001016206	-	88	75.128	Cricetulus_griseus_chok1gshd
ENSRNOG00000014562	Hnrnpf	100	93.253	ENSDNOG00000030849	-	100	93.253	Dasypus_novemcinctus
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSDORG00000024298	-	100	98.072	Dipodomys_ordii
ENSRNOG00000014562	Hnrnpf	100	95.181	ENSDORG00000024936	-	100	95.181	Dipodomys_ordii
ENSRNOG00000014562	Hnrnpf	100	91.325	ENSDORG00000008260	-	100	91.325	Dipodomys_ordii
ENSRNOG00000014562	Hnrnpf	100	89.639	ENSDORG00000005431	-	100	89.639	Dipodomys_ordii
ENSRNOG00000014562	Hnrnpf	100	97.590	ENSEASG00005006903	HNRNPF	100	97.590	Equus_asinus_asinus
ENSRNOG00000014562	Hnrnpf	100	93.735	ENSECAG00000003229	HNRNPF	100	93.735	Equus_caballus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSFCAG00000028219	-	100	97.349	Felis_catus
ENSRNOG00000014562	Hnrnpf	99	81.159	ENSFDAG00000015308	-	99	81.159	Fukomys_damarensis
ENSRNOG00000014562	Hnrnpf	99	89.313	ENSFDAG00000007858	-	98	89.313	Fukomys_damarensis
ENSRNOG00000014562	Hnrnpf	99	98.792	ENSFDAG00000011431	-	99	98.792	Fukomys_damarensis
ENSRNOG00000014562	Hnrnpf	90	97.867	ENSGGOG00000010867	HNRNPF	93	97.867	Gorilla_gorilla
ENSRNOG00000014562	Hnrnpf	99	88.406	ENSHGLG00000017607	-	100	88.406	Heterocephalus_glaber_female
ENSRNOG00000014562	Hnrnpf	98	93.883	ENSHGLG00000014139	-	97	93.883	Heterocephalus_glaber_female
ENSRNOG00000014562	Hnrnpf	100	94.217	ENSHGLG00000010276	-	100	94.217	Heterocephalus_glaber_female
ENSRNOG00000014562	Hnrnpf	99	98.551	ENSHGLG00000000147	-	99	98.551	Heterocephalus_glaber_female
ENSRNOG00000014562	Hnrnpf	99	97.525	ENSHGLG00100020825	-	100	97.525	Heterocephalus_glaber_male
ENSRNOG00000014562	Hnrnpf	99	90.657	ENSHGLG00100019910	-	100	90.657	Heterocephalus_glaber_male
ENSRNOG00000014562	Hnrnpf	99	94.444	ENSHGLG00100019572	-	99	94.444	Heterocephalus_glaber_male
ENSRNOG00000014562	Hnrnpf	91	86.702	ENSHGLG00100010905	-	97	86.702	Heterocephalus_glaber_male
ENSRNOG00000014562	Hnrnpf	99	93.961	ENSHGLG00100019558	-	100	93.961	Heterocephalus_glaber_male
ENSRNOG00000014562	Hnrnpf	100	98.795	ENSSTOG00000025560	-	100	98.795	Ictidomys_tridecemlineatus
ENSRNOG00000014562	Hnrnpf	100	87.981	ENSSTOG00000022853	-	100	87.981	Ictidomys_tridecemlineatus
ENSRNOG00000014562	Hnrnpf	100	83.213	ENSSTOG00000023820	-	100	83.213	Ictidomys_tridecemlineatus
ENSRNOG00000014562	Hnrnpf	98	95.430	ENSJJAG00000014334	-	99	95.430	Jaculus_jaculus
ENSRNOG00000014562	Hnrnpf	100	82.651	ENSJJAG00000022288	-	100	82.651	Jaculus_jaculus
ENSRNOG00000014562	Hnrnpf	100	74.402	ENSJJAG00000000554	-	100	74.402	Jaculus_jaculus
ENSRNOG00000014562	Hnrnpf	100	64.578	ENSJJAG00000014424	-	100	64.578	Jaculus_jaculus
ENSRNOG00000014562	Hnrnpf	100	89.157	ENSJJAG00000017385	-	100	89.157	Jaculus_jaculus
ENSRNOG00000014562	Hnrnpf	99	95.904	ENSLAFG00000000424	HNRNPF	99	95.904	Loxodonta_africana
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSMFAG00000021184	HNRNPF	100	98.072	Macaca_fascicularis
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSMMUG00000020982	HNRNPF	100	98.072	Macaca_mulatta
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSMLEG00000023515	HNRNPF	100	98.072	Mandrillus_leucophaeus
ENSRNOG00000014562	Hnrnpf	100	100.000	ENSMAUG00000007892	Hnrnpf	100	100.000	Mesocricetus_auratus
ENSRNOG00000014562	Hnrnpf	99	79.469	ENSMICG00000043739	-	99	79.469	Microcebus_murinus
ENSRNOG00000014562	Hnrnpf	99	79.335	ENSMICG00000044171	-	99	79.335	Microcebus_murinus
ENSRNOG00000014562	Hnrnpf	100	98.795	ENSMOCG00000014915	Hnrnpf	100	98.795	Microtus_ochrogaster
ENSRNOG00000014562	Hnrnpf	100	100.000	ENSMUSG00000042079	Hnrnpf	100	100.000	Mus_musculus
ENSRNOG00000014562	Hnrnpf	100	98.795	MGP_PahariEiJ_G0026903	-	100	98.795	Mus_pahari
ENSRNOG00000014562	Hnrnpf	99	97.494	ENSMPUG00000017283	HNRNPF	99	97.494	Mustela_putorius_furo
ENSRNOG00000014562	Hnrnpf	100	95.433	ENSMLUG00000007261	HNRNPF	100	95.433	Myotis_lucifugus
ENSRNOG00000014562	Hnrnpf	100	99.518	ENSNGAG00000010409	-	100	99.518	Nannospalax_galili
ENSRNOG00000014562	Hnrnpf	100	81.205	ENSNGAG00000014079	-	100	81.205	Nannospalax_galili
ENSRNOG00000014562	Hnrnpf	100	71.325	ENSNGAG00000009482	-	100	71.325	Nannospalax_galili
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSNLEG00000019098	HNRNPF	100	98.072	Nomascus_leucogenys
ENSRNOG00000014562	Hnrnpf	99	91.748	ENSODEG00000002359	-	99	91.748	Octodon_degus
ENSRNOG00000014562	Hnrnpf	99	98.792	ENSODEG00000019266	-	99	98.792	Octodon_degus
ENSRNOG00000014562	Hnrnpf	100	92.771	ENSOCUG00000024604	-	100	92.771	Oryctolagus_cuniculus
ENSRNOG00000014562	Hnrnpf	100	98.313	ENSOCUG00000024719	-	100	98.313	Oryctolagus_cuniculus
ENSRNOG00000014562	Hnrnpf	100	93.735	ENSOGAG00000030480	-	100	93.735	Otolemur_garnettii
ENSRNOG00000014562	Hnrnpf	99	91.084	ENSOGAG00000013734	-	99	91.084	Otolemur_garnettii
ENSRNOG00000014562	Hnrnpf	100	79.759	ENSOARG00000016658	-	100	79.759	Ovis_aries
ENSRNOG00000014562	Hnrnpf	99	98.365	ENSOARG00000003995	HNRNPF	92	98.365	Ovis_aries
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSPPRG00000021222	HNRNPF	100	97.349	Panthera_pardus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSPTIG00000009644	HNRNPF	100	97.349	Panthera_tigris_altaica
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSPTRG00000002446	HNRNPF	100	98.072	Pan_troglodytes
ENSRNOG00000014562	Hnrnpf	100	97.831	ENSPANG00000002212	HNRNPF	100	97.831	Papio_anubis
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSPPYG00000002212	HNRNPF	100	98.072	Pongo_abelii
ENSRNOG00000014562	Hnrnpf	100	95.192	ENSPCAG00000013169	HNRNPF	100	95.192	Procavia_capensis
ENSRNOG00000014562	Hnrnpf	100	96.145	ENSPVAG00000011646	HNRNPF	100	96.145	Pteropus_vampyrus
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSRROG00000001235	HNRNPF	100	98.072	Rhinopithecus_roxellana
ENSRNOG00000014562	Hnrnpf	100	98.554	ENSSBOG00000018361	HNRNPF	100	98.554	Saimiri_boliviensis_boliviensis
ENSRNOG00000014562	Hnrnpf	100	98.072	ENSSARG00000010059	HNRNPF	100	98.072	Sorex_araneus
ENSRNOG00000014562	Hnrnpf	100	57.692	ENSSSCG00000024956	-	96	57.692	Sus_scrofa
ENSRNOG00000014562	Hnrnpf	100	96.627	ENSSSCG00000010203	-	100	96.627	Sus_scrofa
ENSRNOG00000014562	Hnrnpf	98	71.605	ENSTBEG00000016094	HNRNPF	100	71.605	Tupaia_belangeri
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSUAMG00000000455	HNRNPF	100	97.349	Ursus_americanus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSUMAG00000016485	HNRNPF	100	97.349	Ursus_maritimus
ENSRNOG00000014562	Hnrnpf	100	97.349	ENSVVUG00000021261	HNRNPF	100	97.349	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003727	single-stranded RNA binding	-	ISO	Function
GO:0003727	single-stranded RNA binding	-	ISS	Function
GO:0005634	nucleus	10471789.	IDA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0008134	transcription factor binding	16837467.	IPI	Function
GO:0008380	RNA splicing	-	IEA	Process
GO:0017025	TBP-class protein binding	10471789.	IPI	Function
GO:0043484	regulation of RNA splicing	-	ISO	Process
GO:0043484	regulation of RNA splicing	-	ISS	Process
GO:0071013	catalytic step 2 spliceosome	-	IEA	Component
GO:0071013	catalytic step 2 spliceosome	-	ISO	Component