EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014575 (Gene tree)
Gene ID: 295395
Gene Symbol: Rtca
Alias: MGC94866|Rtcd1
Full Name: RNA 3'-terminal phosphate cyclase
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 21470 bases
Position: chr2:219537206-219558675
Accession: 1303111
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020149	RTC	PF01137.21	2.4e-87	1	1
ENSRNOP00000020149	RTC_insert	PF05189.13	3e-26	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020149	-	1547	XM_008761456	ENSRNOP00000020149	366 (aa)	-	Q68FS8

Gene Model

Click here to download ENSRNOG00000014575's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014575's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014575	Rtca	100	90.984	ENSG00000137996	RTCA	100	93.878	Homo_sapiens
ENSRNOG00000014575	Rtca	100	69.672	ENSAPOG00000001345	rtca	99	69.672	Acanthochromis_polyacanthus
ENSRNOG00000014575	Rtca	73	90.706	ENSAMEG00000008855	RTCA	100	90.706	Ailuropoda_melanoleuca
ENSRNOG00000014575	Rtca	100	69.399	ENSACIG00000019643	rtca	100	69.399	Amphilophus_citrinellus
ENSRNOG00000014575	Rtca	100	69.672	ENSAOCG00000014979	rtca	99	69.672	Amphiprion_ocellaris
ENSRNOG00000014575	Rtca	100	69.672	ENSAPEG00000006945	rtca	99	69.672	Amphiprion_percula
ENSRNOG00000014575	Rtca	100	67.760	ENSATEG00000006315	rtca	100	67.760	Anabas_testudineus
ENSRNOG00000014575	Rtca	96	79.944	ENSAPLG00000015430	RTCA	100	79.944	Anas_platyrhynchos
ENSRNOG00000014575	Rtca	100	90.437	ENSANAG00000025446	RTCA	100	90.437	Aotus_nancymaae
ENSRNOG00000014575	Rtca	100	68.579	ENSACLG00000020770	rtca	99	68.579	Astatotilapia_calliptera
ENSRNOG00000014575	Rtca	98	71.111	ENSAMXG00000043271	rtca	98	71.111	Astyanax_mexicanus
ENSRNOG00000014575	Rtca	100	93.169	ENSBTAG00000006321	RTCA	100	93.169	Bos_taurus
ENSRNOG00000014575	Rtca	100	90.437	ENSCJAG00000003398	RTCA	100	90.437	Callithrix_jacchus
ENSRNOG00000014575	Rtca	100	91.803	ENSCAFG00000020010	RTCA	68	91.803	Canis_familiaris
ENSRNOG00000014575	Rtca	100	91.803	ENSCAFG00020011528	RTCA	57	91.803	Canis_lupus_dingo
ENSRNOG00000014575	Rtca	100	92.896	ENSCHIG00000018937	RTCA	100	92.896	Capra_hircus
ENSRNOG00000014575	Rtca	100	91.257	ENSTSYG00000011305	RTCA	100	91.257	Carlito_syrichta
ENSRNOG00000014575	Rtca	100	90.710	ENSCCAG00000021844	RTCA	100	90.710	Cebus_capucinus
ENSRNOG00000014575	Rtca	100	88.127	ENSCATG00000019364	RTCA	100	90.615	Cercocebus_atys
ENSRNOG00000014575	Rtca	87	91.483	ENSCLAG00000006125	RTCA	100	91.483	Chinchilla_lanigera
ENSRNOG00000014575	Rtca	100	91.530	ENSCSAG00000001509	RTCA	100	91.530	Chlorocebus_sabaeus
ENSRNOG00000014575	Rtca	100	90.984	ENSCHOG00000005211	RTCA	100	90.984	Choloepus_hoffmanni
ENSRNOG00000014575	Rtca	100	82.514	ENSCPBG00000026658	RTCA	100	82.514	Chrysemys_picta_bellii
ENSRNOG00000014575	Rtca	98	55.000	ENSCING00000007875	-	98	55.000	Ciona_intestinalis
ENSRNOG00000014575	Rtca	98	54.167	ENSCSAVG00000007269	-	98	54.167	Ciona_savignyi
ENSRNOG00000014575	Rtca	100	91.257	ENSCANG00000040106	RTCA	100	91.257	Colobus_angolensis_palliatus
ENSRNOG00000014575	Rtca	73	95.167	ENSCGRG00001013163	Rtca	85	95.167	Cricetulus_griseus_chok1gshd
ENSRNOG00000014575	Rtca	98	68.056	ENSCSEG00000000530	rtca	96	68.056	Cynoglossus_semilaevis
ENSRNOG00000014575	Rtca	100	57.923	ENSCVAG00000021809	rtca	100	57.923	Cyprinodon_variegatus
ENSRNOG00000014575	Rtca	100	70.492	ENSDARG00000002215	rtca	100	70.492	Danio_rerio
ENSRNOG00000014575	Rtca	100	90.437	ENSDNOG00000000456	RTCA	100	90.437	Dasypus_novemcinctus
ENSRNOG00000014575	Rtca	100	93.989	ENSDORG00000005448	Rtca	100	93.989	Dipodomys_ordii
ENSRNOG00000014575	Rtca	98	38.547	FBgn0025630	Rtca	98	38.547	Drosophila_melanogaster
ENSRNOG00000014575	Rtca	95	55.367	ENSEBUG00000008556	rtca	97	55.367	Eptatretus_burgeri
ENSRNOG00000014575	Rtca	100	91.257	ENSEASG00005015926	RTCA	100	91.257	Equus_asinus_asinus
ENSRNOG00000014575	Rtca	100	91.257	ENSECAG00000019831	RTCA	100	91.257	Equus_caballus
ENSRNOG00000014575	Rtca	91	81.792	ENSEEUG00000001165	RTCA	100	81.792	Erinaceus_europaeus
ENSRNOG00000014575	Rtca	99	70.637	ENSELUG00000003741	rtca	99	70.637	Esox_lucius
ENSRNOG00000014575	Rtca	100	92.350	ENSFCAG00000024460	RTCA	100	92.350	Felis_catus
ENSRNOG00000014575	Rtca	93	82.059	ENSFALG00000002443	RTCA	91	82.059	Ficedula_albicollis
ENSRNOG00000014575	Rtca	98	70.994	ENSFDAG00000016084	-	100	70.994	Fukomys_damarensis
ENSRNOG00000014575	Rtca	100	90.710	ENSFDAG00000012070	-	100	90.710	Fukomys_damarensis
ENSRNOG00000014575	Rtca	72	59.542	ENSFHEG00000002868	rtca	90	68.095	Fundulus_heteroclitus
ENSRNOG00000014575	Rtca	100	68.033	ENSGMOG00000013264	rtca	100	68.033	Gadus_morhua
ENSRNOG00000014575	Rtca	100	82.787	ENSGALG00000005277	RTCA	100	82.787	Gallus_gallus
ENSRNOG00000014575	Rtca	100	69.672	ENSGAFG00000011853	rtca	99	69.672	Gambusia_affinis
ENSRNOG00000014575	Rtca	100	68.579	ENSGACG00000013497	rtca	100	68.579	Gasterosteus_aculeatus
ENSRNOG00000014575	Rtca	80	83.618	ENSGAGG00000023306	RTCA	100	83.618	Gopherus_agassizii
ENSRNOG00000014575	Rtca	100	91.530	ENSGGOG00000009546	-	100	91.530	Gorilla_gorilla
ENSRNOG00000014575	Rtca	100	90.164	ENSGGOG00000044018	-	100	90.164	Gorilla_gorilla
ENSRNOG00000014575	Rtca	100	68.306	ENSHBUG00000002114	rtca	99	68.306	Haplochromis_burtoni
ENSRNOG00000014575	Rtca	100	90.710	ENSHGLG00000002617	RTCA	100	90.710	Heterocephalus_glaber_female
ENSRNOG00000014575	Rtca	100	90.710	ENSHGLG00100006056	RTCA	100	90.710	Heterocephalus_glaber_male
ENSRNOG00000014575	Rtca	100	63.661	ENSHCOG00000020628	rtca	89	63.661	Hippocampus_comes
ENSRNOG00000014575	Rtca	100	70.765	ENSIPUG00000024803	rtca	100	70.765	Ictalurus_punctatus
ENSRNOG00000014575	Rtca	100	84.153	ENSSTOG00000013528	-	100	84.153	Ictidomys_tridecemlineatus
ENSRNOG00000014575	Rtca	100	80.381	ENSSTOG00000033099	-	100	80.381	Ictidomys_tridecemlineatus
ENSRNOG00000014575	Rtca	100	67.760	ENSJJAG00000016178	Rtca	100	67.760	Jaculus_jaculus
ENSRNOG00000014575	Rtca	100	71.585	ENSKMAG00000006651	rtca	99	71.585	Kryptolebias_marmoratus
ENSRNOG00000014575	Rtca	99	68.698	ENSLBEG00000028971	rtca	99	68.698	Labrus_bergylta
ENSRNOG00000014575	Rtca	88	68.224	ENSLBEG00000002448	-	99	68.224	Labrus_bergylta
ENSRNOG00000014575	Rtca	100	76.776	ENSLACG00000013666	RTCA	100	76.776	Latimeria_chalumnae
ENSRNOG00000014575	Rtca	100	71.585	ENSLOCG00000000093	rtca	99	71.585	Lepisosteus_oculatus
ENSRNOG00000014575	Rtca	100	90.710	ENSLAFG00000001473	RTCA	100	90.710	Loxodonta_africana
ENSRNOG00000014575	Rtca	100	91.530	ENSMFAG00000034132	RTCA	100	91.530	Macaca_fascicularis
ENSRNOG00000014575	Rtca	100	90.984	ENSMMUG00000019105	RTCA	100	90.984	Macaca_mulatta
ENSRNOG00000014575	Rtca	84	90.939	ENSMNEG00000037163	RTCA	100	90.939	Macaca_nemestrina
ENSRNOG00000014575	Rtca	100	75.137	ENSMLEG00000042151	RTCA	100	75.137	Mandrillus_leucophaeus
ENSRNOG00000014575	Rtca	100	70.492	ENSMAMG00000016536	rtca	100	70.492	Mastacembelus_armatus
ENSRNOG00000014575	Rtca	100	68.579	ENSMZEG00005017945	rtca	99	68.579	Maylandia_zebra
ENSRNOG00000014575	Rtca	87	81.191	ENSMGAG00000006892	RTCA	99	81.191	Meleagris_gallopavo
ENSRNOG00000014575	Rtca	100	96.175	ENSMAUG00000008488	Rtca	100	96.175	Mesocricetus_auratus
ENSRNOG00000014575	Rtca	84	91.909	ENSMICG00000008643	RTCA	100	91.909	Microcebus_murinus
ENSRNOG00000014575	Rtca	100	95.355	ENSMOCG00000016660	Rtca	100	95.355	Microtus_ochrogaster
ENSRNOG00000014575	Rtca	84	70.874	ENSMMOG00000007750	rtca	100	70.874	Mola_mola
ENSRNOG00000014575	Rtca	100	87.158	ENSMODG00000003557	RTCA	100	87.158	Monodelphis_domestica
ENSRNOG00000014575	Rtca	100	70.492	ENSMALG00000020844	rtca	100	70.492	Monopterus_albus
ENSRNOG00000014575	Rtca	100	98.361	MGP_CAROLIEiJ_G0025565	Rtca	100	98.592	Mus_caroli
ENSRNOG00000014575	Rtca	100	97.814	ENSMUSG00000000339	Rtca	100	98.592	Mus_musculus
ENSRNOG00000014575	Rtca	100	98.087	MGP_PahariEiJ_G0027011	Rtca	100	98.087	Mus_pahari
ENSRNOG00000014575	Rtca	100	98.087	MGP_SPRETEiJ_G0026515	Rtca	100	98.087	Mus_spretus
ENSRNOG00000014575	Rtca	100	92.077	ENSMPUG00000012119	RTCA	100	92.077	Mustela_putorius_furo
ENSRNOG00000014575	Rtca	100	86.376	ENSMLUG00000009922	RTCA	100	86.376	Myotis_lucifugus
ENSRNOG00000014575	Rtca	100	94.262	ENSNGAG00000011540	Rtca	99	94.262	Nannospalax_galili
ENSRNOG00000014575	Rtca	100	68.579	ENSNBRG00000003062	rtca	99	68.579	Neolamprologus_brichardi
ENSRNOG00000014575	Rtca	100	90.984	ENSNLEG00000031426	RTCA	100	90.984	Nomascus_leucogenys
ENSRNOG00000014575	Rtca	58	86.585	ENSMEUG00000010030	-	77	72.727	Notamacropus_eugenii
ENSRNOG00000014575	Rtca	73	88.476	ENSOPRG00000012092	RTCA	71	88.476	Ochotona_princeps
ENSRNOG00000014575	Rtca	95	91.092	ENSODEG00000006990	RTCA	96	91.168	Octodon_degus
ENSRNOG00000014575	Rtca	100	68.306	ENSONIG00000007753	rtca	99	68.306	Oreochromis_niloticus
ENSRNOG00000014575	Rtca	87	84.543	ENSOANG00000012055	RTCA	98	84.543	Ornithorhynchus_anatinus
ENSRNOG00000014575	Rtca	100	92.077	ENSOCUG00000014247	RTCA	100	92.077	Oryctolagus_cuniculus
ENSRNOG00000014575	Rtca	100	69.126	ENSORLG00000013605	rtca	100	69.126	Oryzias_latipes
ENSRNOG00000014575	Rtca	100	69.126	ENSORLG00020001904	rtca	100	69.126	Oryzias_latipes_hni
ENSRNOG00000014575	Rtca	100	69.399	ENSORLG00015021064	rtca	100	69.399	Oryzias_latipes_hsok
ENSRNOG00000014575	Rtca	100	69.945	ENSOMEG00000000756	rtca	100	69.945	Oryzias_melastigma
ENSRNOG00000014575	Rtca	100	82.240	ENSOGAG00000005627	RTCA	100	82.240	Otolemur_garnettii
ENSRNOG00000014575	Rtca	87	91.824	ENSOARG00000018122	RTCA	100	91.824	Ovis_aries
ENSRNOG00000014575	Rtca	100	88.127	ENSPPAG00000035119	RTCA	100	90.939	Pan_paniscus
ENSRNOG00000014575	Rtca	100	92.077	ENSPPRG00000000350	RTCA	100	92.077	Panthera_pardus
ENSRNOG00000014575	Rtca	100	92.077	ENSPTIG00000012816	RTCA	100	92.077	Panthera_tigris_altaica
ENSRNOG00000014575	Rtca	100	87.599	ENSPTRG00000001004	RTCA	100	90.291	Pan_troglodytes
ENSRNOG00000014575	Rtca	100	91.530	ENSPANG00000000346	RTCA	100	91.530	Papio_anubis
ENSRNOG00000014575	Rtca	100	71.858	ENSPKIG00000001653	rtca	100	71.858	Paramormyrops_kingsleyae
ENSRNOG00000014575	Rtca	100	83.333	ENSPSIG00000011408	RTCA	100	83.333	Pelodiscus_sinensis
ENSRNOG00000014575	Rtca	100	96.448	ENSPEMG00000018582	Rtca	100	96.448	Peromyscus_maniculatus_bairdii
ENSRNOG00000014575	Rtca	99	58.470	ENSPMAG00000009110	rtca	99	58.470	Petromyzon_marinus
ENSRNOG00000014575	Rtca	100	87.705	ENSPCIG00000007684	RTCA	100	87.705	Phascolarctos_cinereus
ENSRNOG00000014575	Rtca	100	70.027	ENSPFOG00000004824	rtca	100	70.027	Poecilia_formosa
ENSRNOG00000014575	Rtca	100	70.219	ENSPLAG00000011753	rtca	99	70.219	Poecilia_latipinna
ENSRNOG00000014575	Rtca	100	70.219	ENSPMEG00000020469	rtca	99	70.219	Poecilia_mexicana
ENSRNOG00000014575	Rtca	100	71.038	ENSPREG00000001365	rtca	99	71.038	Poecilia_reticulata
ENSRNOG00000014575	Rtca	100	90.984	ENSPPYG00000001115	RTCA	100	90.984	Pongo_abelii
ENSRNOG00000014575	Rtca	100	87.158	ENSPCAG00000005076	RTCA	100	87.158	Procavia_capensis
ENSRNOG00000014575	Rtca	100	92.350	ENSPCOG00000005603	RTCA	100	92.350	Propithecus_coquereli
ENSRNOG00000014575	Rtca	100	87.335	ENSPVAG00000009478	RTCA	100	87.335	Pteropus_vampyrus
ENSRNOG00000014575	Rtca	100	68.579	ENSPNYG00000004722	rtca	99	68.579	Pundamilia_nyererei
ENSRNOG00000014575	Rtca	100	70.765	ENSPNAG00000022270	rtca	100	70.765	Pygocentrus_nattereri
ENSRNOG00000014575	Rtca	100	87.599	ENSRBIG00000041180	RTCA	100	89.968	Rhinopithecus_bieti
ENSRNOG00000014575	Rtca	100	90.710	ENSRROG00000024929	RTCA	100	90.710	Rhinopithecus_roxellana
ENSRNOG00000014575	Rtca	100	90.164	ENSSBOG00000028626	RTCA	100	90.164	Saimiri_boliviensis_boliviensis
ENSRNOG00000014575	Rtca	100	88.798	ENSSHAG00000001758	RTCA	100	88.798	Sarcophilus_harrisii
ENSRNOG00000014575	Rtca	98	67.778	ENSSMAG00000014680	rtca	97	67.778	Scophthalmus_maximus
ENSRNOG00000014575	Rtca	98	68.889	ENSSDUG00000015585	rtca	97	68.889	Seriola_dumerili
ENSRNOG00000014575	Rtca	96	69.231	ENSSLDG00000018985	rtca	95	69.231	Seriola_lalandi_dorsalis
ENSRNOG00000014575	Rtca	87	83.281	ENSSARG00000013993	RTCA	100	83.281	Sorex_araneus
ENSRNOG00000014575	Rtca	100	68.579	ENSSPAG00000011938	rtca	99	68.579	Stegastes_partitus
ENSRNOG00000014575	Rtca	100	93.443	ENSSSCG00000006865	RTCA	100	93.443	Sus_scrofa
ENSRNOG00000014575	Rtca	100	82.514	ENSTGUG00000005154	RTCA	100	82.514	Taeniopygia_guttata
ENSRNOG00000014575	Rtca	100	69.399	ENSTRUG00000008799	rtca	100	69.399	Takifugu_rubripes
ENSRNOG00000014575	Rtca	100	70.765	ENSTNIG00000004725	rtca	100	70.765	Tetraodon_nigroviridis
ENSRNOG00000014575	Rtca	59	80.000	ENSTBEG00000000943	RTCA	82	65.546	Tupaia_belangeri
ENSRNOG00000014575	Rtca	100	88.918	ENSTTRG00000015327	RTCA	100	88.918	Tursiops_truncatus
ENSRNOG00000014575	Rtca	93	90.029	ENSUAMG00000017265	RTCA	96	90.029	Ursus_americanus
ENSRNOG00000014575	Rtca	100	90.984	ENSUMAG00000007881	RTCA	100	90.984	Ursus_maritimus
ENSRNOG00000014575	Rtca	87	81.703	ENSVPAG00000001039	RTCA	84	81.703	Vicugna_pacos
ENSRNOG00000014575	Rtca	100	91.530	ENSVVUG00000022041	RTCA	68	91.530	Vulpes_vulpes
ENSRNOG00000014575	Rtca	99	66.120	ENSXETG00000031661	RTCA	99	66.120	Xenopus_tropicalis
ENSRNOG00000014575	Rtca	100	60.656	ENSXCOG00000008002	rtca	100	60.656	Xiphophorus_couchianus
ENSRNOG00000014575	Rtca	100	69.672	ENSXMAG00000005482	rtca	99	69.672	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003963	RNA-3'-phosphate cyclase activity	21873635.	IBA	Function
GO:0005524	ATP binding	-	IEA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005634	nucleus	-	ISO	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0006396	RNA processing	-	IEA	Process