EuRBPDB

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  • Description
  • RBDs
  • Expression
  • Transcripts
  • Gene Model
  • Pathways
  • PPI
  • Orthologs
  • Gene Ontology
Description
Ensembl ID
ENSRNOG00000014605 (Gene tree)
Gene ID
290907
Gene Symbol
Lig4
Alias
LOC290907
Full Name
DNA ligase 4
Gene Type
protein_coding
Species
Rattus_norvegicus
Status
putative
Strand
Plus strand
Length
5904 bases
Position
chr16:85331866-85337769
Accession
1304639
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSRNOP00000019615RNA_ligasePF09414.104.6e-1011
Expression
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSRNOT00000019615-3192XM_006253477ENSRNOP00000019615911 (aa)XP_006253539D4A0U6
Gene Model
Click here to download ENSRNOG00000014605's gene model file
Pathways
Pathway IDPathway NameSource
rno03450Non-homologous end-joiningKEGG
Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014605's network
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSRNOG00000014605Lig410086.169ENSG00000174405LIG410086.169Homo_sapiens
ENSRNOG00000014605Lig49964.505ENSAPOG00000000866lig49964.615Acanthochromis_polyacanthus
ENSRNOG00000014605Lig410082.876ENSAMEG00000019685LIG49982.876Ailuropoda_melanoleuca
ENSRNOG00000014605Lig49965.237ENSACIG00000018309lig49965.347Amphilophus_citrinellus
ENSRNOG00000014605Lig49964.505ENSAOCG00000011768lig49964.784Amphiprion_ocellaris
ENSRNOG00000014605Lig49964.725ENSAPEG00000017815lig49965.006Amphiprion_percula
ENSRNOG00000014605Lig49964.978ENSATEG00000005583lig49964.978Anabas_testudineus
ENSRNOG00000014605Lig49772.500ENSAPLG00000001673LIG49972.500Anas_platyrhynchos
ENSRNOG00000014605Lig49974.086ENSACAG00000014566LIG49974.086Anolis_carolinensis
ENSRNOG00000014605Lig410085.620ENSANAG00000012446LIG410085.620Aotus_nancymaae
ENSRNOG00000014605Lig49964.576ENSACLG00000027051lig49964.686Astatotilapia_calliptera
ENSRNOG00000014605Lig49964.114ENSAMXG00000008192lig49464.114Astyanax_mexicanus
ENSRNOG00000014605Lig410083.974ENSBTAG00000015868LIG410083.974Bos_taurus
ENSRNOG00000014605Lig410084.193ENSCJAG00000014689LIG410084.193Callithrix_jacchus
ENSRNOG00000014605Lig410084.632ENSCAFG00000006031LIG410084.632Canis_familiaris
ENSRNOG00000014605Lig410084.632ENSCAFG00020021230LIG410084.632Canis_lupus_dingo
ENSRNOG00000014605Lig410083.315ENSCHIG00000001019LIG410083.315Capra_hircus
ENSRNOG00000014605Lig49984.828ENSCAPG00000006284LIG49984.828Cavia_aperea
ENSRNOG00000014605Lig410084.523ENSCPOG00000014266LIG410084.523Cavia_porcellus
ENSRNOG00000014605Lig410084.632ENSCCAG00000019971LIG410084.632Cebus_capucinus
ENSRNOG00000014605Lig410085.620ENSCATG00000021075LIG410085.620Cercocebus_atys
ENSRNOG00000014605Lig410085.071ENSCLAG00000003376LIG410085.071Chinchilla_lanigera
ENSRNOG00000014605Lig410085.291ENSCSAG00000000211LIG410085.291Chlorocebus_sabaeus
ENSRNOG00000014605Lig49975.717ENSCPBG00000023291LIG49975.329Chrysemys_picta_bellii
ENSRNOG00000014605Lig46846.434ENSCING00000009536-9646.434Ciona_intestinalis
ENSRNOG00000014605Lig48345.861ENSCSAVG00000010336-9845.861Ciona_savignyi
ENSRNOG00000014605Lig410085.620ENSCANG00000005805LIG410085.620Colobus_angolensis_palliatus
ENSRNOG00000014605Lig410092.434ENSCGRG00001012072Lig410092.434Cricetulus_griseus_chok1gshd
ENSRNOG00000014605Lig410092.434ENSCGRG00000013417Lig410092.434Cricetulus_griseus_crigri
ENSRNOG00000014605Lig49765.000ENSCSEG00000013905lig49565.000Cynoglossus_semilaevis
ENSRNOG00000014605Lig49964.505ENSCVAG00000007896lig49964.505Cyprinodon_variegatus
ENSRNOG00000014605Lig49963.636ENSDARG00000060620lig49863.636Danio_rerio
ENSRNOG00000014605Lig410084.101ENSDNOG00000000513LIG410084.101Dasypus_novemcinctus
ENSRNOG00000014605Lig410084.742ENSDORG00000027303Lig410084.742Dipodomys_ordii
ENSRNOG00000014605Lig48930.886FBgn0030506Lig49130.886Drosophila_melanogaster
ENSRNOG00000014605Lig49979.933ENSETEG00000015563LIG410080.044Echinops_telfairi
ENSRNOG00000014605Lig49944.025ENSEBUG00000014243lig49944.025Eptatretus_burgeri
ENSRNOG00000014605Lig410085.401ENSEASG00005022073LIG410085.401Equus_asinus_asinus
ENSRNOG00000014605Lig410085.071ENSECAG00000003257LIG410085.071Equus_caballus
ENSRNOG00000014605Lig49965.308ENSELUG00000006787lig49965.380Esox_lucius
ENSRNOG00000014605Lig410084.303ENSFCAG00000031985LIG410084.303Felis_catus
ENSRNOG00000014605Lig48973.801ENSFALG00000004214LIG49873.801Ficedula_albicollis
ENSRNOG00000014605Lig410084.193ENSFDAG00000008973LIG410084.193Fukomys_damarensis
ENSRNOG00000014605Lig49963.846ENSFHEG00000007398lig49063.846Fundulus_heteroclitus
ENSRNOG00000014605Lig48564.212ENSGMOG00000012843lig49964.212Gadus_morhua
ENSRNOG00000014605Lig410072.052ENSGALG00000016854LIG410072.052Gallus_gallus
ENSRNOG00000014605Lig49964.365ENSGAFG00000019779lig49564.026Gambusia_affinis
ENSRNOG00000014605Lig49962.610ENSGACG00000014135lig49962.610Gasterosteus_aculeatus
ENSRNOG00000014605Lig410086.059ENSGGOG00000027771LIG410086.059Gorilla_gorilla
ENSRNOG00000014605Lig49964.356ENSHBUG00000006245lig49964.356Haplochromis_burtoni
ENSRNOG00000014605Lig410084.413ENSHGLG00000000718LIG410084.413Heterocephalus_glaber_female
ENSRNOG00000014605Lig410084.413ENSHGLG00100003265LIG410084.413Heterocephalus_glaber_male
ENSRNOG00000014605Lig49963.626ENSHCOG00000012010lig49963.626Hippocampus_comes
ENSRNOG00000014605Lig49965.165ENSIPUG00000013748lig49965.165Ictalurus_punctatus
ENSRNOG00000014605Lig410085.181ENSSTOG00000024303LIG410085.181Ictidomys_tridecemlineatus
ENSRNOG00000014605Lig410086.279ENSJJAG00000006750Lig410086.279Jaculus_jaculus
ENSRNOG00000014605Lig49963.898ENSKMAG00000001149lig49963.898Kryptolebias_marmoratus
ENSRNOG00000014605Lig49165.422ENSLBEG00000014578lig49965.542Labrus_bergylta
ENSRNOG00000014605Lig49970.154ENSLACG00000003282LIG49970.154Latimeria_chalumnae
ENSRNOG00000014605Lig49969.493ENSLOCG00000008901lig49869.493Lepisosteus_oculatus
ENSRNOG00000014605Lig410082.475ENSLAFG00000031152LIG410082.475Loxodonta_africana
ENSRNOG00000014605Lig410085.401ENSMFAG00000037235LIG410085.401Macaca_fascicularis
ENSRNOG00000014605Lig410085.401ENSMMUG00000008874LIG410085.401Macaca_mulatta
ENSRNOG00000014605Lig410085.401ENSMNEG00000023575LIG410085.401Macaca_nemestrina
ENSRNOG00000014605Lig410085.401ENSMLEG00000026720LIG410085.401Mandrillus_leucophaeus
ENSRNOG00000014605Lig49965.385ENSMAMG00000008472lig49965.495Mastacembelus_armatus
ENSRNOG00000014605Lig49964.576ENSMZEG00005001855lig49964.686Maylandia_zebra
ENSRNOG00000014605Lig410072.598ENSMGAG00000015532LIG410072.598Meleagris_gallopavo
ENSRNOG00000014605Lig410089.133ENSMOCG00000019000Lig410089.133Microtus_ochrogaster
ENSRNOG00000014605Lig49963.455ENSMMOG00000004390lig49963.566Mola_mola
ENSRNOG00000014605Lig410080.132ENSMODG00000025064LIG410080.592Monodelphis_domestica
ENSRNOG00000014605Lig49964.120ENSMALG00000008555lig49964.120Monopterus_albus
ENSRNOG00000014605Lig410094.182MGP_CAROLIEiJ_G0030809Lig410094.182Mus_caroli
ENSRNOG00000014605Lig410094.182ENSMUSG00000049717Lig410094.182Mus_musculus
ENSRNOG00000014605Lig410094.512MGP_PahariEiJ_G0021270Lig410094.512Mus_pahari
ENSRNOG00000014605Lig410093.963MGP_SPRETEiJ_G0031917Lig410093.963Mus_spretus
ENSRNOG00000014605Lig410083.644ENSMPUG00000018675LIG410083.644Mustela_putorius_furo
ENSRNOG00000014605Lig410084.303ENSMLUG00000001267LIG410084.303Myotis_lucifugus
ENSRNOG00000014605Lig410087.596ENSNGAG00000013258Lig410087.596Nannospalax_galili
ENSRNOG00000014605Lig49964.686ENSNBRG00000021252lig49964.796Neolamprologus_brichardi
ENSRNOG00000014605Lig410085.291ENSNLEG00000007888LIG410085.291Nomascus_leucogenys
ENSRNOG00000014605Lig410083.864ENSOPRG00000005765LIG410083.864Ochotona_princeps
ENSRNOG00000014605Lig410083.205ENSODEG00000019683LIG410083.205Octodon_degus
ENSRNOG00000014605Lig49964.576ENSONIG00000011969lig49864.686Oreochromis_niloticus
ENSRNOG00000014605Lig410085.510ENSOCUG00000015734LIG410085.510Oryctolagus_cuniculus
ENSRNOG00000014605Lig49963.158ENSORLG00000004041lig49963.268Oryzias_latipes
ENSRNOG00000014605Lig49963.596ENSORLG00020019607lig49963.706Oryzias_latipes_hni
ENSRNOG00000014605Lig49963.268ENSORLG00015017754lig49963.377Oryzias_latipes_hsok
ENSRNOG00000014605Lig47568.182ENSOMEG00000003459lig49968.182Oryzias_melastigma
ENSRNOG00000014605Lig410084.539ENSOGAG00000032120LIG49984.539Otolemur_garnettii
ENSRNOG00000014605Lig48284.966ENSOARG00000005590LIG49884.966Ovis_aries
ENSRNOG00000014605Lig410085.950ENSPPAG00000032998LIG410085.950Pan_paniscus
ENSRNOG00000014605Lig410084.523ENSPPRG00000017804LIG410084.523Panthera_pardus
ENSRNOG00000014605Lig410084.523ENSPTIG00000010051LIG410084.523Panthera_tigris_altaica
ENSRNOG00000014605Lig410086.059ENSPTRG00000006025LIG410086.059Pan_troglodytes
ENSRNOG00000014605Lig410085.730ENSPANG00000007562LIG410085.730Papio_anubis
ENSRNOG00000014605Lig49965.237ENSPKIG00000011645lig49865.237Paramormyrops_kingsleyae
ENSRNOG00000014605Lig49975.412ENSPSIG00000001504LIG49975.412Pelodiscus_sinensis
ENSRNOG00000014605Lig49961.444ENSPMGG00000013486lig49961.361Periophthalmus_magnuspinnatus
ENSRNOG00000014605Lig410091.009ENSPEMG00000000076Lig410091.009Peromyscus_maniculatus_bairdii
ENSRNOG00000014605Lig410080.592ENSPCIG00000021882LIG410080.592Phascolarctos_cinereus
ENSRNOG00000014605Lig49964.182ENSPFOG00000000797lig49963.846Poecilia_formosa
ENSRNOG00000014605Lig49964.071ENSPLAG00000001196lig49963.736Poecilia_latipinna
ENSRNOG00000014605Lig49964.182ENSPMEG00000021353lig49964.066Poecilia_mexicana
ENSRNOG00000014605Lig49963.737ENSPREG00000007323lig49963.626Poecilia_reticulata
ENSRNOG00000014605Lig410085.401ENSPPYG00000005540LIG410085.401Pongo_abelii
ENSRNOG00000014605Lig410084.303ENSPVAG00000016403LIG410084.303Pteropus_vampyrus
ENSRNOG00000014605Lig49964.466ENSPNYG00000009660lig49964.576Pundamilia_nyererei
ENSRNOG00000014605Lig410064.693ENSPNAG00000028069LIG410064.803Pygocentrus_nattereri
ENSRNOG00000014605Lig410064.693ENSPNAG00000028056lig410064.803Pygocentrus_nattereri
ENSRNOG00000014605Lig410084.413ENSRBIG00000039962LIG410084.413Rhinopithecus_bieti
ENSRNOG00000014605Lig410085.510ENSRROG00000006040LIG410085.510Rhinopithecus_roxellana
ENSRNOG00000014605Lig410084.852ENSSBOG00000019029LIG410084.852Saimiri_boliviensis_boliviensis
ENSRNOG00000014605Lig410077.851ENSSHAG00000009525LIG410077.851Sarcophilus_harrisii
ENSRNOG00000014605Lig49965.006ENSSFOG00015012835lig49965.006Scleropages_formosus
ENSRNOG00000014605Lig49962.458ENSSMAG00000011267lig49962.458Scophthalmus_maximus
ENSRNOG00000014605Lig49965.410ENSSDUG00000010343lig49865.410Seriola_dumerili
ENSRNOG00000014605Lig49963.677ENSSLDG00000003239lig49963.677Seriola_lalandi_dorsalis
ENSRNOG00000014605Lig410079.759ENSSARG00000006573LIG410079.759Sorex_araneus
ENSRNOG00000014605Lig49375.118ENSSPUG00000002444LIG410075.118Sphenodon_punctatus
ENSRNOG00000014605Lig49964.537ENSSPAG00000001609lig49964.648Stegastes_partitus
ENSRNOG00000014605Lig49983.828ENSSSCG00000009540LIG49983.828Sus_scrofa
ENSRNOG00000014605Lig49972.308ENSTGUG00000010795LIG410072.308Taeniopygia_guttata
ENSRNOG00000014605Lig49964.286ENSTRUG00000009984lig49964.286Takifugu_rubripes
ENSRNOG00000014605Lig49964.066ENSTNIG00000010348lig49964.286Tetraodon_nigroviridis
ENSRNOG00000014605Lig410085.401ENSTBEG00000017741LIG410085.401Tupaia_belangeri
ENSRNOG00000014605Lig410084.852ENSTTRG00000012660LIG410084.852Tursiops_truncatus
ENSRNOG00000014605Lig410083.095ENSUAMG00000003773LIG410083.095Ursus_americanus
ENSRNOG00000014605Lig49970.110ENSXETG00000002654lig49970.110Xenopus_tropicalis
ENSRNOG00000014605Lig49963.960ENSXCOG00000017401lig49963.626Xiphophorus_couchianus
ENSRNOG00000014605Lig49964.333ENSXMAG00000015142lig49963.996Xiphophorus_maculatus
Gene Ontology
Go IDGo_termPubmedIDEvidenceCategory
GO:0000012single strand break repair-IEAProcess
GO:0000012single strand break repair-ISOProcess
GO:0000793condensed chromosome-IEAComponent
GO:0000793condensed chromosome-ISOComponent
GO:0001701in utero embryonic development-IEAProcess
GO:0001701in utero embryonic development-ISOProcess
GO:0002328pro-B cell differentiation-IEAProcess
GO:0002328pro-B cell differentiation-ISOProcess
GO:0003677DNA binding9600082.IDAFunction
GO:0003677DNA binding-ISOFunction
GO:0003909DNA ligase activity-ISOFunction
GO:0003910DNA ligase (ATP) activity9600082.IDAFunction
GO:0003910DNA ligase (ATP) activity-ISOFunction
GO:0005524ATP binding9600082.IDAFunction
GO:0005524ATP binding-ISOFunction
GO:0005634nucleus9600082.IDAComponent
GO:0005634nucleus-ISOComponent
GO:0005654nucleoplasm-IEAComponent
GO:0005654nucleoplasm-ISOComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex21873635.IBAComponent
GO:0005958DNA-dependent protein kinase-DNA ligase 4 complex-ISOComponent
GO:0006260DNA replication-IEAProcess
GO:0006266DNA ligation9600082.IDAProcess
GO:0006266DNA ligation-ISOProcess
GO:0006281DNA repair-ISOProcess
GO:0006297nucleotide-excision repair, DNA gap filling21873635.IBAProcess
GO:0006297nucleotide-excision repair, DNA gap filling-ISOProcess
GO:0006302double-strand break repair-ISOProcess
GO:0006303double-strand break repair via nonhomologous end joining21873635.IBAProcess
GO:0006303double-strand break repair via nonhomologous end joining-ISOProcess
GO:0007417central nervous system development-IEAProcess
GO:0007417central nervous system development-ISOProcess
GO:0008022protein C-terminus binding-IEAFunction
GO:0008022protein C-terminus binding-ISOFunction
GO:0008283cell proliferation-IEAProcess
GO:0008283cell proliferation-ISOProcess
GO:0010165response to X-ray-IEAProcess
GO:0010165response to X-ray-ISOProcess
GO:0010212response to ionizing radiation-ISOProcess
GO:0010332response to gamma radiation-IEAProcess
GO:0010332response to gamma radiation-ISOProcess
GO:0016874ligase activity-ISOFunction
GO:0032807DNA ligase IV complex21873635.IBAComponent
GO:0032807DNA ligase IV complex-ISOComponent
GO:0033077T cell differentiation in thymus-IEAProcess
GO:0033077T cell differentiation in thymus-ISOProcess
GO:0033151V(D)J recombination-ISOProcess
GO:0033152immunoglobulin V(D)J recombination21873635.IBAProcess
GO:0033152immunoglobulin V(D)J recombination-ISOProcess
GO:0033153T cell receptor V(D)J recombination-IEAProcess
GO:0033153T cell receptor V(D)J recombination-ISOProcess
GO:0035019somatic stem cell population maintenance-IEAProcess
GO:0035019somatic stem cell population maintenance-ISOProcess
GO:0036464cytoplasmic ribonucleoprotein granule-IEAComponent
GO:0036464cytoplasmic ribonucleoprotein granule-ISOComponent
GO:0043524negative regulation of neuron apoptotic process-IEAProcess
GO:0043524negative regulation of neuron apoptotic process-ISOProcess
GO:0045190isotype switching-IEAProcess
GO:0045190isotype switching-ISOProcess
GO:0048146positive regulation of fibroblast proliferation-IEAProcess
GO:0048146positive regulation of fibroblast proliferation-ISOProcess
GO:0050769positive regulation of neurogenesis-IEAProcess
GO:0050769positive regulation of neurogenesis-ISOProcess
GO:0051102DNA ligation involved in DNA recombination-IEAProcess
GO:0051102DNA ligation involved in DNA recombination-ISOProcess
GO:0051103DNA ligation involved in DNA repair-IEAProcess
GO:0051103DNA ligation involved in DNA repair-ISOProcess
GO:0051276chromosome organization-IEAProcess
GO:0051276chromosome organization-ISOProcess
GO:0051402neuron apoptotic process-IEAProcess
GO:0051402neuron apoptotic process-ISOProcess
GO:0070419nonhomologous end joining complex-ISOComponent
GO:0071285cellular response to lithium ion19285016.IEPProcess
GO:0071479cellular response to ionizing radiation-IEAProcess
GO:0071479cellular response to ionizing radiation-ISOProcess
GO:0071897DNA biosynthetic process-IEAProcess
GO:0097680double-strand break repair via classical nonhomologous end joining-IEAProcess
GO:0097680double-strand break repair via classical nonhomologous end joining-ISOProcess
GO:2001252positive regulation of chromosome organization-IEAProcess
GO:2001252positive regulation of chromosome organization-ISOProcess

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