EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014712 (Gene tree)
Gene ID: 303173
Gene Symbol: Zfp39
Alias: LOC303173
Full Name: zinc finger protein 39
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 23391 bases
Position: chr10:45220282-45243672
Accession: 1306633
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	1	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	2	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	3	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	4	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	5	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	6	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	7	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	8	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	9	10
ENSRNOP00000019991	zf-C2H2	PF00096.26	1.7e-51	10	10
ENSRNOP00000019991	zf-met	PF12874.7	6.1e-07	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019991	-	4102	-	ENSRNOP00000019991	717 (aa)	-	D4A5T4

Gene Model

Click here to download ENSRNOG00000014712's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno05168	Herpes simplex virus 1 infection	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014712's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014712	Zfp39	59	33.832	ENSRNOG00000013460	Zfp319	90	34.903
ENSRNOG00000014712	Zfp39	92	52.713	ENSRNOG00000019416	Zfp61	96	52.548
ENSRNOG00000014712	Zfp39	88	48.341	ENSRNOG00000042777	Zfp28	96	42.654
ENSRNOG00000014712	Zfp39	92	46.651	ENSRNOG00000049259	LOC102549842	99	46.651
ENSRNOG00000014712	Zfp39	61	37.113	ENSRNOG00000008239	Repin1	83	36.105
ENSRNOG00000014712	Zfp39	71	54.545	ENSRNOG00000025937	Zfp26	84	54.545
ENSRNOG00000014712	Zfp39	64	49.235	ENSRNOG00000032625	AC118165.1	100	49.235
ENSRNOG00000014712	Zfp39	92	55.217	ENSRNOG00000019059	Zfp1	99	55.217
ENSRNOG00000014712	Zfp39	59	45.740	ENSRNOG00000061533	AABR07001926.3	90	46.890
ENSRNOG00000014712	Zfp39	59	45.045	ENSRNOG00000056716	Zbtb20	50	45.045
ENSRNOG00000014712	Zfp39	58	33.019	ENSRNOG00000016279	Zfp865	77	33.493
ENSRNOG00000014712	Zfp39	59	34.447	ENSRNOG00000023679	Prdm5	73	34.447
ENSRNOG00000014712	Zfp39	66	57.143	ENSRNOG00000030517	Zfp879	75	57.143
ENSRNOG00000014712	Zfp39	92	45.954	ENSRNOG00000022431	Zfp867	97	45.954
ENSRNOG00000014712	Zfp39	60	55.357	ENSRNOG00000003455	Zfp13	72	55.357
ENSRNOG00000014712	Zfp39	92	46.803	ENSRNOG00000043341	Zfp51	98	46.803
ENSRNOG00000014712	Zfp39	92	41.250	ENSRNOG00000016417	Zfp136	99	41.250
ENSRNOG00000014712	Zfp39	64	35.573	ENSRNOG00000028628	LOC100911196	78	35.385
ENSRNOG00000014712	Zfp39	92	44.023	ENSRNOG00000006684	Zfp317	90	44.023
ENSRNOG00000014712	Zfp39	60	52.252	ENSRNOG00000029490	Znf768	51	50.704
ENSRNOG00000014712	Zfp39	62	31.609	ENSRNOG00000055761	Zfp574	71	31.549
ENSRNOG00000014712	Zfp39	58	46.053	ENSRNOG00000047699	Snai2	51	46.053
ENSRNOG00000014712	Zfp39	67	48.980	ENSRNOG00000052406	LOC102552527	89	48.980
ENSRNOG00000014712	Zfp39	60	48.507	ENSRNOG00000048394	Zfp560	75	48.507
ENSRNOG00000014712	Zfp39	62	59.032	ENSRNOG00000014331	Zfp810	85	59.032
ENSRNOG00000014712	Zfp39	61	34.054	ENSRNOG00000016874	Zfp521	95	34.054
ENSRNOG00000014712	Zfp39	65	55.785	ENSRNOG00000015188	AABR07053681.1	81	55.785
ENSRNOG00000014712	Zfp39	61	40.000	ENSRNOG00000010436	Zbtb17	58	40.000
ENSRNOG00000014712	Zfp39	61	38.971	ENSRNOG00000013586	Snai3	54	38.971
ENSRNOG00000014712	Zfp39	70	35.145	ENSRNOG00000029980	Zbtb16	51	35.145
ENSRNOG00000014712	Zfp39	50	38.889	ENSRNOG00000007576	Zfp597	65	32.700
ENSRNOG00000014712	Zfp39	58	39.344	ENSRNOG00000002713	Zfp672	89	42.636
ENSRNOG00000014712	Zfp39	69	53.651	ENSRNOG00000030308	Zfp251	80	53.651
ENSRNOG00000014712	Zfp39	65	42.967	ENSRNOG00000024056	Zfp17	79	42.967

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014712	Zfp39	92	57.337	ENSCPOG00000036704	-	99	57.337	Cavia_porcellus
ENSRNOG00000014712	Zfp39	99	79.330	ENSCGRG00001002406	Zfp39	100	79.330	Cricetulus_griseus_chok1gshd
ENSRNOG00000014712	Zfp39	99	79.190	ENSCGRG00000002730	Zfp39	100	79.190	Cricetulus_griseus_crigri
ENSRNOG00000014712	Zfp39	99	66.480	ENSJJAG00000018925	Zfp39	99	66.480	Jaculus_jaculus
ENSRNOG00000014712	Zfp39	99	79.690	ENSMAUG00000001536	Zfp39	99	79.690	Mesocricetus_auratus
ENSRNOG00000014712	Zfp39	99	76.643	ENSMOCG00000017961	Zfp39	99	76.643	Microtus_ochrogaster
ENSRNOG00000014712	Zfp39	100	81.869	MGP_PahariEiJ_G0017548	Zfp39	100	81.869	Mus_pahari
ENSRNOG00000014712	Zfp39	100	66.992	ENSNGAG00000019853	Zfp39	99	66.992	Nannospalax_galili
ENSRNOG00000014712	Zfp39	60	76.667	ENSODEG00000000805	-	100	76.667	Octodon_degus
ENSRNOG00000014712	Zfp39	99	81.818	ENSPEMG00000009428	Zfp39	99	81.818	Peromyscus_maniculatus_bairdii

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003677	DNA binding	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0006355	regulation of transcription, DNA-templated	-	IEA	Process
GO:0046872	metal ion binding	-	IEA	Function