EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014720 (Gene tree)
Gene ID: 301665
Gene Symbol: Srbd1
Alias: LOC301665|RGD1562788
Full Name: S1 RNA binding domain 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 192298 bases
Position: chr6:9266891-9459188
Accession: 1562788
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019895	S1	PF00575.23	3e-09	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019894	-	3414	XM_006225676	ENSRNOP00000019895	983 (aa)	XP_006225738	D4A9B0

Gene Model

Click here to download ENSRNOG00000014720's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014720's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014720	Srbd1	99	81.325	ENSG00000068784	SRBD1	100	80.622	Homo_sapiens
ENSRNOG00000014720	Srbd1	83	56.715	ENSAPOG00000005103	si:ch211-117n7.8	83	56.835	Acanthochromis_polyacanthus
ENSRNOG00000014720	Srbd1	99	81.910	ENSAMEG00000005993	SRBD1	100	81.206	Ailuropoda_melanoleuca
ENSRNOG00000014720	Srbd1	83	56.490	ENSACIG00000009875	si:ch211-117n7.8	84	56.287	Amphilophus_citrinellus
ENSRNOG00000014720	Srbd1	85	56.690	ENSAOCG00000024718	si:ch211-117n7.8	85	56.353	Amphiprion_ocellaris
ENSRNOG00000014720	Srbd1	85	56.925	ENSAPEG00000002645	si:ch211-117n7.8	88	56.808	Amphiprion_percula
ENSRNOG00000014720	Srbd1	85	56.404	ENSATEG00000010844	si:ch211-117n7.8	85	56.404	Anabas_testudineus
ENSRNOG00000014720	Srbd1	99	68.651	ENSAPLG00000006313	SRBD1	100	68.651	Anas_platyrhynchos
ENSRNOG00000014720	Srbd1	99	81.325	ENSANAG00000025573	SRBD1	100	80.622	Aotus_nancymaae
ENSRNOG00000014720	Srbd1	83	56.532	ENSACLG00000024219	si:ch211-117n7.8	82	56.532	Astatotilapia_calliptera
ENSRNOG00000014720	Srbd1	85	60.306	ENSAMXG00000004294	SRBD1	85	60.424	Astyanax_mexicanus
ENSRNOG00000014720	Srbd1	99	80.101	ENSBTAG00000007508	SRBD1	97	79.397	Bos_taurus
ENSRNOG00000014720	Srbd1	99	80.723	ENSCJAG00000000727	SRBD1	100	80.120	Callithrix_jacchus
ENSRNOG00000014720	Srbd1	99	82.146	ENSCAFG00000002554	SRBD1	100	81.244	Canis_familiaris
ENSRNOG00000014720	Srbd1	100	78.979	ENSCAFG00020026284	SRBD1	99	85.463	Canis_lupus_dingo
ENSRNOG00000014720	Srbd1	99	79.899	ENSCHIG00000016535	SRBD1	98	79.196	Capra_hircus
ENSRNOG00000014720	Srbd1	99	82.265	ENSTSYG00000012797	SRBD1	100	81.563	Carlito_syrichta
ENSRNOG00000014720	Srbd1	99	82.234	ENSCPOG00000004773	SRBD1	100	81.929	Cavia_porcellus
ENSRNOG00000014720	Srbd1	99	81.727	ENSCCAG00000025589	SRBD1	100	81.024	Cebus_capucinus
ENSRNOG00000014720	Srbd1	99	81.827	ENSCATG00000039530	SRBD1	100	81.124	Cercocebus_atys
ENSRNOG00000014720	Srbd1	99	82.573	ENSCLAG00000008623	SRBD1	100	82.573	Chinchilla_lanigera
ENSRNOG00000014720	Srbd1	99	81.928	ENSCSAG00000013350	SRBD1	100	81.225	Chlorocebus_sabaeus
ENSRNOG00000014720	Srbd1	87	90.196	ENSCHOG00000003805	SRBD1	87	90.196	Choloepus_hoffmanni
ENSRNOG00000014720	Srbd1	95	71.593	ENSCPBG00000005677	SRBD1	97	71.979	Chrysemys_picta_bellii
ENSRNOG00000014720	Srbd1	79	43.112	ENSCING00000005950	-	99	43.130	Ciona_intestinalis
ENSRNOG00000014720	Srbd1	79	43.766	ENSCSAVG00000000861	-	99	43.766	Ciona_savignyi
ENSRNOG00000014720	Srbd1	99	81.288	ENSCANG00000016307	SRBD1	99	80.684	Colobus_angolensis_palliatus
ENSRNOG00000014720	Srbd1	99	88.098	ENSCGRG00001000513	Srbd1	100	88.098	Cricetulus_griseus_chok1gshd
ENSRNOG00000014720	Srbd1	99	88.098	ENSCGRG00000002283	Srbd1	100	88.098	Cricetulus_griseus_crigri
ENSRNOG00000014720	Srbd1	85	54.651	ENSCSEG00000000856	si:ch211-117n7.8	85	54.429	Cynoglossus_semilaevis
ENSRNOG00000014720	Srbd1	83	56.257	ENSCVAG00000020212	si:ch211-117n7.8	88	55.928	Cyprinodon_variegatus
ENSRNOG00000014720	Srbd1	99	80.881	ENSDNOG00000018686	SRBD1	100	80.180	Dasypus_novemcinctus
ENSRNOG00000014720	Srbd1	99	81.606	ENSDORG00000010468	Srbd1	100	80.468	Dipodomys_ordii
ENSRNOG00000014720	Srbd1	86	35.763	FBgn0051156	CG31156	88	35.991	Drosophila_melanogaster
ENSRNOG00000014720	Srbd1	89	79.603	ENSETEG00000000739	SRBD1	91	79.603	Echinops_telfairi
ENSRNOG00000014720	Srbd1	73	47.684	ENSEBUG00000008902	si:ch211-117n7.8	96	47.945	Eptatretus_burgeri
ENSRNOG00000014720	Srbd1	99	79.116	ENSEASG00005003132	SRBD1	97	85.987	Equus_asinus_asinus
ENSRNOG00000014720	Srbd1	99	82.229	ENSECAG00000013865	SRBD1	98	81.526	Equus_caballus
ENSRNOG00000014720	Srbd1	85	59.386	ENSELUG00000012592	si:ch211-117n7.8	82	59.386	Esox_lucius
ENSRNOG00000014720	Srbd1	99	82.229	ENSFCAG00000005101	SRBD1	100	81.526	Felis_catus
ENSRNOG00000014720	Srbd1	92	70.395	ENSFALG00000012966	SRBD1	97	67.887	Ficedula_albicollis
ENSRNOG00000014720	Srbd1	97	82.658	ENSFDAG00000016670	SRBD1	98	82.737	Fukomys_damarensis
ENSRNOG00000014720	Srbd1	83	57.058	ENSFHEG00000019480	si:ch211-117n7.8	82	57.211	Fundulus_heteroclitus
ENSRNOG00000014720	Srbd1	50	52.955	ENSGMOG00000018010	-	100	52.294	Gadus_morhua
ENSRNOG00000014720	Srbd1	89	73.761	ENSGALG00000009990	SRBD1	100	67.936	Gallus_gallus
ENSRNOG00000014720	Srbd1	83	56.377	ENSGAFG00000019664	si:ch211-117n7.8	84	55.948	Gambusia_affinis
ENSRNOG00000014720	Srbd1	62	59.425	ENSGACG00000010794	si:ch211-117n7.8	100	59.425	Gasterosteus_aculeatus
ENSRNOG00000014720	Srbd1	83	79.323	ENSGAGG00000006166	SRBD1	99	78.960	Gopherus_agassizii
ENSRNOG00000014720	Srbd1	98	81.911	ENSGGOG00000005910	SRBD1	99	81.931	Gorilla_gorilla
ENSRNOG00000014720	Srbd1	83	50.181	ENSHBUG00000013207	si:ch211-117n7.8	85	50.181	Haplochromis_burtoni
ENSRNOG00000014720	Srbd1	99	83.215	ENSHGLG00000018153	-	99	82.485	Heterocephalus_glaber_female
ENSRNOG00000014720	Srbd1	99	83.011	ENSHGLG00100015183	-	99	82.383	Heterocephalus_glaber_male
ENSRNOG00000014720	Srbd1	85	59.643	ENSIPUG00000009661	srbd1	85	59.167	Ictalurus_punctatus
ENSRNOG00000014720	Srbd1	99	84.264	ENSSTOG00000005898	SRBD1	100	83.723	Ictidomys_tridecemlineatus
ENSRNOG00000014720	Srbd1	99	78.622	ENSJJAG00000022244	Srbd1	100	77.992	Jaculus_jaculus
ENSRNOG00000014720	Srbd1	97	50.957	ENSKMAG00000003473	si:ch211-117n7.8	94	51.209	Kryptolebias_marmoratus
ENSRNOG00000014720	Srbd1	83	56.153	ENSLBEG00000027518	si:ch211-117n7.8	82	55.822	Labrus_bergylta
ENSRNOG00000014720	Srbd1	85	69.787	ENSLACG00000009790	SRBD1	99	69.431	Latimeria_chalumnae
ENSRNOG00000014720	Srbd1	95	58.668	ENSLOCG00000016360	si:ch211-117n7.8	96	57.523	Lepisosteus_oculatus
ENSRNOG00000014720	Srbd1	99	81.827	ENSMFAG00000042026	SRBD1	100	81.124	Macaca_fascicularis
ENSRNOG00000014720	Srbd1	99	81.727	ENSMMUG00000003490	SRBD1	100	81.024	Macaca_mulatta
ENSRNOG00000014720	Srbd1	99	79.217	ENSMNEG00000034701	SRBD1	100	78.514	Macaca_nemestrina
ENSRNOG00000014720	Srbd1	99	81.727	ENSMLEG00000000745	SRBD1	100	81.024	Mandrillus_leucophaeus
ENSRNOG00000014720	Srbd1	99	50.647	ENSMAMG00000021921	si:ch211-117n7.8	96	51.187	Mastacembelus_armatus
ENSRNOG00000014720	Srbd1	83	56.532	ENSMZEG00005027369	si:ch211-117n7.8	82	56.532	Maylandia_zebra
ENSRNOG00000014720	Srbd1	80	73.842	ENSMGAG00000010273	SRBD1	99	73.217	Meleagris_gallopavo
ENSRNOG00000014720	Srbd1	79	88.696	ENSMAUG00000013916	Srbd1	95	88.696	Mesocricetus_auratus
ENSRNOG00000014720	Srbd1	99	81.809	ENSMICG00000007835	SRBD1	100	81.106	Microcebus_murinus
ENSRNOG00000014720	Srbd1	99	87.500	ENSMOCG00000018716	Srbd1	100	87.500	Microtus_ochrogaster
ENSRNOG00000014720	Srbd1	96	51.031	ENSMMOG00000007507	si:ch211-117n7.8	99	50.980	Mola_mola
ENSRNOG00000014720	Srbd1	97	50.099	ENSMALG00000001562	si:ch211-117n7.8	83	56.019	Monopterus_albus
ENSRNOG00000014720	Srbd1	99	93.381	MGP_CAROLIEiJ_G0021934	Srbd1	99	94.737	Mus_caroli
ENSRNOG00000014720	Srbd1	99	93.381	ENSMUSG00000024135	Srbd1	100	93.381	Mus_musculus
ENSRNOG00000014720	Srbd1	99	92.566	MGP_PahariEiJ_G0020924	Srbd1	100	92.566	Mus_pahari
ENSRNOG00000014720	Srbd1	99	93.890	MGP_SPRETEiJ_G0022850	Srbd1	100	93.890	Mus_spretus
ENSRNOG00000014720	Srbd1	99	80.120	ENSMLUG00000007039	SRBD1	100	79.317	Myotis_lucifugus
ENSRNOG00000014720	Srbd1	99	82.231	ENSNGAG00000011893	Srbd1	100	81.540	Nannospalax_galili
ENSRNOG00000014720	Srbd1	83	55.636	ENSNBRG00000012873	si:ch211-117n7.8	84	55.636	Neolamprologus_brichardi
ENSRNOG00000014720	Srbd1	99	81.727	ENSNLEG00000016877	SRBD1	100	81.024	Nomascus_leucogenys
ENSRNOG00000014720	Srbd1	99	81.098	ENSODEG00000012095	SRBD1	100	80.793	Octodon_degus
ENSRNOG00000014720	Srbd1	83	57.263	ENSONIG00000000945	si:ch211-117n7.8	100	57.263	Oreochromis_niloticus
ENSRNOG00000014720	Srbd1	99	82.863	ENSOCUG00000015385	SRBD1	100	82.460	Oryctolagus_cuniculus
ENSRNOG00000014720	Srbd1	85	52.729	ENSORLG00000004427	si:ch211-117n7.8	83	52.729	Oryzias_latipes
ENSRNOG00000014720	Srbd1	85	55.413	ENSORLG00020012792	si:ch211-117n7.8	84	55.297	Oryzias_latipes_hni
ENSRNOG00000014720	Srbd1	85	55.401	ENSORLG00015018598	si:ch211-117n7.8	84	55.401	Oryzias_latipes_hsok
ENSRNOG00000014720	Srbd1	85	55.229	ENSOMEG00000012229	si:ch211-117n7.8	83	55.464	Oryzias_melastigma
ENSRNOG00000014720	Srbd1	99	77.008	ENSOGAG00000001076	SRBD1	100	75.904	Otolemur_garnettii
ENSRNOG00000014720	Srbd1	99	75.728	ENSOARG00000005958	SRBD1	100	75.146	Ovis_aries
ENSRNOG00000014720	Srbd1	99	81.928	ENSPPAG00000038442	SRBD1	100	81.225	Pan_paniscus
ENSRNOG00000014720	Srbd1	99	82.129	ENSPPRG00000003449	SRBD1	100	81.426	Panthera_pardus
ENSRNOG00000014720	Srbd1	99	82.329	ENSPTIG00000012495	SRBD1	100	81.627	Panthera_tigris_altaica
ENSRNOG00000014720	Srbd1	99	81.727	ENSPTRG00000011889	SRBD1	100	81.024	Pan_troglodytes
ENSRNOG00000014720	Srbd1	99	81.526	ENSPANG00000008063	SRBD1	100	80.823	Papio_anubis
ENSRNOG00000014720	Srbd1	85	59.026	ENSPKIG00000021973	si:ch211-117n7.8	87	58.690	Paramormyrops_kingsleyae
ENSRNOG00000014720	Srbd1	99	69.830	ENSPSIG00000008992	SRBD1	100	70.200	Pelodiscus_sinensis
ENSRNOG00000014720	Srbd1	87	52.961	ENSPMGG00000013348	si:ch211-117n7.8	98	50.153	Periophthalmus_magnuspinnatus
ENSRNOG00000014720	Srbd1	99	86.779	ENSPEMG00000020684	Srbd1	100	86.779	Peromyscus_maniculatus_bairdii
ENSRNOG00000014720	Srbd1	99	50.794	ENSPFOG00000010650	si:ch211-117n7.8	84	55.621	Poecilia_formosa
ENSRNOG00000014720	Srbd1	99	50.690	ENSPLAG00000002141	si:ch211-117n7.8	85	56.126	Poecilia_latipinna
ENSRNOG00000014720	Srbd1	99	50.794	ENSPMEG00000018537	si:ch211-117n7.8	84	55.621	Poecilia_mexicana
ENSRNOG00000014720	Srbd1	83	56.243	ENSPREG00000003258	si:ch211-117n7.8	85	56.287	Poecilia_reticulata
ENSRNOG00000014720	Srbd1	99	71.996	ENSPPYG00000012444	SRBD1	99	70.766	Pongo_abelii
ENSRNOG00000014720	Srbd1	82	79.679	ENSPCAG00000005629	SRBD1	85	78.800	Procavia_capensis
ENSRNOG00000014720	Srbd1	99	69.539	ENSPCOG00000017669	SRBD1	100	68.938	Propithecus_coquereli
ENSRNOG00000014720	Srbd1	99	71.988	ENSPVAG00000001782	SRBD1	100	71.386	Pteropus_vampyrus
ENSRNOG00000014720	Srbd1	83	54.197	ENSPNYG00000000508	si:ch211-117n7.8	85	54.197	Pundamilia_nyererei
ENSRNOG00000014720	Srbd1	85	61.310	ENSPNAG00000013492	SRBD1	85	61.429	Pygocentrus_nattereri
ENSRNOG00000014720	Srbd1	99	81.043	ENSRBIG00000033486	SRBD1	99	80.341	Rhinopithecus_bieti
ENSRNOG00000014720	Srbd1	99	81.043	ENSRROG00000041599	SRBD1	99	80.341	Rhinopithecus_roxellana
ENSRNOG00000014720	Srbd1	99	81.225	ENSSBOG00000024982	SRBD1	100	80.522	Saimiri_boliviensis_boliviensis
ENSRNOG00000014720	Srbd1	87	57.865	ENSSFOG00015001128	si:ch211-117n7.8	93	57.750	Scleropages_formosus
ENSRNOG00000014720	Srbd1	83	56.563	ENSSMAG00000018256	si:ch211-117n7.8	81	56.886	Scophthalmus_maximus
ENSRNOG00000014720	Srbd1	85	54.971	ENSSLDG00000023189	si:ch211-117n7.8	84	54.994	Seriola_lalandi_dorsalis
ENSRNOG00000014720	Srbd1	99	74.772	ENSSARG00000009740	SRBD1	100	74.367	Sorex_araneus
ENSRNOG00000014720	Srbd1	85	76.555	ENSSPUG00000010475	SRBD1	100	69.787	Sphenodon_punctatus
ENSRNOG00000014720	Srbd1	83	54.611	ENSSPAG00000008092	-	83	54.731	Stegastes_partitus
ENSRNOG00000014720	Srbd1	99	81.827	ENSSSCG00000008445	SRBD1	98	80.641	Sus_scrofa
ENSRNOG00000014720	Srbd1	83	75.483	ENSTGUG00000003878	SRBD1	99	75.121	Taeniopygia_guttata
ENSRNOG00000014720	Srbd1	97	50.842	ENSTRUG00000007080	si:ch211-117n7.8	92	55.781	Takifugu_rubripes
ENSRNOG00000014720	Srbd1	97	49.950	ENSTNIG00000007464	si:ch211-117n7.8	97	49.800	Tetraodon_nigroviridis
ENSRNOG00000014720	Srbd1	82	95.745	ENSTBEG00000004556	SRBD1	82	95.745	Tupaia_belangeri
ENSRNOG00000014720	Srbd1	93	80.641	ENSTTRG00000011871	SRBD1	94	80.641	Tursiops_truncatus
ENSRNOG00000014720	Srbd1	99	81.727	ENSUAMG00000008126	SRBD1	100	79.586	Ursus_americanus
ENSRNOG00000014720	Srbd1	99	81.827	ENSUMAG00000012902	SRBD1	98	81.124	Ursus_maritimus
ENSRNOG00000014720	Srbd1	90	84.368	ENSVPAG00000006825	SRBD1	99	83.592	Vicugna_pacos
ENSRNOG00000014720	Srbd1	99	81.727	ENSVVUG00000005389	SRBD1	100	80.723	Vulpes_vulpes
ENSRNOG00000014720	Srbd1	83	56.895	ENSXETG00000002760	srbd1	97	51.506	Xenopus_tropicalis
ENSRNOG00000014720	Srbd1	84	56.155	ENSXMAG00000016861	si:ch211-117n7.8	84	56.066	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003729	mRNA binding	21873635.	IBA	Function
GO:0003735	structural constituent of ribosome	21873635.	IBA	Function
GO:0006139	nucleobase-containing compound metabolic process	-	IEA	Process
GO:0006412	translation	21873635.	IBA	Process