EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014777 (Gene tree)
Gene ID: 298095
Gene Symbol: Prpf4
Alias: LOC298095
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 13925 bases
Position: chr5:78267248-78281172
Accession: 1311303
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000019910	PRP4	PF08799.11	4.8e-14	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000019910	-	2596	-	ENSRNOP00000019910	521 (aa)	-	D4A7J8

Gene Model

Click here to download ENSRNOG00000014777's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014777's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014777	Prpf4	56	33.673	ENSRNOG00000013429	Tbl3	66	33.673
ENSRNOG00000014777	Prpf4	56	30.370	ENSRNOG00000037295	Poc1a	71	30.370

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014777	Prpf4	100	98.848	ENSG00000136875	PRPF4	100	98.848	Homo_sapiens
ENSRNOG00000014777	Prpf4	96	77.615	ENSAPOG00000014132	prpf4	98	77.615	Acanthochromis_polyacanthus
ENSRNOG00000014777	Prpf4	100	99.040	ENSAMEG00000013048	PRPF4	98	99.040	Ailuropoda_melanoleuca
ENSRNOG00000014777	Prpf4	96	76.984	ENSACIG00000005579	prpf4	99	76.984	Amphilophus_citrinellus
ENSRNOG00000014777	Prpf4	96	77.030	ENSAOCG00000005457	prpf4	99	77.030	Amphiprion_ocellaris
ENSRNOG00000014777	Prpf4	96	76.832	ENSAPEG00000000776	prpf4	99	76.832	Amphiprion_percula
ENSRNOG00000014777	Prpf4	96	76.786	ENSATEG00000023013	prpf4	99	76.786	Anabas_testudineus
ENSRNOG00000014777	Prpf4	100	88.484	ENSAPLG00000006534	PRPF4	97	88.484	Anas_platyrhynchos
ENSRNOG00000014777	Prpf4	100	89.484	ENSACAG00000015110	PRPF4	100	89.484	Anolis_carolinensis
ENSRNOG00000014777	Prpf4	100	99.232	ENSANAG00000022464	PRPF4	96	99.232	Aotus_nancymaae
ENSRNOG00000014777	Prpf4	96	76.786	ENSACLG00000019031	prpf4	99	76.786	Astatotilapia_calliptera
ENSRNOG00000014777	Prpf4	97	62.188	ENSAMXG00000006756	prpf4	99	73.465	Astyanax_mexicanus
ENSRNOG00000014777	Prpf4	100	98.273	ENSBTAG00000004571	PRPF4	100	98.273	Bos_taurus
ENSRNOG00000014777	Prpf4	90	44.093	WBGene00007972	prp-4	96	44.000	Caenorhabditis_elegans
ENSRNOG00000014777	Prpf4	100	99.042	ENSCJAG00000017856	PRPF4	100	99.042	Callithrix_jacchus
ENSRNOG00000014777	Prpf4	100	99.040	ENSCAFG00000003224	PRPF4	97	99.040	Canis_familiaris
ENSRNOG00000014777	Prpf4	100	99.040	ENSCAFG00020022637	PRPF4	100	99.040	Canis_lupus_dingo
ENSRNOG00000014777	Prpf4	100	98.851	ENSCHIG00000024648	-	100	98.851	Capra_hircus
ENSRNOG00000014777	Prpf4	100	99.040	ENSTSYG00000010366	PRPF4	100	99.040	Carlito_syrichta
ENSRNOG00000014777	Prpf4	88	88.544	ENSCAPG00000008935	PRPF4	97	88.544	Cavia_aperea
ENSRNOG00000014777	Prpf4	100	98.848	ENSCPOG00000010747	-	100	98.848	Cavia_porcellus
ENSRNOG00000014777	Prpf4	100	92.322	ENSCPOG00000014729	-	100	92.322	Cavia_porcellus
ENSRNOG00000014777	Prpf4	100	99.040	ENSCCAG00000028990	PRPF4	100	99.040	Cebus_capucinus
ENSRNOG00000014777	Prpf4	100	98.848	ENSCATG00000021552	PRPF4	100	98.848	Cercocebus_atys
ENSRNOG00000014777	Prpf4	100	99.040	ENSCLAG00000013448	PRPF4	100	99.040	Chinchilla_lanigera
ENSRNOG00000014777	Prpf4	87	95.133	ENSCHOG00000007233	PRPF4	100	95.133	Choloepus_hoffmanni
ENSRNOG00000014777	Prpf4	99	90.680	ENSCPBG00000019136	PRPF4	74	90.680	Chrysemys_picta_bellii
ENSRNOG00000014777	Prpf4	96	59.055	ENSCING00000001299	-	97	58.416	Ciona_intestinalis
ENSRNOG00000014777	Prpf4	96	57.341	ENSCSAVG00000009178	-	100	58.658	Ciona_savignyi
ENSRNOG00000014777	Prpf4	100	99.040	ENSCANG00000003246	PRPF4	100	99.040	Colobus_angolensis_palliatus
ENSRNOG00000014777	Prpf4	100	99.616	ENSCGRG00001016992	Prpf4	100	99.616	Cricetulus_griseus_chok1gshd
ENSRNOG00000014777	Prpf4	100	99.616	ENSCGRG00000017560	Prpf4	100	99.616	Cricetulus_griseus_crigri
ENSRNOG00000014777	Prpf4	97	75.446	ENSCSEG00000020451	prpf4	99	75.446	Cynoglossus_semilaevis
ENSRNOG00000014777	Prpf4	97	79.604	ENSDARG00000067639	prpf4	99	79.604	Danio_rerio
ENSRNOG00000014777	Prpf4	100	98.467	ENSDNOG00000013203	PRPF4	100	98.467	Dasypus_novemcinctus
ENSRNOG00000014777	Prpf4	100	98.848	ENSDORG00000026275	Prpf4	100	98.848	Dipodomys_ordii
ENSRNOG00000014777	Prpf4	87	56.674	FBgn0036733	U4-U6-60K	99	50.547	Drosophila_melanogaster
ENSRNOG00000014777	Prpf4	100	96.941	ENSETEG00000020389	PRPF4	100	96.941	Echinops_telfairi
ENSRNOG00000014777	Prpf4	95	73.041	ENSEBUG00000015229	prpf4	86	73.502	Eptatretus_burgeri
ENSRNOG00000014777	Prpf4	100	99.232	ENSEASG00005022678	PRPF4	100	99.232	Equus_asinus_asinus
ENSRNOG00000014777	Prpf4	100	99.344	ENSECAG00000007072	PRPF4	100	99.232	Equus_caballus
ENSRNOG00000014777	Prpf4	100	78.384	ENSEEUG00000007480	PRPF4	100	78.384	Erinaceus_europaeus
ENSRNOG00000014777	Prpf4	97	80.792	ENSELUG00000007510	prpf4	99	80.792	Esox_lucius
ENSRNOG00000014777	Prpf4	100	99.042	ENSFCAG00000005514	PRPF4	100	99.042	Felis_catus
ENSRNOG00000014777	Prpf4	98	87.892	ENSFALG00000005423	PRPF4	90	85.161	Ficedula_albicollis
ENSRNOG00000014777	Prpf4	100	98.848	ENSFDAG00000005839	PRPF4	100	98.848	Fukomys_damarensis
ENSRNOG00000014777	Prpf4	96	76.190	ENSFHEG00000001300	prpf4	99	76.190	Fundulus_heteroclitus
ENSRNOG00000014777	Prpf4	98	89.628	ENSGALG00000008857	PRPF4	96	88.953	Gallus_gallus
ENSRNOG00000014777	Prpf4	65	71.176	ENSGAFG00000012164	prpf4	70	71.176	Gambusia_affinis
ENSRNOG00000014777	Prpf4	96	69.841	ENSGACG00000015476	prpf4	99	69.048	Gasterosteus_aculeatus
ENSRNOG00000014777	Prpf4	99	90.874	ENSGAGG00000025029	PRPF4	95	90.874	Gopherus_agassizii
ENSRNOG00000014777	Prpf4	100	98.848	ENSGGOG00000006943	PRPF4	100	98.848	Gorilla_gorilla
ENSRNOG00000014777	Prpf4	96	76.587	ENSHBUG00000000562	prpf4	99	76.587	Haplochromis_burtoni
ENSRNOG00000014777	Prpf4	100	80.230	ENSHGLG00000003838	-	100	80.230	Heterocephalus_glaber_female
ENSRNOG00000014777	Prpf4	100	81.644	ENSHGLG00000016628	-	100	82.409	Heterocephalus_glaber_female
ENSRNOG00000014777	Prpf4	100	98.848	ENSHGLG00000015191	PRPF4	100	98.848	Heterocephalus_glaber_female
ENSRNOG00000014777	Prpf4	100	80.230	ENSHGLG00100005571	-	100	80.230	Heterocephalus_glaber_male
ENSRNOG00000014777	Prpf4	97	78.812	ENSIPUG00000017956	PRPF4	99	78.812	Ictalurus_punctatus
ENSRNOG00000014777	Prpf4	100	98.656	ENSSTOG00000027833	PRPF4	100	98.656	Ictidomys_tridecemlineatus
ENSRNOG00000014777	Prpf4	100	99.232	ENSJJAG00000008838	Prpf4	100	99.232	Jaculus_jaculus
ENSRNOG00000014777	Prpf4	96	76.389	ENSKMAG00000013236	prpf4	99	76.389	Kryptolebias_marmoratus
ENSRNOG00000014777	Prpf4	96	75.697	ENSLBEG00000020611	prpf4	99	75.697	Labrus_bergylta
ENSRNOG00000014777	Prpf4	99	80.732	ENSLACG00000016317	PRPF4	99	80.732	Latimeria_chalumnae
ENSRNOG00000014777	Prpf4	97	81.782	ENSLOCG00000000581	prpf4	99	81.782	Lepisosteus_oculatus
ENSRNOG00000014777	Prpf4	100	98.467	ENSLAFG00000018225	PRPF4	100	98.467	Loxodonta_africana
ENSRNOG00000014777	Prpf4	100	98.656	ENSMFAG00000039397	PRPF4	100	98.656	Macaca_fascicularis
ENSRNOG00000014777	Prpf4	100	98.848	ENSMMUG00000005844	PRPF4	100	98.848	Macaca_mulatta
ENSRNOG00000014777	Prpf4	100	88.484	ENSMNEG00000033737	PRPF4	100	88.484	Macaca_nemestrina
ENSRNOG00000014777	Prpf4	100	98.848	ENSMLEG00000040284	PRPF4	100	98.848	Mandrillus_leucophaeus
ENSRNOG00000014777	Prpf4	97	75.937	ENSMAMG00000020141	prpf4	99	75.937	Mastacembelus_armatus
ENSRNOG00000014777	Prpf4	96	76.786	ENSMZEG00005023205	prpf4	99	76.786	Maylandia_zebra
ENSRNOG00000014777	Prpf4	99	87.885	ENSMGAG00000001796	PRPF4	97	87.885	Meleagris_gallopavo
ENSRNOG00000014777	Prpf4	100	99.040	ENSMAUG00000018022	Prpf4	100	99.040	Mesocricetus_auratus
ENSRNOG00000014777	Prpf4	100	98.081	ENSMICG00000015022	PRPF4	100	97.893	Microcebus_murinus
ENSRNOG00000014777	Prpf4	100	99.040	ENSMOCG00000018273	Prpf4	100	99.040	Microtus_ochrogaster
ENSRNOG00000014777	Prpf4	97	74.851	ENSMMOG00000021177	prpf4	99	74.851	Mola_mola
ENSRNOG00000014777	Prpf4	100	94.646	ENSMODG00000004444	-	100	94.646	Monodelphis_domestica
ENSRNOG00000014777	Prpf4	100	94.837	ENSMODG00000025096	-	97	94.837	Monodelphis_domestica
ENSRNOG00000014777	Prpf4	96	76.389	ENSMALG00000013624	prpf4	99	76.389	Monopterus_albus
ENSRNOG00000014777	Prpf4	100	99.808	MGP_CAROLIEiJ_G0026078	Prpf4	100	99.808	Mus_caroli
ENSRNOG00000014777	Prpf4	100	99.808	ENSMUSG00000066148	Prpf4	100	99.808	Mus_musculus
ENSRNOG00000014777	Prpf4	100	99.616	MGP_PahariEiJ_G0028413	Prpf4	100	99.616	Mus_pahari
ENSRNOG00000014777	Prpf4	100	99.808	MGP_SPRETEiJ_G0027042	Prpf4	100	99.808	Mus_spretus
ENSRNOG00000014777	Prpf4	100	99.040	ENSMPUG00000007883	PRPF4	100	99.040	Mustela_putorius_furo
ENSRNOG00000014777	Prpf4	100	98.656	ENSMLUG00000015309	-	97	98.656	Myotis_lucifugus
ENSRNOG00000014777	Prpf4	100	96.737	ENSMLUG00000008626	-	97	96.737	Myotis_lucifugus
ENSRNOG00000014777	Prpf4	100	93.474	ENSNGAG00000000468	Prpf4	100	93.474	Nannospalax_galili
ENSRNOG00000014777	Prpf4	96	76.984	ENSNBRG00000007972	prpf4	99	76.984	Neolamprologus_brichardi
ENSRNOG00000014777	Prpf4	100	99.232	ENSNLEG00000016647	PRPF4	100	99.232	Nomascus_leucogenys
ENSRNOG00000014777	Prpf4	99	94.942	ENSMEUG00000013256	PRPF4	100	94.942	Notamacropus_eugenii
ENSRNOG00000014777	Prpf4	100	98.276	ENSOPRG00000005302	PRPF4	100	98.276	Ochotona_princeps
ENSRNOG00000014777	Prpf4	100	99.232	ENSODEG00000018147	PRPF4	100	99.232	Octodon_degus
ENSRNOG00000014777	Prpf4	99	75.096	ENSONIG00000012671	prpf4	99	76.786	Oreochromis_niloticus
ENSRNOG00000014777	Prpf4	100	99.040	ENSOCUG00000005046	PRPF4	100	99.040	Oryctolagus_cuniculus
ENSRNOG00000014777	Prpf4	96	74.701	ENSORLG00000019641	prpf4	99	74.701	Oryzias_latipes
ENSRNOG00000014777	Prpf4	96	74.701	ENSORLG00020019438	prpf4	99	74.701	Oryzias_latipes_hni
ENSRNOG00000014777	Prpf4	96	74.526	ENSOMEG00000020941	prpf4	99	74.526	Oryzias_melastigma
ENSRNOG00000014777	Prpf4	100	93.858	ENSOGAG00000007802	PRPF4	98	93.858	Otolemur_garnettii
ENSRNOG00000014777	Prpf4	100	99.040	ENSOARG00000006319	PRPF4	97	99.040	Ovis_aries
ENSRNOG00000014777	Prpf4	100	98.848	ENSPPAG00000041797	PRPF4	100	98.848	Pan_paniscus
ENSRNOG00000014777	Prpf4	100	99.232	ENSPPRG00000014360	PRPF4	100	99.232	Panthera_pardus
ENSRNOG00000014777	Prpf4	100	99.232	ENSPTIG00000009574	PRPF4	100	99.232	Panthera_tigris_altaica
ENSRNOG00000014777	Prpf4	100	98.848	ENSPTRG00000021274	PRPF4	100	98.659	Pan_troglodytes
ENSRNOG00000014777	Prpf4	100	98.848	ENSPANG00000025776	PRPF4	96	98.848	Papio_anubis
ENSRNOG00000014777	Prpf4	97	81.188	ENSPKIG00000017259	prpf4	99	81.188	Paramormyrops_kingsleyae
ENSRNOG00000014777	Prpf4	100	89.251	ENSPSIG00000010713	PRPF4	90	90.802	Pelodiscus_sinensis
ENSRNOG00000014777	Prpf4	99	58.364	ENSPMGG00000000997	prpf4	99	58.470	Periophthalmus_magnuspinnatus
ENSRNOG00000014777	Prpf4	100	99.616	ENSPEMG00000024115	Prpf4	100	99.616	Peromyscus_maniculatus_bairdii
ENSRNOG00000014777	Prpf4	99	94.942	ENSPCIG00000003821	PRPF4	99	94.942	Phascolarctos_cinereus
ENSRNOG00000014777	Prpf4	96	70.020	ENSPFOG00000013524	prpf4	98	72.981	Poecilia_formosa
ENSRNOG00000014777	Prpf4	64	70.448	ENSPLAG00000011620	prpf4	96	72.050	Poecilia_latipinna
ENSRNOG00000014777	Prpf4	92	74.096	ENSPMEG00000006813	prpf4	98	74.096	Poecilia_mexicana
ENSRNOG00000014777	Prpf4	98	98.438	ENSPCAG00000002561	PRPF4	99	98.438	Procavia_capensis
ENSRNOG00000014777	Prpf4	100	98.656	ENSPCOG00000011975	PRPF4	100	98.656	Propithecus_coquereli
ENSRNOG00000014777	Prpf4	100	95.019	ENSPVAG00000004708	PRPF4	100	95.019	Pteropus_vampyrus
ENSRNOG00000014777	Prpf4	96	76.786	ENSPNYG00000008013	prpf4	99	76.786	Pundamilia_nyererei
ENSRNOG00000014777	Prpf4	97	80.396	ENSPNAG00000000697	prpf4	99	80.396	Pygocentrus_nattereri
ENSRNOG00000014777	Prpf4	100	99.040	ENSRBIG00000040221	PRPF4	100	99.040	Rhinopithecus_bieti
ENSRNOG00000014777	Prpf4	100	99.040	ENSRROG00000040240	PRPF4	100	99.040	Rhinopithecus_roxellana
ENSRNOG00000014777	Prpf4	100	95.220	ENSSHAG00000017658	PRPF4	100	95.220	Sarcophilus_harrisii
ENSRNOG00000014777	Prpf4	97	81.980	ENSSFOG00015008963	prpf4	99	81.980	Scleropages_formosus
ENSRNOG00000014777	Prpf4	96	75.397	ENSSMAG00000008889	prpf4	99	75.397	Scophthalmus_maximus
ENSRNOG00000014777	Prpf4	96	73.307	ENSSDUG00000022083	prpf4	98	73.506	Seriola_dumerili
ENSRNOG00000014777	Prpf4	96	73.506	ENSSLDG00000008115	prpf4	98	73.705	Seriola_lalandi_dorsalis
ENSRNOG00000014777	Prpf4	100	90.211	ENSSPUG00000015582	PRPF4	100	90.211	Sphenodon_punctatus
ENSRNOG00000014777	Prpf4	96	71.006	ENSSPAG00000011286	prpf4	99	71.006	Stegastes_partitus
ENSRNOG00000014777	Prpf4	100	99.232	ENSSSCG00000024648	PRPF4	100	99.232	Sus_scrofa
ENSRNOG00000014777	Prpf4	95	89.858	ENSTGUG00000002623	PRPF4	100	90.184	Taeniopygia_guttata
ENSRNOG00000014777	Prpf4	97	75.494	ENSTRUG00000008853	prpf4	99	75.494	Takifugu_rubripes
ENSRNOG00000014777	Prpf4	97	74.851	ENSTNIG00000013250	prpf4	99	74.851	Tetraodon_nigroviridis
ENSRNOG00000014777	Prpf4	100	90.230	ENSTBEG00000000821	PRPF4	100	90.230	Tupaia_belangeri
ENSRNOG00000014777	Prpf4	82	98.993	ENSTTRG00000003246	PRPF4	85	98.993	Tursiops_truncatus
ENSRNOG00000014777	Prpf4	64	96.108	ENSUAMG00000018288	PRPF4	90	96.108	Ursus_americanus
ENSRNOG00000014777	Prpf4	100	98.273	ENSUMAG00000019375	PRPF4	100	98.273	Ursus_maritimus
ENSRNOG00000014777	Prpf4	100	98.467	ENSVPAG00000005281	PRPF4	100	98.467	Vicugna_pacos
ENSRNOG00000014777	Prpf4	100	97.905	ENSVVUG00000002476	PRPF4	100	97.905	Vulpes_vulpes
ENSRNOG00000014777	Prpf4	69	58.333	ENSXCOG00000006101	prpf4	93	59.653	Xiphophorus_couchianus
ENSRNOG00000014777	Prpf4	88	64.629	ENSXMAG00000002750	prpf4	98	65.408	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0000398	mRNA splicing, via spliceosome	21873635.	IBA	Process
GO:0000398	mRNA splicing, via spliceosome	-	ISO	Process
GO:0003674	molecular_function	-	ND	Function
GO:0005575	cellular_component	-	ND	Component
GO:0005634	nucleus	-	ISO	Component
GO:0008150	biological_process	-	ND	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0015030	Cajal body	-	ISO	Component
GO:0016607	nuclear speck	-	IEA	Component
GO:0016607	nuclear speck	-	ISO	Component
GO:0017070	U6 snRNA binding	21873635.	IBA	Function
GO:0030621	U4 snRNA binding	21873635.	IBA	Function
GO:0046540	U4/U6 x U5 tri-snRNP complex	21873635.	IBA	Component
GO:0046540	U4/U6 x U5 tri-snRNP complex	-	ISO	Component
GO:0071001	U4/U6 snRNP	-	IEA	Component
GO:0071001	U4/U6 snRNP	-	ISO	Component
GO:0071005	U2-type precatalytic spliceosome	-	IEA	Component
GO:0071005	U2-type precatalytic spliceosome	-	ISO	Component
GO:0097525	spliceosomal snRNP complex	-	ISO	Component