EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

Pathways

PPI

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014833 (Gene tree)
Gene ID: 287768
Gene Symbol: Smndc1
Alias: LOC287768|MGC112663
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 11071 bases
Position: chr1:274096068-274107138
Accession: 1309151
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020539	SMN	PF06003.12	1.9e-15	1	1
ENSRNOP00000071875	SMN	PF06003.12	1.9e-15	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000076197	-	1221	-	ENSRNOP00000068456	147 (aa)	-	A0A096MKB9
ENSRNOT00000075874	-	674	-	ENSRNOP00000068340	42 (aa)	-	A0A096MK12
ENSRNOT00000076330	-	603	-	-	- (aa)	-	-
ENSRNOT00000020539	-	1338	XM_006231608	ENSRNOP00000020539	238 (aa)	XP_006231670	Q4QQU6
ENSRNOT00000078670	-	2005	-	ENSRNOP00000071875	238 (aa)	-	Q4QQU6
ENSRNOT00000076121	-	1479	-	ENSRNOP00000068081	121 (aa)	-	Q4QQU6
ENSRNOT00000076623	-	598	-	-	- (aa)	-	-

Gene Model

Click here to download ENSRNOG00000014833's gene model file

Pathways

Pathway ID	Pathway Name	Source
rno03040	Spliceosome	KEGG

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014833's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014833	Smndc1	100	99.160	ENSG00000119953	SMNDC1	100	99.160	Homo_sapiens
ENSRNOG00000014833	Smndc1	100	76.569	ENSAPOG00000021772	smndc1	100	75.210	Acanthochromis_polyacanthus
ENSRNOG00000014833	Smndc1	100	98.739	ENSAMEG00000005251	SMNDC1	100	98.739	Ailuropoda_melanoleuca
ENSRNOG00000014833	Smndc1	100	76.569	ENSACIG00000004819	smndc1	100	76.569	Amphilophus_citrinellus
ENSRNOG00000014833	Smndc1	100	76.569	ENSAOCG00000017869	smndc1	100	76.569	Amphiprion_ocellaris
ENSRNOG00000014833	Smndc1	100	76.569	ENSAPEG00000007752	smndc1	100	76.569	Amphiprion_percula
ENSRNOG00000014833	Smndc1	100	76.050	ENSATEG00000006830	smndc1	100	76.050	Anabas_testudineus
ENSRNOG00000014833	Smndc1	83	94.949	ENSAPLG00000004322	SMNDC1	100	94.949	Anas_platyrhynchos
ENSRNOG00000014833	Smndc1	100	94.958	ENSACAG00000005983	SMNDC1	100	94.958	Anolis_carolinensis
ENSRNOG00000014833	Smndc1	100	98.739	ENSANAG00000032875	SMNDC1	100	98.739	Aotus_nancymaae
ENSRNOG00000014833	Smndc1	100	75.630	ENSACLG00000016360	smndc1	100	75.630	Astatotilapia_calliptera
ENSRNOG00000014833	Smndc1	100	75.630	ENSAMXG00000020310	smndc1	100	75.630	Astyanax_mexicanus
ENSRNOG00000014833	Smndc1	100	98.319	ENSBTAG00000000551	SMNDC1	100	98.319	Bos_taurus
ENSRNOG00000014833	Smndc1	100	98.739	ENSCJAG00000018624	SMNDC1	100	98.739	Callithrix_jacchus
ENSRNOG00000014833	Smndc1	100	98.739	ENSCAFG00000010720	SMNDC1	100	98.739	Canis_familiaris
ENSRNOG00000014833	Smndc1	100	98.739	ENSCAFG00020011913	SMNDC1	100	98.739	Canis_lupus_dingo
ENSRNOG00000014833	Smndc1	100	98.319	ENSCHIG00000010604	SMNDC1	100	98.319	Capra_hircus
ENSRNOG00000014833	Smndc1	100	98.319	ENSTSYG00000026454	SMNDC1	100	98.319	Carlito_syrichta
ENSRNOG00000014833	Smndc1	100	83.750	ENSCAPG00000009132	SMNDC1	100	98.507	Cavia_aperea
ENSRNOG00000014833	Smndc1	100	98.739	ENSCPOG00000031666	SMNDC1	100	98.739	Cavia_porcellus
ENSRNOG00000014833	Smndc1	100	98.739	ENSCCAG00000021793	SMNDC1	100	98.739	Cebus_capucinus
ENSRNOG00000014833	Smndc1	100	98.319	ENSCATG00000035910	SMNDC1	100	98.319	Cercocebus_atys
ENSRNOG00000014833	Smndc1	100	98.319	ENSCLAG00000002838	SMNDC1	100	98.319	Chinchilla_lanigera
ENSRNOG00000014833	Smndc1	100	98.739	ENSCSAG00000005169	SMNDC1	100	98.739	Chlorocebus_sabaeus
ENSRNOG00000014833	Smndc1	81	97.927	ENSCHOG00000002936	SMNDC1	100	97.927	Choloepus_hoffmanni
ENSRNOG00000014833	Smndc1	100	96.639	ENSCPBG00000012837	SMNDC1	100	96.639	Chrysemys_picta_bellii
ENSRNOG00000014833	Smndc1	100	91.176	ENSCANG00000034620	-	100	91.176	Colobus_angolensis_palliatus
ENSRNOG00000014833	Smndc1	100	78.151	ENSCANG00000036994	-	100	78.151	Colobus_angolensis_palliatus
ENSRNOG00000014833	Smndc1	100	98.739	ENSCANG00000031720	-	100	98.739	Colobus_angolensis_palliatus
ENSRNOG00000014833	Smndc1	100	97.899	ENSCGRG00001012973	Smndc1	100	97.899	Cricetulus_griseus_chok1gshd
ENSRNOG00000014833	Smndc1	100	97.899	ENSCGRG00000012396	Smndc1	100	97.899	Cricetulus_griseus_crigri
ENSRNOG00000014833	Smndc1	100	76.050	ENSCSEG00000015621	smndc1	100	76.050	Cynoglossus_semilaevis
ENSRNOG00000014833	Smndc1	100	76.891	ENSCVAG00000020432	smndc1	100	76.891	Cyprinodon_variegatus
ENSRNOG00000014833	Smndc1	100	78.992	ENSDARG00000056235	smndc1	100	78.992	Danio_rerio
ENSRNOG00000014833	Smndc1	100	98.739	ENSDNOG00000016387	SMNDC1	83	98.739	Dasypus_novemcinctus
ENSRNOG00000014833	Smndc1	100	98.739	ENSDORG00000023715	Smndc1	100	98.739	Dipodomys_ordii
ENSRNOG00000014833	Smndc1	95	41.767	FBgn0039977	CG17454	98	42.972	Drosophila_melanogaster
ENSRNOG00000014833	Smndc1	100	71.369	ENSEBUG00000010929	smndc1	100	71.369	Eptatretus_burgeri
ENSRNOG00000014833	Smndc1	100	98.739	ENSEASG00005014930	SMNDC1	100	98.739	Equus_asinus_asinus
ENSRNOG00000014833	Smndc1	100	98.739	ENSECAG00000029973	SMNDC1	100	98.739	Equus_caballus
ENSRNOG00000014833	Smndc1	83	69.192	ENSEEUG00000013407	-	100	69.192	Erinaceus_europaeus
ENSRNOG00000014833	Smndc1	100	77.311	ENSELUG00000000227	smndc1	100	77.311	Esox_lucius
ENSRNOG00000014833	Smndc1	100	98.739	ENSFCAG00000027353	SMNDC1	100	98.739	Felis_catus
ENSRNOG00000014833	Smndc1	100	94.958	ENSFALG00000002306	SMNDC1	100	94.958	Ficedula_albicollis
ENSRNOG00000014833	Smndc1	100	99.160	ENSFDAG00000006468	SMNDC1	100	99.160	Fukomys_damarensis
ENSRNOG00000014833	Smndc1	100	76.471	ENSFHEG00000020150	smndc1	100	76.471	Fundulus_heteroclitus
ENSRNOG00000014833	Smndc1	100	76.891	ENSGMOG00000016585	smndc1	100	76.891	Gadus_morhua
ENSRNOG00000014833	Smndc1	100	94.958	ENSGALG00000008561	SMNDC1	100	94.958	Gallus_gallus
ENSRNOG00000014833	Smndc1	100	75.210	ENSGAFG00000011582	smndc1	100	75.210	Gambusia_affinis
ENSRNOG00000014833	Smndc1	100	75.630	ENSGACG00000009468	smndc1	100	75.630	Gasterosteus_aculeatus
ENSRNOG00000014833	Smndc1	100	96.639	ENSGAGG00000024547	SMNDC1	100	96.639	Gopherus_agassizii
ENSRNOG00000014833	Smndc1	100	98.739	ENSGGOG00000010071	SMNDC1	100	98.739	Gorilla_gorilla
ENSRNOG00000014833	Smndc1	100	75.630	ENSHBUG00000017596	smndc1	100	75.630	Haplochromis_burtoni
ENSRNOG00000014833	Smndc1	100	68.443	ENSHGLG00000001157	-	100	65.306	Heterocephalus_glaber_female
ENSRNOG00000014833	Smndc1	100	99.160	ENSHGLG00000013390	-	100	99.160	Heterocephalus_glaber_female
ENSRNOG00000014833	Smndc1	100	99.160	ENSHGLG00100004814	-	100	99.160	Heterocephalus_glaber_male
ENSRNOG00000014833	Smndc1	100	76.639	ENSHGLG00100004278	-	100	76.230	Heterocephalus_glaber_male
ENSRNOG00000014833	Smndc1	100	74.895	ENSHCOG00000000783	smndc1	100	74.895	Hippocampus_comes
ENSRNOG00000014833	Smndc1	100	76.891	ENSIPUG00000004217	smndc1	100	76.891	Ictalurus_punctatus
ENSRNOG00000014833	Smndc1	100	98.319	ENSSTOG00000006088	SMNDC1	100	98.319	Ictidomys_tridecemlineatus
ENSRNOG00000014833	Smndc1	100	98.739	ENSJJAG00000019974	Smndc1	100	98.739	Jaculus_jaculus
ENSRNOG00000014833	Smndc1	100	75.210	ENSKMAG00000020134	smndc1	100	75.210	Kryptolebias_marmoratus
ENSRNOG00000014833	Smndc1	100	74.370	ENSLBEG00000004598	smndc1	100	74.370	Labrus_bergylta
ENSRNOG00000014833	Smndc1	100	83.613	ENSLACG00000007784	SMNDC1	100	83.613	Latimeria_chalumnae
ENSRNOG00000014833	Smndc1	100	84.454	ENSLOCG00000012355	smndc1	100	84.454	Lepisosteus_oculatus
ENSRNOG00000014833	Smndc1	100	98.319	ENSLAFG00000014353	SMNDC1	100	98.319	Loxodonta_africana
ENSRNOG00000014833	Smndc1	100	81.092	ENSMFAG00000038381	-	100	81.092	Macaca_fascicularis
ENSRNOG00000014833	Smndc1	100	98.739	ENSMFAG00000002433	-	100	98.739	Macaca_fascicularis
ENSRNOG00000014833	Smndc1	100	98.739	ENSMMUG00000007775	SMNDC1	100	98.739	Macaca_mulatta
ENSRNOG00000014833	Smndc1	100	81.092	ENSMMUG00000045875	-	100	81.092	Macaca_mulatta
ENSRNOG00000014833	Smndc1	100	87.395	ENSMNEG00000033853	-	100	87.395	Macaca_nemestrina
ENSRNOG00000014833	Smndc1	100	98.739	ENSMNEG00000042963	-	100	98.739	Macaca_nemestrina
ENSRNOG00000014833	Smndc1	100	92.469	ENSMLEG00000040236	SMNDC1	100	92.050	Mandrillus_leucophaeus
ENSRNOG00000014833	Smndc1	89	73.239	ENSMAMG00000018233	smndc1	87	73.239	Mastacembelus_armatus
ENSRNOG00000014833	Smndc1	100	75.630	ENSMZEG00005027510	smndc1	100	75.630	Maylandia_zebra
ENSRNOG00000014833	Smndc1	84	94.500	ENSMGAG00000010777	SMNDC1	84	94.500	Meleagris_gallopavo
ENSRNOG00000014833	Smndc1	100	98.739	ENSMAUG00000012243	-	100	98.739	Mesocricetus_auratus
ENSRNOG00000014833	Smndc1	99	79.747	ENSMAUG00000005459	-	93	79.747	Mesocricetus_auratus
ENSRNOG00000014833	Smndc1	100	98.739	ENSMICG00000027336	-	100	98.739	Microcebus_murinus
ENSRNOG00000014833	Smndc1	100	85.714	ENSMICG00000031640	-	100	85.714	Microcebus_murinus
ENSRNOG00000014833	Smndc1	100	98.319	ENSMOCG00000002458	Smndc1	100	98.319	Microtus_ochrogaster
ENSRNOG00000014833	Smndc1	100	76.471	ENSMMOG00000008856	smndc1	100	76.471	Mola_mola
ENSRNOG00000014833	Smndc1	100	98.739	ENSMODG00000010542	SMNDC1	100	98.739	Monodelphis_domestica
ENSRNOG00000014833	Smndc1	100	76.050	ENSMALG00000017598	smndc1	100	76.050	Monopterus_albus
ENSRNOG00000014833	Smndc1	100	100.000	MGP_CAROLIEiJ_G0023072	Smndc1	100	100.000	Mus_caroli
ENSRNOG00000014833	Smndc1	100	99.580	ENSMUSG00000025024	Smndc1	100	99.580	Mus_musculus
ENSRNOG00000014833	Smndc1	100	99.160	MGP_PahariEiJ_G0014560	Smndc1	100	99.160	Mus_pahari
ENSRNOG00000014833	Smndc1	100	99.580	MGP_SPRETEiJ_G0023993	Smndc1	100	99.580	Mus_spretus
ENSRNOG00000014833	Smndc1	100	98.739	ENSMPUG00000002089	SMNDC1	100	98.739	Mustela_putorius_furo
ENSRNOG00000014833	Smndc1	100	97.479	ENSMLUG00000016007	SMNDC1	100	97.479	Myotis_lucifugus
ENSRNOG00000014833	Smndc1	100	97.899	ENSNGAG00000006833	Smndc1	100	97.899	Nannospalax_galili
ENSRNOG00000014833	Smndc1	100	75.210	ENSNBRG00000017089	smndc1	100	75.210	Neolamprologus_brichardi
ENSRNOG00000014833	Smndc1	100	98.739	ENSNLEG00000015471	SMNDC1	100	98.739	Nomascus_leucogenys
ENSRNOG00000014833	Smndc1	82	58.000	ENSMEUG00000010120	-	99	58.500	Notamacropus_eugenii
ENSRNOG00000014833	Smndc1	100	98.739	ENSOPRG00000015348	SMNDC1	100	98.739	Ochotona_princeps
ENSRNOG00000014833	Smndc1	100	68.908	ENSODEG00000007594	-	100	65.966	Octodon_degus
ENSRNOG00000014833	Smndc1	100	75.210	ENSONIG00000000434	smndc1	100	75.210	Oreochromis_niloticus
ENSRNOG00000014833	Smndc1	100	98.319	ENSOANG00000001598	SMNDC1	100	98.319	Ornithorhynchus_anatinus
ENSRNOG00000014833	Smndc1	100	74.790	ENSOCUG00000012274	-	100	76.471	Oryctolagus_cuniculus
ENSRNOG00000014833	Smndc1	100	98.739	ENSOCUG00000008145	-	100	98.739	Oryctolagus_cuniculus
ENSRNOG00000014833	Smndc1	100	75.630	ENSORLG00000005934	smndc1	95	75.630	Oryzias_latipes
ENSRNOG00000014833	Smndc1	100	75.630	ENSORLG00020008796	smndc1	95	75.630	Oryzias_latipes_hni
ENSRNOG00000014833	Smndc1	100	75.630	ENSORLG00015013666	smndc1	100	75.630	Oryzias_latipes_hsok
ENSRNOG00000014833	Smndc1	100	77.311	ENSOMEG00000007590	smndc1	100	77.311	Oryzias_melastigma
ENSRNOG00000014833	Smndc1	100	98.319	ENSOGAG00000000571	SMNDC1	100	98.319	Otolemur_garnettii
ENSRNOG00000014833	Smndc1	100	98.319	ENSOARG00000009500	SMNDC1	100	98.319	Ovis_aries
ENSRNOG00000014833	Smndc1	100	98.739	ENSPPAG00000027815	SMNDC1	100	98.739	Pan_paniscus
ENSRNOG00000014833	Smndc1	100	98.739	ENSPPRG00000013749	SMNDC1	100	98.739	Panthera_pardus
ENSRNOG00000014833	Smndc1	100	98.739	ENSPTIG00000011451	SMNDC1	100	98.739	Panthera_tigris_altaica
ENSRNOG00000014833	Smndc1	100	98.739	ENSPTRG00000002937	SMNDC1	100	98.739	Pan_troglodytes
ENSRNOG00000014833	Smndc1	100	92.857	ENSPANG00000031346	-	100	92.857	Papio_anubis
ENSRNOG00000014833	Smndc1	100	98.739	ENSPANG00000020805	-	100	98.739	Papio_anubis
ENSRNOG00000014833	Smndc1	100	81.092	ENSPKIG00000017164	smndc1	100	81.092	Paramormyrops_kingsleyae
ENSRNOG00000014833	Smndc1	100	97.059	ENSPSIG00000012257	SMNDC1	100	97.059	Pelodiscus_sinensis
ENSRNOG00000014833	Smndc1	100	73.529	ENSPMGG00000015651	smndc1	100	73.529	Periophthalmus_magnuspinnatus
ENSRNOG00000014833	Smndc1	100	98.739	ENSPEMG00000022058	Smndc1	100	98.739	Peromyscus_maniculatus_bairdii
ENSRNOG00000014833	Smndc1	100	67.623	ENSPMAG00000007705	smndc1	100	67.623	Petromyzon_marinus
ENSRNOG00000014833	Smndc1	97	62.174	ENSPCIG00000009693	-	100	62.174	Phascolarctos_cinereus
ENSRNOG00000014833	Smndc1	100	98.739	ENSPCIG00000018419	SMNDC1	100	98.739	Phascolarctos_cinereus
ENSRNOG00000014833	Smndc1	100	75.630	ENSPFOG00000017113	smndc1	100	75.630	Poecilia_formosa
ENSRNOG00000014833	Smndc1	100	76.050	ENSPLAG00000010372	smndc1	100	76.050	Poecilia_latipinna
ENSRNOG00000014833	Smndc1	100	76.050	ENSPMEG00000012288	smndc1	100	76.050	Poecilia_mexicana
ENSRNOG00000014833	Smndc1	100	75.210	ENSPREG00000012279	smndc1	100	75.210	Poecilia_reticulata
ENSRNOG00000014833	Smndc1	100	98.739	ENSPPYG00000002643	SMNDC1	100	98.739	Pongo_abelii
ENSRNOG00000014833	Smndc1	81	97.927	ENSPCAG00000016183	SMNDC1	100	97.927	Procavia_capensis
ENSRNOG00000014833	Smndc1	100	98.319	ENSPCOG00000024343	SMNDC1	100	98.319	Propithecus_coquereli
ENSRNOG00000014833	Smndc1	100	76.891	ENSPVAG00000004368	SMNDC1	100	76.891	Pteropus_vampyrus
ENSRNOG00000014833	Smndc1	92	69.333	ENSPNYG00000024093	smndc1	86	75.253	Pundamilia_nyererei
ENSRNOG00000014833	Smndc1	100	76.050	ENSPNAG00000025285	smndc1	100	76.050	Pygocentrus_nattereri
ENSRNOG00000014833	Smndc1	100	98.319	ENSRBIG00000000224	-	100	98.319	Rhinopithecus_bieti
ENSRNOG00000014833	Smndc1	100	82.353	ENSRBIG00000032452	-	100	82.353	Rhinopithecus_bieti
ENSRNOG00000014833	Smndc1	100	98.739	ENSRROG00000044992	-	100	98.739	Rhinopithecus_roxellana
ENSRNOG00000014833	Smndc1	100	82.773	ENSRROG00000039125	-	100	82.773	Rhinopithecus_roxellana
ENSRNOG00000014833	Smndc1	100	98.739	ENSSBOG00000026789	SMNDC1	100	98.739	Saimiri_boliviensis_boliviensis
ENSRNOG00000014833	Smndc1	100	98.739	ENSSHAG00000015189	SMNDC1	100	98.739	Sarcophilus_harrisii
ENSRNOG00000014833	Smndc1	100	80.252	ENSSFOG00015008311	smndc1	100	80.252	Scleropages_formosus
ENSRNOG00000014833	Smndc1	100	75.630	ENSSMAG00000020118	smndc1	100	75.630	Scophthalmus_maximus
ENSRNOG00000014833	Smndc1	100	76.471	ENSSDUG00000015330	smndc1	100	76.471	Seriola_dumerili
ENSRNOG00000014833	Smndc1	100	76.471	ENSSLDG00000017325	smndc1	100	76.471	Seriola_lalandi_dorsalis
ENSRNOG00000014833	Smndc1	100	98.319	ENSSARG00000006063	SMNDC1	100	98.319	Sorex_araneus
ENSRNOG00000014833	Smndc1	100	95.378	ENSSPUG00000004574	SMNDC1	100	95.378	Sphenodon_punctatus
ENSRNOG00000014833	Smndc1	100	75.732	ENSSPAG00000000338	smndc1	100	75.732	Stegastes_partitus
ENSRNOG00000014833	Smndc1	100	98.319	ENSSSCG00000030507	SMNDC1	100	98.319	Sus_scrofa
ENSRNOG00000014833	Smndc1	100	94.958	ENSTGUG00000010599	SMNDC1	100	94.958	Taeniopygia_guttata
ENSRNOG00000014833	Smndc1	100	73.950	ENSTRUG00000023281	smndc1	100	73.950	Takifugu_rubripes
ENSRNOG00000014833	Smndc1	100	75.210	ENSTNIG00000013331	smndc1	100	75.210	Tetraodon_nigroviridis
ENSRNOG00000014833	Smndc1	100	99.160	ENSTBEG00000014337	SMNDC1	100	99.160	Tupaia_belangeri
ENSRNOG00000014833	Smndc1	100	98.739	ENSUAMG00000008142	SMNDC1	100	98.739	Ursus_americanus
ENSRNOG00000014833	Smndc1	100	98.739	ENSUMAG00000023722	SMNDC1	100	98.739	Ursus_maritimus
ENSRNOG00000014833	Smndc1	83	97.980	ENSVPAG00000003402	SMNDC1	100	97.980	Vicugna_pacos
ENSRNOG00000014833	Smndc1	100	98.739	ENSVVUG00000007820	SMNDC1	100	98.739	Vulpes_vulpes
ENSRNOG00000014833	Smndc1	73	75.000	ENSXETG00000015415	SMNDC1	100	81.690	Xenopus_tropicalis
ENSRNOG00000014833	Smndc1	100	75.210	ENSXCOG00000009159	smndc1	100	75.210	Xiphophorus_couchianus
ENSRNOG00000014833	Smndc1	100	74.790	ENSXMAG00000012755	smndc1	100	74.790	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0003723	RNA binding	-	IEA	Function
GO:0005681	spliceosomal complex	-	IEA	Component
GO:0005737	cytoplasm	-	IEA	Component
GO:0006397	mRNA processing	-	IEA	Process
GO:0006915	apoptotic process	-	IEA	Process
GO:0008380	RNA splicing	-	IEA	Process
GO:0015030	Cajal body	-	IEA	Component
GO:0016607	nuclear speck	-	IEA	Component