EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000014999 (Gene tree)
Gene ID: 309126
Gene Symbol: Tnpo1
Alias: LOC309126
Full Name: transportin 1
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Minus strand
Length: 64886 bases
Position: chr2:29056219-29121104
Accession: 1308372
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020543	IBN_N	PF03810.19	5.8e-16	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020543	-	8281	XM_006231839	ENSRNOP00000020543	890 (aa)	XP_006231901	F1LQP9

Gene Model

Click here to download ENSRNOG00000014999's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000014999's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000014999	Tnpo1	99	85.682	ENSRNOG00000003970	Tnpo2	97	85.682

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000014999	Tnpo1	100	99.438	ENSG00000083312	TNPO1	100	100.000	Homo_sapiens
ENSRNOG00000014999	Tnpo1	100	93.708	ENSAPOG00000003453	tnpo1	100	93.708	Acanthochromis_polyacanthus
ENSRNOG00000014999	Tnpo1	100	98.552	ENSAMEG00000007147	TNPO1	99	98.552	Ailuropoda_melanoleuca
ENSRNOG00000014999	Tnpo1	87	93.023	ENSACIG00000003711	tnpo1	99	93.023	Amphilophus_citrinellus
ENSRNOG00000014999	Tnpo1	100	93.820	ENSAOCG00000008154	tnpo1	100	93.820	Amphiprion_ocellaris
ENSRNOG00000014999	Tnpo1	100	93.820	ENSAPEG00000001112	tnpo1	100	93.820	Amphiprion_percula
ENSRNOG00000014999	Tnpo1	100	93.596	ENSATEG00000010408	tnpo1	100	93.596	Anabas_testudineus
ENSRNOG00000014999	Tnpo1	99	92.559	ENSAPLG00000009619	-	97	93.678	Anas_platyrhynchos
ENSRNOG00000014999	Tnpo1	100	96.854	ENSACAG00000009599	TNPO1	100	96.854	Anolis_carolinensis
ENSRNOG00000014999	Tnpo1	100	98.989	ENSANAG00000022453	-	99	98.989	Aotus_nancymaae
ENSRNOG00000014999	Tnpo1	100	88.315	ENSANAG00000025351	-	99	88.315	Aotus_nancymaae
ENSRNOG00000014999	Tnpo1	100	63.858	ENSANAG00000027118	-	99	63.747	Aotus_nancymaae
ENSRNOG00000014999	Tnpo1	100	91.685	ENSACLG00000027223	tnpo1	100	91.685	Astatotilapia_calliptera
ENSRNOG00000014999	Tnpo1	100	92.601	ENSAMXG00000009842	tnpo1	100	92.489	Astyanax_mexicanus
ENSRNOG00000014999	Tnpo1	100	99.213	ENSBTAG00000007979	TNPO1	99	99.213	Bos_taurus
ENSRNOG00000014999	Tnpo1	100	99.101	ENSCJAG00000016409	TNPO1	99	99.101	Callithrix_jacchus
ENSRNOG00000014999	Tnpo1	96	99.183	ENSCAFG00000008081	TNPO1	100	99.183	Canis_familiaris
ENSRNOG00000014999	Tnpo1	100	96.292	ENSCAFG00020017397	TNPO1	100	96.292	Canis_lupus_dingo
ENSRNOG00000014999	Tnpo1	100	99.101	ENSCHIG00000023462	TNPO1	99	99.101	Capra_hircus
ENSRNOG00000014999	Tnpo1	99	95.141	ENSTSYG00000001871	TNPO1	97	97.661	Carlito_syrichta
ENSRNOG00000014999	Tnpo1	100	98.989	ENSCCAG00000026472	TNPO1	100	98.989	Cebus_capucinus
ENSRNOG00000014999	Tnpo1	100	99.438	ENSCATG00000043792	TNPO1	100	99.438	Cercocebus_atys
ENSRNOG00000014999	Tnpo1	100	98.989	ENSCLAG00000016191	TNPO1	100	98.989	Chinchilla_lanigera
ENSRNOG00000014999	Tnpo1	100	99.326	ENSCSAG00000015616	TNPO1	99	99.326	Chlorocebus_sabaeus
ENSRNOG00000014999	Tnpo1	94	86.412	ENSCHOG00000001746	TNPO1	99	86.412	Choloepus_hoffmanni
ENSRNOG00000014999	Tnpo1	100	97.865	ENSCPBG00000000260	TNPO1	94	97.865	Chrysemys_picta_bellii
ENSRNOG00000014999	Tnpo1	99	75.645	ENSCSAVG00000010981	-	99	75.533	Ciona_savignyi
ENSRNOG00000014999	Tnpo1	100	99.438	ENSCANG00000004353	TNPO1	99	99.438	Colobus_angolensis_palliatus
ENSRNOG00000014999	Tnpo1	100	99.775	ENSCGRG00001016580	Tnpo1	99	99.775	Cricetulus_griseus_chok1gshd
ENSRNOG00000014999	Tnpo1	96	99.766	ENSCGRG00000010366	Tnpo1	100	99.766	Cricetulus_griseus_crigri
ENSRNOG00000014999	Tnpo1	100	92.472	ENSCSEG00000012674	tnpo1	100	92.472	Cynoglossus_semilaevis
ENSRNOG00000014999	Tnpo1	100	93.371	ENSCVAG00000001010	tnpo1	100	93.371	Cyprinodon_variegatus
ENSRNOG00000014999	Tnpo1	100	92.929	ENSDARG00000035390	tnpo1	100	92.368	Danio_rerio
ENSRNOG00000014999	Tnpo1	100	93.169	ENSDNOG00000006647	TNPO1	99	93.169	Dasypus_novemcinctus
ENSRNOG00000014999	Tnpo1	93	99.157	ENSDORG00000006476	Tnpo1	100	99.156	Dipodomys_ordii
ENSRNOG00000014999	Tnpo1	99	57.562	FBgn0035693	CG8219	99	57.449	Drosophila_melanogaster
ENSRNOG00000014999	Tnpo1	86	99.251	ENSETEG00000017805	TNPO1	89	99.251	Echinops_telfairi
ENSRNOG00000014999	Tnpo1	94	85.119	ENSEBUG00000001895	tnpo1	100	85.238	Eptatretus_burgeri
ENSRNOG00000014999	Tnpo1	100	99.438	ENSEASG00005018055	TNPO1	100	99.438	Equus_asinus_asinus
ENSRNOG00000014999	Tnpo1	100	99.213	ENSECAG00000024424	TNPO1	99	99.213	Equus_caballus
ENSRNOG00000014999	Tnpo1	100	86.928	ENSELUG00000002821	tnpo1	100	86.275	Esox_lucius
ENSRNOG00000014999	Tnpo1	100	99.438	ENSFCAG00000013181	TNPO1	100	99.438	Felis_catus
ENSRNOG00000014999	Tnpo1	100	97.528	ENSFALG00000010292	TNPO1	100	97.528	Ficedula_albicollis
ENSRNOG00000014999	Tnpo1	100	99.101	ENSFDAG00000013345	TNPO1	99	99.101	Fukomys_damarensis
ENSRNOG00000014999	Tnpo1	100	93.715	ENSFHEG00000019234	tnpo1	100	93.715	Fundulus_heteroclitus
ENSRNOG00000014999	Tnpo1	100	90.370	ENSGMOG00000000347	tnpo1	99	90.370	Gadus_morhua
ENSRNOG00000014999	Tnpo1	100	96.742	ENSGALG00000015014	TNPO1	100	96.742	Gallus_gallus
ENSRNOG00000014999	Tnpo1	100	92.489	ENSGAFG00000000943	tnpo1	100	92.489	Gambusia_affinis
ENSRNOG00000014999	Tnpo1	100	93.146	ENSGACG00000015841	tnpo1	99	93.146	Gasterosteus_aculeatus
ENSRNOG00000014999	Tnpo1	100	97.640	ENSGAGG00000013419	TNPO1	100	97.640	Gopherus_agassizii
ENSRNOG00000014999	Tnpo1	100	82.735	ENSGGOG00000022535	-	98	82.735	Gorilla_gorilla
ENSRNOG00000014999	Tnpo1	100	99.438	ENSGGOG00000026800	TNPO1	100	99.438	Gorilla_gorilla
ENSRNOG00000014999	Tnpo1	100	93.258	ENSHBUG00000008068	tnpo1	100	93.258	Haplochromis_burtoni
ENSRNOG00000014999	Tnpo1	100	98.764	ENSHGLG00000000970	-	99	98.764	Heterocephalus_glaber_female
ENSRNOG00000014999	Tnpo1	97	77.326	ENSHGLG00100000963	-	99	76.744	Heterocephalus_glaber_male
ENSRNOG00000014999	Tnpo1	96	98.598	ENSHGLG00100017090	-	99	98.598	Heterocephalus_glaber_male
ENSRNOG00000014999	Tnpo1	100	99.438	ENSJJAG00000010244	Tnpo1	97	99.438	Jaculus_jaculus
ENSRNOG00000014999	Tnpo1	100	93.708	ENSKMAG00000018195	tnpo1	100	93.708	Kryptolebias_marmoratus
ENSRNOG00000014999	Tnpo1	91	90.382	ENSLBEG00000009521	tnpo1	96	90.382	Labrus_bergylta
ENSRNOG00000014999	Tnpo1	96	89.419	ENSLACG00000012199	TNPO1	100	89.419	Latimeria_chalumnae
ENSRNOG00000014999	Tnpo1	100	95.281	ENSLOCG00000011092	tnpo1	97	95.281	Lepisosteus_oculatus
ENSRNOG00000014999	Tnpo1	97	98.614	ENSLAFG00000011796	TNPO1	100	98.614	Loxodonta_africana
ENSRNOG00000014999	Tnpo1	100	99.438	ENSMFAG00000003636	TNPO1	99	99.438	Macaca_fascicularis
ENSRNOG00000014999	Tnpo1	100	99.326	ENSMMUG00000020923	TNPO1	99	99.326	Macaca_mulatta
ENSRNOG00000014999	Tnpo1	100	99.438	ENSMNEG00000044581	TNPO1	99	99.438	Macaca_nemestrina
ENSRNOG00000014999	Tnpo1	100	99.438	ENSMLEG00000030740	TNPO1	99	99.438	Mandrillus_leucophaeus
ENSRNOG00000014999	Tnpo1	100	93.596	ENSMAMG00000001357	tnpo1	100	93.596	Mastacembelus_armatus
ENSRNOG00000014999	Tnpo1	100	93.034	ENSMZEG00005004913	tnpo1	100	93.034	Maylandia_zebra
ENSRNOG00000014999	Tnpo1	100	99.775	ENSMAUG00000020550	Tnpo1	100	100.000	Mesocricetus_auratus
ENSRNOG00000014999	Tnpo1	100	95.281	ENSMICG00000008468	TNPO1	99	95.281	Microcebus_murinus
ENSRNOG00000014999	Tnpo1	100	99.775	ENSMOCG00000009301	Tnpo1	99	99.775	Microtus_ochrogaster
ENSRNOG00000014999	Tnpo1	87	92.784	ENSMMOG00000005551	tnpo1	99	92.784	Mola_mola
ENSRNOG00000014999	Tnpo1	99	97.660	ENSMODG00000001721	TNPO1	80	97.660	Monodelphis_domestica
ENSRNOG00000014999	Tnpo1	100	92.247	ENSMALG00000009782	tnpo1	100	92.247	Monopterus_albus
ENSRNOG00000014999	Tnpo1	100	99.551	MGP_CAROLIEiJ_G0018826	Tnpo1	100	100.000	Mus_caroli
ENSRNOG00000014999	Tnpo1	100	99.775	ENSMUSG00000009470	Tnpo1	100	100.000	Mus_musculus
ENSRNOG00000014999	Tnpo1	100	99.663	MGP_PahariEiJ_G0015901	Tnpo1	100	100.000	Mus_pahari
ENSRNOG00000014999	Tnpo1	100	99.551	MGP_SPRETEiJ_G0019708	Tnpo1	100	100.000	Mus_spretus
ENSRNOG00000014999	Tnpo1	100	99.326	ENSMPUG00000014387	TNPO1	99	99.326	Mustela_putorius_furo
ENSRNOG00000014999	Tnpo1	96	98.719	ENSMLUG00000016317	TNPO1	100	98.719	Myotis_lucifugus
ENSRNOG00000014999	Tnpo1	100	99.551	ENSNGAG00000021263	Tnpo1	99	99.551	Nannospalax_galili
ENSRNOG00000014999	Tnpo1	87	92.894	ENSNBRG00000009998	tnpo1	99	92.894	Neolamprologus_brichardi
ENSRNOG00000014999	Tnpo1	100	99.438	ENSNLEG00000004572	TNPO1	100	99.438	Nomascus_leucogenys
ENSRNOG00000014999	Tnpo1	90	93.930	ENSOPRG00000012390	TNPO1	89	93.930	Ochotona_princeps
ENSRNOG00000014999	Tnpo1	100	98.764	ENSODEG00000001771	TNPO1	99	98.764	Octodon_degus
ENSRNOG00000014999	Tnpo1	100	92.522	ENSONIG00000011151	tnpo1	99	92.522	Oreochromis_niloticus
ENSRNOG00000014999	Tnpo1	92	98.049	ENSOANG00000015785	TNPO1	100	98.049	Ornithorhynchus_anatinus
ENSRNOG00000014999	Tnpo1	96	92.757	ENSOCUG00000013318	TNPO1	100	92.757	Oryctolagus_cuniculus
ENSRNOG00000014999	Tnpo1	87	92.607	ENSORLG00000003182	tnpo1	99	92.607	Oryzias_latipes
ENSRNOG00000014999	Tnpo1	99	92.897	ENSORLG00020011559	tnpo1	99	92.897	Oryzias_latipes_hni
ENSRNOG00000014999	Tnpo1	99	93.010	ENSORLG00015019113	tnpo1	99	93.010	Oryzias_latipes_hsok
ENSRNOG00000014999	Tnpo1	99	92.897	ENSOMEG00000014567	tnpo1	99	92.897	Oryzias_melastigma
ENSRNOG00000014999	Tnpo1	100	99.326	ENSOGAG00000000808	TNPO1	99	99.326	Otolemur_garnettii
ENSRNOG00000014999	Tnpo1	100	99.213	ENSOARG00000005038	TNPO1	84	99.213	Ovis_aries
ENSRNOG00000014999	Tnpo1	100	99.438	ENSPPAG00000042518	TNPO1	99	99.438	Pan_paniscus
ENSRNOG00000014999	Tnpo1	100	99.438	ENSPPRG00000022336	TNPO1	100	99.438	Panthera_pardus
ENSRNOG00000014999	Tnpo1	100	99.438	ENSPTIG00000018839	TNPO1	100	99.438	Panthera_tigris_altaica
ENSRNOG00000014999	Tnpo1	94	86.464	ENSPTRG00000047731	-	100	86.464	Pan_troglodytes
ENSRNOG00000014999	Tnpo1	100	99.438	ENSPTRG00000016972	TNPO1	99	99.438	Pan_troglodytes
ENSRNOG00000014999	Tnpo1	100	99.438	ENSPANG00000006074	TNPO1	99	99.438	Papio_anubis
ENSRNOG00000014999	Tnpo1	100	90.674	ENSPKIG00000019795	tnpo1	100	90.674	Paramormyrops_kingsleyae
ENSRNOG00000014999	Tnpo1	100	97.528	ENSPSIG00000014366	TNPO1	99	97.528	Pelodiscus_sinensis
ENSRNOG00000014999	Tnpo1	100	90.348	ENSPMGG00000017014	tnpo1	100	90.348	Periophthalmus_magnuspinnatus
ENSRNOG00000014999	Tnpo1	96	99.766	ENSPEMG00000007444	Tnpo1	100	99.766	Peromyscus_maniculatus_bairdii
ENSRNOG00000014999	Tnpo1	100	97.978	ENSPCIG00000026080	TNPO1	100	97.978	Phascolarctos_cinereus
ENSRNOG00000014999	Tnpo1	100	93.281	ENSPFOG00000011447	tnpo1	100	93.281	Poecilia_formosa
ENSRNOG00000014999	Tnpo1	100	93.281	ENSPLAG00000018696	tnpo1	100	93.281	Poecilia_latipinna
ENSRNOG00000014999	Tnpo1	100	93.483	ENSPMEG00000024121	tnpo1	100	93.483	Poecilia_mexicana
ENSRNOG00000014999	Tnpo1	100	93.386	ENSPREG00000020705	tnpo1	100	93.386	Poecilia_reticulata
ENSRNOG00000014999	Tnpo1	100	99.326	ENSPPYG00000015545	TNPO1	99	99.326	Pongo_abelii
ENSRNOG00000014999	Tnpo1	100	99.326	ENSPCOG00000004254	TNPO1	99	99.326	Propithecus_coquereli
ENSRNOG00000014999	Tnpo1	100	99.326	ENSPVAG00000013051	TNPO1	99	99.326	Pteropus_vampyrus
ENSRNOG00000014999	Tnpo1	100	93.042	ENSPNYG00000001522	tnpo1	100	93.042	Pundamilia_nyererei
ENSRNOG00000014999	Tnpo1	100	92.489	ENSPNAG00000021484	tnpo1	100	92.937	Pygocentrus_nattereri
ENSRNOG00000014999	Tnpo1	100	99.438	ENSRBIG00000021642	TNPO1	100	99.438	Rhinopithecus_bieti
ENSRNOG00000014999	Tnpo1	100	99.438	ENSRROG00000035271	TNPO1	99	99.438	Rhinopithecus_roxellana
ENSRNOG00000014999	Tnpo1	100	99.101	ENSSBOG00000029256	TNPO1	100	99.101	Saimiri_boliviensis_boliviensis
ENSRNOG00000014999	Tnpo1	97	97.454	ENSSHAG00000007120	TNPO1	100	97.454	Sarcophilus_harrisii
ENSRNOG00000014999	Tnpo1	100	94.501	ENSSFOG00015015448	tnpo1	100	94.501	Scleropages_formosus
ENSRNOG00000014999	Tnpo1	96	93.575	ENSSMAG00000011202	tnpo1	97	93.575	Scophthalmus_maximus
ENSRNOG00000014999	Tnpo1	100	93.708	ENSSDUG00000007943	tnpo1	100	93.708	Seriola_dumerili
ENSRNOG00000014999	Tnpo1	100	93.708	ENSSLDG00000014578	tnpo1	100	93.708	Seriola_lalandi_dorsalis
ENSRNOG00000014999	Tnpo1	100	96.742	ENSSPUG00000000149	TNPO1	100	96.742	Sphenodon_punctatus
ENSRNOG00000014999	Tnpo1	100	93.820	ENSSPAG00000000258	tnpo1	100	93.820	Stegastes_partitus
ENSRNOG00000014999	Tnpo1	100	99.326	ENSSSCG00000027293	TNPO1	100	99.326	Sus_scrofa
ENSRNOG00000014999	Tnpo1	99	95.312	ENSTGUG00000005729	TNPO1	100	95.312	Taeniopygia_guttata
ENSRNOG00000014999	Tnpo1	100	93.034	ENSTRUG00000018491	tnpo1	100	93.034	Takifugu_rubripes
ENSRNOG00000014999	Tnpo1	69	88.799	ENSTNIG00000007483	tnpo1	100	88.799	Tetraodon_nigroviridis
ENSRNOG00000014999	Tnpo1	87	100.000	ENSTBEG00000007848	TNPO1	86	100.000	Tupaia_belangeri
ENSRNOG00000014999	Tnpo1	96	95.322	ENSTTRG00000000209	TNPO1	95	95.322	Tursiops_truncatus
ENSRNOG00000014999	Tnpo1	100	99.438	ENSUMAG00000007635	TNPO1	100	99.438	Ursus_maritimus
ENSRNOG00000014999	Tnpo1	100	95.393	ENSVPAG00000009601	TNPO1	99	95.393	Vicugna_pacos
ENSRNOG00000014999	Tnpo1	100	99.438	ENSVVUG00000007338	TNPO1	100	99.438	Vulpes_vulpes
ENSRNOG00000014999	Tnpo1	100	94.382	ENSXETG00000016812	tnpo1	99	94.382	Xenopus_tropicalis
ENSRNOG00000014999	Tnpo1	100	93.154	ENSXMAG00000005440	tnpo1	100	93.154	Xiphophorus_maculatus

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0005737	cytoplasm	21873635.	IBA	Component
GO:0006606	protein import into nucleus	-	ISO	Process
GO:0006607	NLS-bearing protein import into nucleus	21873635.	IBA	Process
GO:0006610	ribosomal protein import into nucleus	21873635.	IBA	Process
GO:0008139	nuclear localization sequence binding	21873635.	IBA	Function
GO:0008536	Ran GTPase binding	-	IEA	Function
GO:0008565	protein transporter activity	21873635.	IBA	Function
GO:0031965	nuclear membrane	21873635.	IBA	Component
GO:0034399	nuclear periphery	21873635.	IBA	Component