EuRBPDB

Description

RBDs

Expression

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Gene Ontology

Description

Ensembl ID: ENSRNOG00000015229 (Gene tree)
Gene ID: 678741
Gene Symbol: Zc3h4
Alias: LOC678741
Full Name: zinc finger CCCH-type containing 4
Gene Type: protein_coding
Species: Rattus_norvegicus
Status: putative
Strand: Plus strand
Length: 35974 bases
Position: chr1:78354934-78390907
Accession: 1596943
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSRNOP00000020509	zf-CCCH	PF00642.24	3e-13	1	1

Expression

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSRNOT00000020509	-	5819	XM_001053214	ENSRNOP00000020509	1172 (aa)	XP_001053214	D3ZVW3

Gene Model

Click here to download ENSRNOG00000015229's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSRNOG00000015229's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSRNOG00000015229	Zc3h4	69	38.507	ENSRNOG00000026277	Zc3h6	58	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSRNOG00000015229	Zc3h4	78	85.559	ENSG00000130749	ZC3H4	99	86.971	Homo_sapiens
ENSRNOG00000015229	Zc3h4	80	67.804	ENSACAG00000003986	ZC3H4	53	62.500	Anolis_carolinensis
ENSRNOG00000015229	Zc3h4	98	87.952	ENSCJAG00000011601	ZC3H4	89	90.240	Callithrix_jacchus
ENSRNOG00000015229	Zc3h4	98	84.615	ENSCAFG00000004182	ZC3H4	88	84.615	Canis_familiaris
ENSRNOG00000015229	Zc3h4	98	81.225	ENSCHIG00000013956	ZC3H4	90	81.818	Capra_hircus
ENSRNOG00000015229	Zc3h4	91	84.547	ENSCLAG00000001032	ZC3H4	98	85.680	Chinchilla_lanigera
ENSRNOG00000015229	Zc3h4	71	77.910	ENSCPBG00000001719	ZC3H4	94	76.708	Chrysemys_picta_bellii
ENSRNOG00000015229	Zc3h4	84	96.646	ENSCGRG00001016116	Zc3h4	100	96.646	Cricetulus_griseus_chok1gshd
ENSRNOG00000015229	Zc3h4	98	82.186	ENSDORG00000002726	Zc3h4	98	84.165	Dipodomys_ordii
ENSRNOG00000015229	Zc3h4	82	96.703	ENSETEG00000005763	ZC3H4	74	96.739	Echinops_telfairi
ENSRNOG00000015229	Zc3h4	100	85.738	ENSECAG00000024342	ZC3H4	92	84.919	Equus_caballus
ENSRNOG00000015229	Zc3h4	80	83.193	ENSEEUG00000000519	ZC3H4	67	83.898	Erinaceus_europaeus
ENSRNOG00000015229	Zc3h4	98	85.923	ENSFCAG00000004835	ZC3H4	89	86.807	Felis_catus
ENSRNOG00000015229	Zc3h4	98	88.650	ENSJJAG00000019068	Zc3h4	98	88.918	Jaculus_jaculus
ENSRNOG00000015229	Zc3h4	98	95.841	ENSMAUG00000000068	Zc3h4	98	95.841	Mesocricetus_auratus
ENSRNOG00000015229	Zc3h4	99	97.260	ENSMUSG00000059273	Zc3h4	99	97.260	Mus_musculus
ENSRNOG00000015229	Zc3h4	100	87.620	MGP_PahariEiJ_G0021089	Zc3h4	94	96.188	Mus_pahari
ENSRNOG00000015229	Zc3h4	100	87.222	MGP_SPRETEiJ_G0030312	Zc3h4	94	96.393	Mus_spretus
ENSRNOG00000015229	Zc3h4	76	75.188	ENSMEUG00000009167	ZC3H4	75	76.820	Notamacropus_eugenii
ENSRNOG00000015229	Zc3h4	94	90.137	ENSOPRG00000014889	ZC3H4	88	89.985	Ochotona_princeps
ENSRNOG00000015229	Zc3h4	98	84.332	ENSODEG00000008320	ZC3H4	98	84.589	Octodon_degus
ENSRNOG00000015229	Zc3h4	80	62.192	ENSOANG00000001794	ZC3H4	59	63.158	Ornithorhynchus_anatinus
ENSRNOG00000015229	Zc3h4	96	83.432	ENSOCUG00000026069	ZC3H4	55	92.073	Oryctolagus_cuniculus
ENSRNOG00000015229	Zc3h4	98	72.537	ENSPSIG00000002241	ZC3H4	93	75.111	Pelodiscus_sinensis
ENSRNOG00000015229	Zc3h4	99	96.490	ENSPEMG00000009762	Zc3h4	99	96.490	Peromyscus_maniculatus_bairdii
ENSRNOG00000015229	Zc3h4	93	85.149	ENSPVAG00000005687	ZC3H4	83	87.053	Pteropus_vampyrus
ENSRNOG00000015229	Zc3h4	70	84.177	ENSSARG00000014146	ZC3H4	68	87.407	Sorex_araneus
ENSRNOG00000015229	Zc3h4	82	84.074	ENSSSCG00000003110	ZC3H4	78	85.498	Sus_scrofa
ENSRNOG00000015229	Zc3h4	100	85.417	ENSVVUG00000000208	ZC3H4	98	85.097	Vulpes_vulpes

Gene Ontology

Go ID	Go_term	PubmedID	Evidence	Category
GO:0001162	RNA polymerase II intronic transcription regulatory region sequence-specific DNA binding	21873635.	IBA	Function
GO:0003700	DNA-binding transcription factor activity	21873635.	IBA	Function
GO:0005634	nucleus	21873635.	IBA	Component
GO:0005654	nucleoplasm	-	IEA	Component
GO:0005654	nucleoplasm	-	ISO	Component
GO:0005829	cytosol	-	IEA	Component
GO:0005829	cytosol	-	ISO	Component
GO:0045892	negative regulation of transcription, DNA-templated	21873635.	IBA	Process
GO:0046872	metal ion binding	-	IEA	Function